\contentsline {section}{\numberline {1}Overview}{1}{section.1}
\contentsline {section}{\numberline {2}Getting started}{1}{section.2}
\contentsline {section}{\numberline {3}Introduction}{2}{section.3}
\contentsline {section}{\numberline {4}HOPACH Clustering of Genes}{2}{section.4}
\contentsline {section}{\numberline {5}Bootstrap Resampling}{3}{section.5}
\contentsline {section}{\numberline {6}HOPACH Clustering of Arrays}{3}{section.6}
\contentsline {section}{\numberline {7}Output files}{4}{section.7}
\contentsline {subsection}{\numberline {7.1}Gene clustering and bootstrap results table}{4}{subsection.7.1}
\contentsline {subsection}{\numberline {7.2}Bootstrap fuzzy clustering in MapleTree}{4}{subsection.7.2}
\contentsline {subsection}{\numberline {7.3}HOPACH hierarchical clustering in MapleTree}{4}{subsection.7.3}
