arrayData-class         Class arrayData, a simple container for raw
                        data and related information
cbind.arrayData         Cbind for objects of class arrayData
cbind.exprSetRG         Cbind for objects of class exprSetRG
colCors                 Correlation coefficients between the
                        corresponding columns (rows) of two matrices
                        that have the same size.
controlledApply         controlledApply
controlledSubsetting    Subsetting of Arrays
detectReplicas          detectReplicas
exprSetRG-class         Class exprSetRG for two colour DNA microarray
                        data (extension of exprSet)
fdc                     FDC (false discovery count)
interweave              interweave
normalise               Normalisation of microarray data
plot.imageMatrix        Visualisation of a matrix
plotDistributions       Visualisation of distributions
processArrayData        Automated processing of two colour DNA
                        microarray data
processArrayDataObject
                        Automated processing and normalisation of an
                        arrayData-object (part of function
                        processArrayData)
qualityDiagnostics      Generates quality diagnostic plots
qualityParameters       Calculation of quality characteristics for DNA
                        microarray hybridisations
readIntensities         readIntensities
readpDataSlides         Reads the description of all slides or
                        channels
removeSpots             Remove specified spots from objects
rowFtests               F-test and t-test for rows of a matrix
simpleApply             simpleApply
slideMerge              Averaging of two colour microarray replicas
spatialLayout           Calculation of two dimensional coordinates
spotMerge               Averaging of spot replicas
visualiseHybridisations
                        Microarray intensity data are visualised with
                        respect to their spatial layout
visualiseQualityParameters
                        Graphical representation of quality parameters
write.htmltable         Write a data frame into an html table within a
                        html page
writeToFile             Writes a textual representation of an
                        exprSetRG and/or arrayData object
