maQualityPlots {arrayQuality} | R Documentation

## Qualitative diagnostic plot for general hybridization

### Description

This function generates diagnostic plots for a qualitative assessment of slide quality.

### Usage

    maQualityPlots(mrawObj, headerInfo = "", save = TRUE, dev = "png", col=NULL,
    badspotfunction=NULL, controlId = c("ID", "Name"), DEBUG = FALSE, ...)

### Arguments

`mrawObj` | `marrayRaw` or `RGList` object representing the slides to be tested.
`headerInfo` | Text to be used as header in the diagnostic plot.
`save` | Logical. If 'TRUE', the plot is saved to a file.
`dev` | A "character" string naming the graphics device. This will take arguments "png", "jpeg" and "ps" only. By default, dev is set to "png".
`col` | Vector of colors to use to describe different categories of spots.
`badspotfunction` | Function to use for bad spots on the array.
`controlId` | Character string. Name of the column of the gpr file used to define controls (or provides the name of the probes).
`DEBUG` | If 'TRUE', debug statements are printed.
`...` | additional arguments

### Author(s)

Jean Yang

### Examples

    # Example uses swirl dataset...

[Package arrayQuality version 1.0.9 Index]