YEASTPMID               package:YEAST               R Documentation

_M_a_p_p_i_n_g_s _b_e_t_w_e_e_n _p_r_o_b_e _i_d_e_n_t_i_f_i_e_r_s _a_n_d _P_u_b_M_e_d _i_d_e_n_t_i_f_i_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     PubMed <URL: http://www.ncbi.nlm.nih.gov/PubMed/> includes over 14
     million citations for biomedical articles back to the 1950's. Each
     article has a unique PubMed identifier. YEASTPMID maps probe
     identifiers to PubMed identifier for publications that cited the
     genes represented by the probe identifiers

_D_e_t_a_i_l_s:

     Titles, abstracts, and possibly full texts of articles can be
     obtained from PubMed by providing a valid PubMed id. The pubmed
     function of annotate can also be used for the same purpose.

     Mappings were based on data provided by:

     Yeast Genome:<URL:
     http://www.yeastgenome.org/DownloadContents.shtml>. Built: Yeast
     Genome data are built at various time  intervals. Sources used
     were downloaded  Fri Jan  7 14:56:40 2005 

     Package built Fri Jan  7 16:12:38 2005

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.ncbi.nlm.nih.gov/LocusLink>

_E_x_a_m_p_l_e_s:

         # Convert the environment to a list
         xx <- as.list(YEASTPMID)
         if(length(xx) > 0){
             # The probe ids for the first two elements of XX
             xx[1:2]
             # Get the first one
             xx[[1]]
             if(interactive() && !is.null(xx[[1]]) && !is.na(xx[[1]])
                && require(annotate)){
                 # Gets article information as XML files
                 xmls <- pubmed(xx[[1]], disp = "data")
                 # Views article information using a browser
                 pubmed(xx[[1]], disp = "browser")
             }
         }

