Package: SpatialExperimentIO
Title: Read in Xenium, CosMx, MERSCOPE or STARmapPLUS data as
        SpatialExperiment object
Version: 1.2.0
Authors@R: c(
    person("Yixing E.", "Dong", 
        email = "estelladong729@gmail.com", 
        role = c("aut", "cre"), 
        comment = c(ORCID = "0009-0003-5115-5686")))
URL: https://github.com/estellad/SpatialExperimentIO
BugReports: https://github.com/estellad/SpatialExperimentIO/issues
Description: Read in imaging-based spatial transcriptomics technology
        data. Current available modules are for Xenium by 10X Genomics,
        CosMx by Nanostring, MERSCOPE by Vizgen, or STARmapPLUS from
        Broad Institute. You can choose to read the data in as a
        SpatialExperiment or a SingleCellExperiment object.
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
Imports: DropletUtils, SpatialExperiment, SingleCellExperiment,
        methods, data.table, arrow, purrr, S4Vectors
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle
biocViews: DataRepresentation, DataImport, Infrastructure,
        Transcriptomics, SingleCell, Spatial, GeneExpression
RoxygenNote: 7.3.2
Config/testthat/edition: 3
Config/pak/sysreqs: cmake make libmagick++-dev gsfonts libicu-dev
        libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:34:03 UTC
RemoteUrl: https://github.com/bioc/SpatialExperimentIO
RemoteRef: RELEASE_3_22
RemoteSha: 811da54c108369415c3ed5f15d18d9ee75eca02f
NeedsCompilation: no
Packaged: 2025-11-11 17:49:39 UTC; root
Author: Yixing E. Dong [aut, cre] (ORCID:
    <https://orcid.org/0009-0003-5115-5686>)
Maintainer: Yixing E. Dong <estelladong729@gmail.com>
Depends: R (>= 4.1.0)
Built: R 4.5.2; ; 2025-11-12 03:07:51 UTC; windows
