AnnotationDb_database   AnnotationDb database
AnnotationDb_select     Select columns from AnnotationDb database
BiocFileCache_database
                        Cached database
CompoundDb_source       Import CompDB source
GO_database             GO.db
MTox700plus_database    MTox700plus_database
PathBank_metabolite_database
                        PathBank_metabolite_database
add_columns             Add columns
add_labels              Add column of labels
annotation_bar_chart    Annotation bar chart
annotation_database     An annotation database
annotation_histogram    Annotation histogram
annotation_histogram2d
                        Annotation 2D histogram
annotation_pie_chart    Annotation pie chart
annotation_source       An annotation source
annotation_table        An annotation table
annotation_upset_chart
                        Annotation UpSet chart
annotation_venn_chart   Annotation venn chart
cache_as_is             Cache file with no changes using BiocFileCache
calc_ppm_diff           Calculate ppm difference
calc_rt_diff            Calculate RT difference
cd_source               LCMS table
chart_plot,annotation_bar_chart,annotation_source-method
                        chart_plot method
check_for_columns       Check for columns in an 'annotation_source'
classyfire_lookup       Query ClassyFire database
combine_columns         Combine columns
combine_records         Combine annotation records (rows)
combine_records_helper_functions
                        Combine records helper functions
combine_sources         Combine annotation sources (tables)
compute_column          Compute a column
compute_record          Compute a value for a record
database_lookup         ID lookup by database
eutils_lookup           NCBI E-utils query
excel_database          Excel database
filter_labels           Filter by factor labels
filter_na               Filter by missing values
filter_range            Filter by range
filter_records          Filter rows
filter_venn             Filter by factor levels
github_file             GitHub file
greek_dictionary        Greek dictionary
hmdb_lookup             Compound ID lookup via pubchem
id_counts               id counts
import_source           Import_source
is_writable             Is database writable
kegg_lookup             Convert to or from kegg identifiers
lcms_table              LCMS table
lipidmaps_lookup        LipidMaps api lookup
ls_source               LCMS table
model_apply,model,annotation_source-method
                        Apply method
mspurity_source         msPurity source
mwb_compound_lookup     Convert to/from kegg identifiers
mwb_refmet_database     mwb_refmet_database
mwb_structure           MWB molecular structure
mz_match                mz matching
mzrt_match              mz matching
normalise_lipids        Normalise Lipids nomenclature
normalise_strings       Normalise string
opsin_lookup            Compound ID lookup via OPSIN
pivot_columns           Pivot longer
prioritise_columns      Combine several columns into a single column.
pubchem_compound_lookup
                        Compound ID lookup via PubChem
pubchem_property_lookup
                        Compound property lookup via pubchem
pubchem_structure       PubChem molecular structure
pubchem_widget          PubChem widget
racemic_dictionary      Racemic dictionary
rdata_database          rdata database
rds_cache               rds cache
rds_database            rds database
read_database           Read a database
read_source             Import annotation source
remove_columns          Select columns
rename_columns          Select columns
required_cols           Required columns in an annotation source
rest_api                rest_api
rt_match                rt matching
select_columns          Select columns
split_column            Split a column
split_records           Expand records
sqlite_database         SQLite database
trim_whitespace         Trim whitespace
tripeptide_dictionary   Tripeptide dictionary
unique_records          Keep unique_records
unzip_before_cache      Unzip file before caching with
                        BiocFileCache_database
upset_min_size          UpSet chart filter helper functions
vertical_join           Join sources vertically
wherever                Filter helper function to select records
write_database          Write to a database
