Package	Download_score
snpStats	2093
MLInterfaces	432
genefilter	11849
BiocParallel	41728
ChromHeatMap	137
MVCClass	146
CFAssay	101
IRanges	54350
biocViews	4423
EBImage	2810
BSgenome	15888
Biobase	49430
GenomicFeatures	18715
AnnotationDbi	36221
flowCore	2751
Rgraphviz	9264
kebabs	164
goseq	1437
illuminaio	2867
clonotypeR	49
ChIPpeakAnno	1060
flagme	118
geneRecommender	129
GenomeGraphs	59
BufferedMatrixMethods	129
ontoCAT	39
AnnotationForge	2085
DEXSeq	1442
GEOmetadb	267
DFP	137
Gviz	3375
mygene	357
CoCiteStats	133
CMA	191
gene2pathway	15
ssize	158
preprocessCore	14190
MIMOSA	51
sva	7403
wateRmelon	855
ChAMP	705
triplex	135
Ringo	214
TDARACNE	52
ReactomePA	2742
affy	7875
genomeIntervals	212
mBPCR	129
polyester	131
RankProd	288
GSVA	7244
clusterProfiler	20433
cisPath	108
OncoSimulR	118
SNAGEE	117
weaver	132
regionReport	182
Roleswitch	44
GenomicInteractions	428
netbiov	58
fastseg	790
flowUtils	72
lpNet	128
chimera	50
Mfuzz	1378
GeneSelectMMD	142
TurboNorm	131
methylPipe	151
metaSeq	126
annaffy	305
ProCoNA	35
IsoGeneGUI	53
RTCA	129
BeadDataPackR	568
BrainStars	47
tRanslatome	215
QuasR	372
geecc	35
flowType	45
PSICQUIC	55
unifiedWMWqPCR	90
UniProt.ws	461
genomation	691
ArrayTV	42
iClusterPlus	424
synapter	179
gmapR	176
tilingArray	183
mdgsa	34
CNEr	3420
ReportingTools	585
TFBSTools	3487
topGO	2837
CAGEr	280
genomes	136
ITALICS	127
BHC	90
CNORdt	130
BiocCaseStudies	58
LVSmiRNA	46
BicARE	161
tracktables	206
TitanCNA	143
pepStat	109
Sushi	75
metaMS	215
Rolexa	34
ChemmineOB	327
Rqc	310
DOSE	19388
flowTrans	157
metabomxtr	112
CGEN	124
deepSNV	192
EnrichmentBrowser	550
exomePeak	49
jmosaics	26
sigPathway	69
miRNAtap	191
GOFunction	48
iSeq	109
ADaCGH2	143
CSAR	146
coRNAi	42
EDASeq	1726
PAPi	42
BufferedMatrix	132
AffyCompatible	71
KCsmart	137
ENVISIONQuery	44
ccrepe	173
clstutils	127
OmicCircos	235
MEDME	122
affycomp	161
procoil	125
omicade4	204
prebs	126
epigenomix	128
GSAR	151
SNPRelate	1718
made4	302
ASSET	151
ontoTools	19
DMRforPairs	54
hiAnnotator	136
compEpiTools	125
GenoView	16
affyQCReport	63
flowCL	46
MiChip	121
MotifDb	597
GLAD	232
SwimR	33
limmaGUI	148
ChemmineR	830
frmaTools	133
FEM	41
asmn	7
GRENITS	111
anota	141
AffyExpress	59
interactiveDisplayBase	5457
NormqPCR	210
les	135
nucleR	156
CoGAPS	326
ecolitk	145
hyperdraw	150
daMA	126
Agi4x44PreProcess	20
MMDiff	32
COHCAP	60
Rnits	113
BioMVCClass	140
GeneticsBase	10
VariantTools	181
proBAMr	111
GeneticsPed	150
deltaGseg	114
RNAither	59
BCRANK	146
PAA	127
mitoODE	39
antiProfiles	119
PANR	123
cn.mops	269
BiGGR	122
cycle	134
networkBMA	51
BioNet	286
flowMeans	186
Rbowtie	488
motifStack	710
spikeLI	112
fabia	208
GOexpress	138
SJava	21
girafe	163
MSnbase	3104
snpMatrix	14
ensemblVEP	142
CoRegNet	59
spade	31
PWMEnrich	205
RIPSeeker	52
AgiMicroRna	197
rsbml	176
CNORfuzzy	136
CNAnorm	127
ExiMiR	128
ddgraph	38
GlobalAncova	978
ampliQueso	35
cnvGSA	130
proteinProfiles	102
MLP	178
TargetSearch	132
timecourse	150
seqCNA	59
pgUtils	13
piano	455
mdqc	136
keggorthology	238
ReQON	65
Resourcerer	22
HilbertVisGUI	91
rBiopaxParser	193
affypdnn	55
DECIPHER	2833
cleanUpdTSeq	134
lol	36
MSstats	539
exonmap	13
roar	124
hexbin	37
xmapcore	10
cosmo	15
GeneOverlap	591
mmnet	32
edd	18
GeneRfold	7
Seqnames	0
GSCA	116
Clomial	108
MLSeq	181
gff3Plotter	4
ssviz	121
GSReg	120
pairseqsim	3
MBASED	115
rRDP	118
RUVnormalize	122
ASGSCA	115
SGSeq	334
affydata	5
arrayQCplot	3
gQTLstats	37
TRONCO	127
Rsamtools	23691
zlibbioc	54575
annotate	17209
DESeq2	22428
BiocCheck	1746
hypergraph	200
copa	132
segmentSeq	144
beadarray	671
IPPD	41
idiogram	134
minfi	2381
ACME	165
flowViz	997
DynDoc	1386
limma	34377
Category	1653
ShortRead	6241
OCplus	150
gcrma	1180
Icens	431
RNASeqPower	216
gaia	53
arrayQuality	222
spotSegmentation	46
globaltest	1781
CoverageView	121
domainsignatures	41
DESeq	185
bumphunter	2699
puma	164
GeneRegionScan	141
HTqPCR	120
FlowSOM	1080
switchBox	145
biovizBase	5151
DirichletMultinomial	4767
COMPASS	141
flowFlowJo	23
r3Cseq	142
crlmm	297
HDTD	96
snm	171
pcaMethods	5152
seqLogo	3813
CorMut	42
iterativeBMA	133
iBMQ	96
MassSpecWavelet	1679
groHMM	114
BiSeq	143
splicegear	52
VariantFiltering	145
affycoretools	407
GGBase	59
bgafun	50
quantsmooth	644
eisa	57
BitSeq	59
plrs	41
prada	63
pdInfoBuilder	175
Pviz	128
genoset	56
SAGx	62
triform	48
RefNet	38
CNVtools	45
RDAVIDWebService	65
macat	80
HEM	131
ChIPsim	148
BaseSpaceR	129
derfinder	554
maanova	74
aCGH	245
geNetClassifier	172
cobindR	47
trackViewer	620
pvac	126
SamSPECTRAL	186
MassArray	106
joda	46
BayesPeak	49
exonfindR	0
monocle	3330
SplicingGraphs	147
PCpheno	52
IdMappingRetrieval	48
AnnotationFuncs	49
Rariant	47
ggbio	1943
bioassayR	133
GenomicTuples	113
RTopper	132
LPE	141
ExpressionView	53
tigre	142
ARRmNormalization	122
CNTools	177
Repitools	320
cghMCR	153
FourCSeq	34
iPAC	140
mgsa	166
SBMLR	134
MSGFplus	36
GEOsubmission	133
biocGraph	259
PROcess	155
DeconRNASeq	298
a4Base	188
RbcBook1	197
SeqGSEA	230
beadarraySNP	76
gCMAPWeb	39
xps	45
flowPhyto	16
SeqVarTools	455
rbsurv	145
NCIgraph	122
rama	53
mzR	3242
customProDB	151
OLIN	150
ALDEx2	1213
missMethyl	1051
facopy	25
ctc	289
ArrayExpressHTS	50
phyloseq	5454
ReadqPCR	229
SIM	135
scsR	40
webbioc	139
GOSim	107
RchyOptimyx	47
flowBeads	125
DEGreport	614
eiR	124
TSSi	44
REDseq	158
PSEA	57
GeneMeta	163
quantro	292
DriverNet	110
CGHbase	419
Vega	39
CAFE	132
fdrame	130
qcmetrics	140
paxtoolsr	114
a4	158
trio	166
pkgDepTools	72
HELP	128
TypeInfo	99
bioDist	282
paircompviz	118
COSNet	112
NTW	114
ChIPseqR	155
metahdep	121
PADOG	336
altcdfenvs	164
genefu	360
easyRNASeq	186
ChIPXpress	112
SeqArray	933
PING	142
widgetTools	1391
miRNApath	119
MiPP	135
pamr	19
isobar	150
pathifier	135
graphite	3172
ArrayExpress	434
BioSeqClass	52
pickgene	114
rqubic	144
dks	106
spkTools	127
csaw	559
rpx	335
RDRToolbox	181
RWebServices	24
h5vc	148
flowMap	67
multiscan	126
NetSAM	152
shinyMethyl	164
STATegRa	121
vbmp	154
Rdisop	437
spliceR	38
CORREP	60
MSnID	314
mzID	3004
qrqc	57
CRISPRseek	183
STRINGdb	1346
INPower	120
HTSanalyzeR	52
flowCHIC	123
OLINgui	132
sagenhaft	123
imageHTS	63
spliceSites	38
pcaGoPromoter	40
minet	766
Rdbi	16
clst	126
codelink	155
iChip	129
msmsTests	288
birta	45
PLPE	129
HTSFilter	233
pcot2	62
SimBindProfiles	73
GWASTools	630
plgem	156
GeneGroupAnalysis	10
twilight	154
PECA	126
rfPred	120
logicFS	149
CSSP	42
cosmoGUI	14
simulatorAPMS	11
Ruuid	16
RMAGEML	11
BEAT	128
messina	114
Rcpi	171
viper	746
rflowcyt	15
fbat	11
biocDatasets	10
riboSeq	0
oposSOM	148
derfinderHelper	553
IMPCdata	94
nethet	124
pxr	0
PROPER	141
RBGL	9267
S4Vectors	55451
geneplotter	4815
GenomicFiles	1251
GenomicRanges	44865
qpcrNorm	140
flowMerge	172
biomaRt	22063
GOSemSim	18909
GenomicAlignments	23216
GenomeInfoDb	55843
matchBox	104
ncdfFlow	1092
VariantAnnotation	11637
bridge	57
SRAdb	453
goProfiles	169
maskBAD	126
GraphAT	145
maSigPro	325
GEOquery	9726
occugene	116
RCASPAR	104
xcms	1616
KEGGREST	36163
multtest	12000
siggenes	3229
rhdf5	20702
MethylMix	147
MPFE	96
annotationTools	157
safe	653
ABarray	156
bsseq	1475
FGNet	137
stepNorm	131
inveRsion	44
CGHregions	150
cellHTS2	208
clusterStab	150
flowClust	767
GSEABase	8897
methylumi	1522
qusage	404
affxparser	1569
marray	1907
vsn	5008
MBAmethyl	91
Rtreemix	139
BAC	50
GOstats	1505
GeneticsDesign	48
staRank	95
tspair	55
agilp	144
plethy	54
GOTHiC	133
ConsensusClusterPlus	2990
fastLiquidAssociation	118
affyio	7977
Polyfit	35
attract	151
NGScopy	29
HilbertVis	206
MergeMaid	57
ToPASeq	34
VegaMC	122
Starr	50
ddCt	155
chipseq	647
factDesign	136
AGDEX	132
derfinderPlot	165
OrganismDbi	2861
snapCGH	93
sRAP	44
cummeRbund	270
flowBin	130
nem	62
AtlasRDF	26
affyContam	160
exomeCopy	244
GeneAnswers	61
gaggle	75
copynumber	135
metaArray	56
CAMERA	482
gCMAP	46
BUS	132
ternarynet	114
PICS	161
BridgeDbR	121
CGHcall	392
gaga	147
diffGeneAnalysis	119
MCRestimate	53
Streamer	130
aroma.light	1899
neaGUI	25
hiReadsProcessor	123
rTRM	171
MeasurementError.cor	118
SQUADD	58
PROMISE	143
pathRender	136
affyPara	58
GeneExpressionSignature	148
frma	175
AffyRNADegradation	128
SNPchip	58
phenoDist	36
apComplex	139
MethylSeekR	197
UNDO	116
SPIA	608
RUVSeq	912
SemDist	108
BiRewire	197
chipenrich	166
flowPlots	115
affyILM	146
a4Reporting	152
FunciSNP	45
Pbase	33
rain	150
rTRMui	121
pvca	278
OTUbase	130
sangerseqR	824
a4Core	199
ppiStats	64
xmapbridge	114
msmsEDA	294
qvalue	18681
BAGS	130
SigFuge	123
NOISeq	615
categoryCompare	136
flipflop	38
KEGGgraph	5304
a4Preproc	193
hpar	293
HMMcopy	366
MmPalateMiRNA	48
pint	40
seqTools	153
RBioinf	139
SigCheck	105
alsace	40
QDNAseq	366
ArrayTools	56
DupChecker	24
ClassifyR	346
RSVSim	127
LBE	220
M3D	31
RNAinteract	101
coGPS	125
iBBiG	144
sigaR	43
sizepower	129
Rchemcpp	36
CopyNumber450k	24
MGFM	116
mvGST	27
makePlatformDesign	10
hapFabia	126
yaqcaffy	51
betr	46
nudge	42
GeneNetworkBuilder	137
gprege	41
intansv	143
iterativeBMAsurv	115
DEGraph	112
arrayQualityMetrics	471
PAnnBuilder	50
clipper	148
saps	15
ABSSeq	175
MEIGOR	130
metagenomeSeq	1613
CNORfeeder	134
OutlierD	53
goTools	134
proteoQC	32
MANOR	136
plw	56
NetPathMiner	107
predictionet	46
flowcatchR	129
genArise	118
pRoloc	280
AnalysisPageServer	30
qpgraph	207
Rcade	57
DiffBind	1106
Heatplus	495
Harshlight	144
RamiGO	35
RCytoscape	36
flowCyBar	108
flowFit	39
sscore	67
waveTiling	46
RMAPPER	14
RmiR	51
RPA	146
SCAN.UPC	192
EBcoexpress	135
SLqPCR	130
dagLogo	141
CellNOptR	211
NarrowPeaks	46
DSS	809
PhenStat	120
cleaver	246
Risa	200
TCC	265
annmap	117
TransView	104
RRHO	140
DBChIP	51
KEGGprofile	54
dexus	50
farms	71
maDB	22
GEWIST	105
EasyqpcR	47
htSeqTools	48
iFlow	9
geneRxCluster	127
AnnBuilder	10
matchprobes	11
RTools4TB	7
arrayMagic	8
SemSim	5
ELBOW	39
savR	43
ChIPQC	383
pRolocGUI	150
mQTL.NMR	29
RSNPper	11
Rintact	8
iSPlot	5
MAIT	186
specL	118
BeadExplorer	6
ChromoViz	7
rgsepd	107
cpvSNP	116
gQTLBase	35
SAGElyzer	7
QuartPAC	96
rtracklayer	20557
XVector	49616
BiocInstaller	239
sapFinder	43
flowQ	41
SMAP	70
BiocGenerics	57494
mosaics	219
flowFP	204
plier	173
Rsubread	2163
motifRG	45
AllelicImbalance	160
Biostrings	48775
graph	19243
flowWorkspace	1145
AnnotationHub	11537
edgeR	23760
impute	10602
GeneGA	101
rSFFreader	36
reb	52
NuPoP	127
EBSeq	392
flowDensity	298
BiocStyle	5505
AffyTiling	41
bgx	119
microRNA	216
R453Plus1Toolbox	146
DEDS	48
DOQTL	30
openCyto	635
lumi	1217
QUALIFIER	46
flowStats	478
ROC	1110
DNAcopy	4976
mcaGUI	51
gaucho	32
ASEB	120
RGalaxy	49
meshr	174
dyebias	140
SpacePAC	125
massiR	121
seqplots	40
CompGO	39
maCorrPlot	118
flowClean	242
Genominator	53
LiquidAssociation	130
SomatiCA	29
simulatorZ	34
fmcsR	265
affyPLM	978
splots	234
oligo	1646
methyAnalysis	53
supraHex	378
HiTC	193
prot2D	33
MEDIPS	180
survcomp	1316
methVisual	48
GeneSelector	48
convert	185
Mulcom	134
epivizr	166
plateCore	47
oligoClasses	1626
XDE	148
GGtools	65
parody	141
casper	122
gage	841
pathview	4541
DAVIDQuery	31
ballgown	575
baySeq	483
gpls	253
CancerMutationAnalysis	50
IdeoViz	126
MeSHDbi	269
CALIB	55
HCsnip	36
charm	57
a4Classif	154
iontree	35
nnNorm	132
CNORode	151
tkWidgets	1392
FRGEpistasis	106
BADER	122
npGSEA	121
bigmemoryExtras	41
EDDA	41
dualKS	55
CexoR	128
iASeq	110
focalCall	29
MiRaGE	127
randPack	121
stepwiseCM	38
logitT	64
CRImage	151
ibh	116
maigesPack	81
DrugVsDisease	184
trigger	136
wavClusteR	117
RpsiXML	62
cancerclass	330
LPEadj	73
GSEAlm	147
SPEM	144
arrayMvout	131
metagene	49
rHVDM	50
tweeDEseq	180
COPDSexualDimorphism	6
clippda	137
ROntoTools	214
blima	120
EBarrays	227
IdMappingAnalysis	43
PREDA	138
chroGPS	50
pdmclass	49
ASSIGN	166
DEGseq	218
TEQC	145
OrderedList	137
rnaSeqMap	50
SANTA	105
MineICA	133
RefPlus	78
genoCN	113
DMRcate	1075
rGADEM	370
Basic4Cseq	130
MSGFgui	36
EBSeqHMM	56
systemPipeR	1218
MultiMed	108
biomvRCNS	133
SpeCond	140
chopsticks	151
PGSEA	88
hopach	340
ScISI	59
DASiR	29
vtpnet	133
DNaseR	9
compcodeR	139
riboSeqR	122
cosmiq	194
Metab	130
GraphAlignment	117
OSAT	143
cn.farms	132
flowPeaks	205
BGmix	44
CNVrd2	125
cqn	324
CGHnormaliter	136
cellGrowth	40
lmdme	126
MethylAid	144
HTSeqGenie	73
inSilicoDb	35
erccdashboard	138
netresponse	137
GeneR	17
simpleaffy	115
Clonality	54
ChIPseeker	1958
RMassBank	167
SLGI	62
MantelCorr	110
explorase	45
RedeR	325
PathNet	126
rMAT	45
shinyTANDEM	39
adSplit	141
HybridMTest	162
Mirsynergy	37
flowQB	44
STAN	43
GSRI	137
methylMnM	124
Cormotif	139
pepXMLTab	112
MotIV	61
gespeR	101
KEGGSOAP	22
sSeq	200
LMGene	52
makecdfenv	222
affylmGUI	171
oneChannelGUI	55
seqbias	73
nondetects	71
interactiveDisplay	154
MBCB	124
GeneTraffic	11
flowMatch	132
inSilicoMerging	38
rols	437
gwascat	629
phenoTest	167
Rmagpie	138
lapmix	115
cellHTS	46
panp	155
BRAIN	173
manta	47
GraphPAC	126
GENE.E	32
ffpe	133
RTN	218
virtualArray	14
VanillaICE	253
externalVector	14
DTA	122
maPredictDSC	121
TargetScore	129
MinimumDistance	151
DART	127
SSPA	114
RLMM	123
rTANDEM	44
PatientGeneSets	6
GeneSpring	12
RdbiPgSQL	11
SomaticSignatures	210
Rredland	8
biosvd	43
metaseqR	44
MoPS	29
RGSEA	123
msQC	0
keggorth	7
stam	8
GeneTS	7
GOsummaries	58
TSCAN	634
AIMS	377
TPP	155
FlowRepositoryR	34
birte	26
EMDomics	132
mAPKL	40
TIN	108
diffHic	159
podkat	119
BrowserVizDemo	17
CAnD	36
ENCODExplorer	34
RCyjs	118
SIMAT	113
SVM2CRM	28
CODEX	145
FISHalyseR	106
GENESIS	374
BEclear	128
caOmicsV	26
seqPattern	789
RareVariantVis	119
erma	155
TimerQuant	0
INSPEcT	117
AnnotationHubData	366
Path2PPI	112
systemPipeRdata	0
OperaMate	18
traseR	117
EnrichedHeatmap	600
exprExternal	3
rCGH	146
DAPAR	162
GEOsearch	16
SICtools	99
Prostar	127
ChIPComp	115
hierGWAS	115
dupRadar	159
lfa	294
Imetagene	30
RCy3	906
R4RNA	641
dcGSA	95
goCluster	2
globalSeq	98
RNAprobR	31
RnaSeqSampleSize	149
RnBeads	315
ProtGenerics	11490
flowVS	154
conumee	210
ENmix	301
netbenchmark	28
RBM	112
bamsignals	1021
ensembldb	9762
GreyListChIP	1017
IVAS	125
cytofkit	35
MatrixRider	114
BubbleTree	132
diggit	110
RUVcorr	114
skewr	105
PGA	32
fCI	107
Prize	28
ropls	1155
CNVPanelizer	119
iGC	109
myvariant	129
BBCAnalyzer	117
DiffLogo	122
SEPA	23
RiboProfiling	145
iCheck	113
metagenomeFeatures	31
NanoStringDiff	136
metaX	13
pathVar	37
synlet	105
miRLAB	128
OGSA	27
subSeq	123
y2hStat	3
DeMAND	95
ELMER	224
iCOBRA	285
consensusSeekeR	123
biomformat	5499
profileScoreDist	96
BioQC	160
transcriptR	117
Rhtslib	24313
sincell	114
soGGi	388
immunoClust	122
cogena	135
NanoStringQCPro	50
pandaR	155
muscle	374
RTCGAToolbox	525
SummarizedExperiment	40008
rcellminer	136
pwOmics	161
HIBAG	158
canceR	144
chromDraw	114
GoogleGenomics	24
similaRpeak	115
ggtree	22236
mogsa	261
acde	121
seq2pathway	207
pmm	103
CopywriteR	49
mirIntegrator	123
IONiseR	127
XBSeq	32
motifbreakR	228
SNAData	3
reposTools	3
GenomeBase	2
sbgr	12
destiny	672
TarSeqQC	39
variancePartition	953
SISPA	43
rnaseqcomp	116
GUIDEseq	135
DNABarcodes	179
MEAL	138
ABAEnrichment	35
LedPred	92
genotypeeval	41
biobroom	256
SWATH2stats	109
CNPBayes	25
iSNetwork	4
scde	412
bim	5
applera	3
rfcdmin	4
FamAgg	118
normalize450K	93
lpsymphony	933
kimod	16
Cardinal	254
gdsfmt	2100
coMET	99
ComplexHeatmap	15862
DMRcaller	141
gtrellis	168
InPAS	127
LowMACA	40
MethTargetedNGS	108
msa	1807
rGREAT	662
edge	151
regioneR	1883
LEA	612
BrowserViz	179
OmicsMarkeR	29
parglms	104
R3CPET	108
SELEX	122
sigsquared	110
MeSHSim	17
CausalR	116
eudysbiome	104
LOLA	263
ProteomicsAnnotationHubData	31
Oscope	124
mmgmos	4
FindMyFriends	33
Guitar	182
TCGAbiolinks	4416
SNPhood	115
RTCGA	480
miRcomp	114
HilbertCurve	138
gcatest	126
ldblock	139
GeneBreak	116
DChIPRep	31
sidap	0
widgetInvoke	6
mtbls2	0
multiClust	131
CrispRVariants	131
ggcyto	826
splineTCDiffExpr	1
GSALightning	86
PanVizGenerator	23
IHW	699
iCARE	173
SMITE	101
Mergeomics	109
contiBAIT	50
dada2	2397
ExpressionAtlas	222
HDF5Array	14806
doppelgangR	201
SwathXtend	102
Linnorm	222
AneuFinder	137
debrowser	154
miRNAmeConverter	107
scran	4718
DRIMSeq	299
pbcmc	11
DEFormats	263
MultiDataSet	1184
epivizrServer	139
LymphoSeq	114
ImmuneSpaceR	52
covRNA	104
netprioR	90
FunChIP	49
Director	75
geneplast	131
MADSEQ	106
fgsea	19217
maftools	2509
ASAFE	92
ImpulseDE	13
MODA	101
qsea	114
SNPediaR	89
RCAS	155
CancerSubtypes	80
eegc	51
LINC	16
SIMLR	212
SPLINTER	99
CancerInSilico	30
MoonlightR	127
GOpro	147
MAST	2083
KEGGlincs	114
yamss	110
flowPloidy	108
fCCAC	102
StarBioTrek	47
psichomics	111
chimeraviz	145
samExploreR	17
Chicago	130
QuaternaryProd	107
SC3	360
BasicSTARRseq	102
RGraph2js	104
metaCCA	136
RImmPort	81
GenRank	15
MBttest	96
biosigner	131
CONFESS	120
GMRP	100
DNAshapeR	125
recoup	106
MultiAssayExperiment	6295
GenoGAM	25
BadRegionFinder	105
splineTimeR	117
bacon	169
odseq	103
genbankr	68
ClusterSignificance	100
InteractionSet	1938
SpidermiR	54
CHRONOS	105
PureCN	197
Harman	175
bioCancer	116
msPurity	116
Pigengene	139
NetCRG	0
sights	106
crossmeta	167
GEM	98
GeneGeneInteR	98
ctsGE	103
BayesKnockdown	98
IPO	212
SVAPLSseq	15
GAprediction	93
Anaquin	103
PharmacoGx	277
signeR	121
Pi	55
DEsubs	100
readat	16
regsplice	100
meshes	191
PathoStat	181
FitHiC	114
SRGnet	18
crisprseekplus	39
BPRMeth	121
GRridge	30
RnaSeqGeneEdgeRQL	4
scone	148
scDD	168
treeio	21487
cellTree	28
sevenbridges	112
EmpiricalBrownsMethod	140
GenVisR	302
ROTS	232
chromPlot	219
ExperimentHub	7769
garfield	93
nucleoSim	103
Uniquorn	107
psygenet2r	105
sscu	96
QUBIC	154
CountClust	25
EBSEA	95
pcaExplorer	403
BatchQC	152
BgeeDB	162
pqsfinder	150
oppar	115
epivizrData	147
covEB	98
esetVis	110
dSimer	14
MetCirc	122
methylKit	656
rDGIdb	88
AMOUNTAIN	110
MGFR	105
CVE	18
LOBSTAHS	133
switchde	100
chromstaR	112
geneAttribution	105
CellMapper	97
geneXtendeR	99
uSORT	104
BaalChIP	112
statTarget	136
annotatr	482
MutationalPatterns	321
HelloRanges	147
phosphonormalizer	84
MWASTools	171
IWTomics	115
clusterSeq	109
RJMCMCNucleosomes	107
JunctionSeq	23
flowAI	561
tofsims	22
EWCE	270
tximport	3427
clustComp	111
scater	6979
cellity	111
ExperimentHubData	287
MethPed	101
genphen	22
OncoScore	110
CINdex	106
ISoLDE	82
EpiCluster	0
PCAN	106
isomiRs	160
Glimma	1052
MMDiff2	102
EGSEA	264
EGAD	110
diffloop	36
epivizrStandalone	104
clusterExperiment	321
CytoML	443
ccmap	125
normr	171
ASpli	145
DeepBlueR	38
recount	398
GRmetrics	131
alpine	42
YAPSA	128
MetaboSignal	157
gCrisprTools	108
philr	191
BiocWorkflowTools	195
synergyfinder	244
TVTB	110
bigmelon	111
M3Drop	594
matter	245
anamiR	15
yarn	146
CCPROMISE	107
proFIA	29
DelayedArray	42123
BUMHMM	124
sparseDOSSA	38
ramwas	121
gcapc	103
coseq	178
goSTAG	108
DMRScan	84
geneClassifiers	94
swfdr	107
RTNduals	113
cellscape	91
timescape	107
Organism.dplyr	413
rqt	82
Logolas	16
MaxContrastProjection	16
IntEREst	106
branchpointer	124
GA4GHclient	123
netReg	20
GenomicDataCommons	1037
flowTime	110
banocc	114
basecallQC	110
pathprint	15
ideal	132
metavizr	25
PPInfer	216
heatmaps	294
TSRchitect	24
IntramiRExploreR	93
coexnet	23
mfa	133
beachmat	15929
SingleCellExperiment	16089
SCnorm	146
EpiDISH	678
CEMiTool	183
diffuStats	110
oneSENSE	31
seqcombo	93
TFARM	95
miRsponge	12
amplican	128
cbaf	112
seqCAT	110
trena	33
ANF	107
MetaCyto	118
transcriptogramer	105
chromswitch	31
esATAC	129
PROPS	97
restfulSE	146
ivygapSE	99
gep2pep	98
omicsPrint	106
LineagePulse	36
rhvdm	0
affyplm	0
geoquery	1
biobase	1
mimager	109
funtooNorm	110
POST	17
mapscape	82
DaMiRseq	132
BiocFileCache	25893
BioMedR	5
cydar	132
BLMA	118
biotmle	106
cellbaseR	118
wiggleplotr	176
msgbsR	107
zinbwave	874
RProtoBufLib	2624
ClusterJudge	99
consensusOV	133
IrisSpatialFeatures	6
M3C	601
DMCHMM	96
Doscheda	108
microbiome	1762
miRmine	52
MIRA	125
slalom	136
progeny	462
mpra	112
bcSeq	99
MetaNeighbor	133
signet	12
biocinstaller	1
flowclust	0
GOfuncR	335
bsgenome	0
shortread	0
TCseq	452
splatter	444
ChIPexoQual	114
REMP	115
MIGSA	26
twoddpcr	98
EventPointer	116
hicrep	13
motifcounter	100
AnnotationFilter	10923
STROMA4	35
BioCor	119
methylInheritance	105
semisup	94
ATACseqQC	400
GA4GHshiny	110
ndexr	105
TReNA	4
miRBaseConverter	154
methInheritSim	109
motifmatchr	1376
Scale4C	109
DASC	3
Rhdf5lib	23180
scmap	242
epivizrChart	105
phenopath	125
RVS	95
BiocSklearn	129
TFHAZ	96
InterMineR	98
methyvim	17
ChIPanalyser	107
AUCell	2548
openPrimeRui	65
multiMiR	296
SeqSQC	190
TnT	76
panelcn.mops	118
oncomix	95
vulcan	105
rhdf5client	162
ontoProc	241
runibic	105
stageR	207
tenXplore	90
iterClust	40
iranges	1
biostrings	1
karyoploteR	813
MCbiclust	104
discordant	125
TCGAbiolinksGUI	36
sampleClassifier	107
GISPA	44
multiOmicsViz	46
NADfinder	107
epiNEM	154
RIVER	99
ImpulseDE2	22
IMAS	102
RaggedExperiment	833
GenomicScores	664
CATALYST	581
pgca	83
RITAN	112
IsoformSwitchAnalyzeR	284
RTNsurvival	103
scoreInvHap	106
OPWeight	96
GENIE3	1294
HiCcompare	266
rexposome	129
zFPKM	157
cytolib	2623
DEP	577
SPONGE	92
Rbowtie2	287
apeglm	3684
MSstatsQC	106
Onassis	22
TMixClust	121
BASiCS	166
openPrimeR	173
scfind	14
chromVAR	1187
bnbc	199
DelayedMatrixStats	16036
anota2seq	120
PathwaySplice	14
scPipe	126
JASPAR2018	5
methimpute	102
pcxn	55
topdownr	109
loci2path	104
TFEA.ChIP	126
annbuilder	0
MAGeCKFlute	353
pogos	138
srnadiff	91
CHARGE	13
enrichplot	19731
MetaGxOvarian	4
dmrseq	217
mCSEA	137
FELLA	163
perturbatr	16
phantasus	211
SummarizedBenchmark	40
decontam	1645
InTAD	101
hipathia	202
igvR	154
singscore	1471
sevenC	93
singleCellTK	340
RSeqAn	118
CAGEfightR	260
MSstatsQCgui	87
slingshot	1526
Rmmquant	98
CAMTHC	11
CellTrails	102
methylGSA	157
ipdDb	181
appreci8R	103
scruff	109
LRBaseDbi	107
miRSM	95
DEqMS	279
SIMD	95
sparsenetgls	84
MPRAnalyze	109
COCOA	122
HiCBricks	169
tRNAdbImport	127
ProteoMM	114
artMS	120
compartmap	40
RNASeqR	16
rbgl	1
tkwidgets	1
genomicfeatures	1
dnacopy	1
rScudo	93
DelayedDataFrame	99
deco	18
plpe	0
annotationdbi	1
seqlogo	0
RGMQL	63
DropletUtils	2479
snpmatrix	1
RcisTarget	1090
ChIPSeqSpike	18
Trendy	101
kissDE	106
omicplotR	105
Rgin	17
iSEE	518
martini	99
DominoEffect	101
GSEABenchmarkeR	123
SEPIRA	31
TissueEnrich	245
rWikiPathways	392
SparseSignatures	101
iCNV	106
CytoDx	123
ccfindR	118
PowerExplorer	15
mdp	92
RNAdecay	81
GDSArray	235
SIAMCAT	162
onlineFDR	74
kmknn	0
MetID	99
coRdon	197
GeneAccord	21
HPAanalyze	172
hierinf	79
NormalyzerDE	208
tximeta	997
FCBF	45
countsimQC	282
OMICsPCA	107
IsoCorrectoR	122
levi	78
LoomExperiment	612
MTseeker	7
topgo	0
PrecisionTrialDrawer	18
scFeatureFilter	91
GDCRNATools	233
omicRexposome	110
drawProteins	201
BiFET	105
TTMap	97
CTDquerier	99
DEComplexDisease	23
gsean	103
iteremoval	19
BEARscc	77
CellScore	96
ddPCRclust	121
scmeth	109
MDTS	88
GeneStructureTools	116
adaptest	13
ASICS	135
IMMAN	90
BioNetStat	78
RandomWalkRestartMH	56
BiocOncoTK	74
OmaDB	236
ORFik	200
iasva	103
FastqCleaner	120
sigFeature	293
gwasurvivr	128
icetea	95
sesame	809
slinky	18
mlm4omics	6
NBSplice	22
BUScorrect	96
consensus	88
nuCpos	89
celaref	110
brainImageR	6
EnhancedVolcano	5088
MetNet	98
plotGrouper	85
XINA	90
primirTSS	97
FoldGO	36
breakpointR	106
BiocPkgTools	163
gpart	22
ExCluster	80
edger	1
cicero	250
HIREewas	94
AffiXcan	97
consensusDE	105
AssessORF	184
QSutils	160
NeighborNet	32
Wrench	1612
BDMMAcorrect	36
TimeSeriesExperiment	20
cTRAP	111
gostats	1
category	1
rgraphviz	2
bayseq	1
cntools	1
VCFArray	102
logitt	1
roma	2
hmdbQuery	114
MACPET	20
powerTCR	321
GARS	105
vidger	152
tRNAscanImport	107
Sconify	97
DEScan2	110
diffcoexp	170
DEsingle	275
GateFinder	103
plyranges	1190
seqsetvis	120
missRows	97
diffcyt	466
TFutils	113
ChIC	24
SDAMS	103
TCGAutils	715
netSmooth	110
TxRegInfra	16
BiocVersion	60024
maser	160
Ularcirc	105
qPLEXanalyzer	99
GIGSEA	85
condcomp	7
OUTRIDER	207
ACE	131
INDEED	76
strandCheckR	100
SCBN	107
multiHiCcompare	161
BiocNeighbors	10937
ERSSA	99
REBET	93
KinSwingR	94
glmSparseNet	213
pkgdeptools	0
MSstatsTMT	286
bayNorm	124
mixOmics	2678
abseqR	101
transite	101
tRNA	144
universalmotif	882
PepsNMR	139
ADAM	191
decompTumor2Sig	145
IsoCorrectoRGUI	93
scTensor	108
DNABarcodeCompatibility	79
degseq	1
genomicranges	0
epihet	18
RCM	104
SpatialCPie	115
arrayexpress	0
SMAD	85
BiocSingular	12721
CNVRanger	123
Rcwl	116
fishpond	264
alevinQC	120
miRspongeR	85
qckitfastq	102
batchelor	3897
PoTRA	15
survtype	92
TNBC.CMS	41
GNET2	89
proBatch	29
DiscoRhythm	108
DeMixT	132
CellMixS	116
profileplyr	254
ngsReports	108
scMerge	495
scRecover	95
Structstrings	155
SubCellBarCode	98
metagene2	112
netboost	83
gpuMagic	85
SQLDataFrame	90
RNAmodR	123
RNAmodR.AlkAnilineSeq	97
TOAST	441
scGPS	119
Autotuner	11
AlphaBeta	93
brendaDb	94
scBFA	99
muscat	532
SingleR	4230
gramm4R	9
deltaCaptureC	90
CrossICC	5
idr2d	89
DMCFB	95
CNVfilteR	97
ASpediaFI	20
biscuiteer	108
MMUPHin	177
scPCA	122
scTGIF	193
HCAExplorer	8
MOSim	101
mitch	92
geometadb	1
CluMSID	95
PCAtools	1226
divergence	85
doseR	96
scds	487
projectR	116
BANDITS	118
Xeva	159
TreeSummarizedExperiment	2062
scAlign	20
mbkmeans	382
ADAMgui	104
CopyNumberPlots	161
GladiaTOX	86
HumanTranscriptomeCompendium	54
lipidr	153
nanotatoR	38
NBAMSeq	187
RNAmodR.RiboMethSeq	101
ViSEAGO	144
PhyloProfile	109
BUSpaRse	224
ncGTW	167
APAlyzer	114
Qtlizer	89
lionessR	97
BioTIP	111
pulsedSilac	13
PERFect	34
peakPantheR	95
Spaniel	113
signatureSearch	189
GCSscore	22
target	95
waddR	80
netboxr	16
biomart	1
widgettools	1
PAIRADISE	129
Rhisat2	223
adductomicsR	99
topconfects	183
bigPint	28
phemd	29
SpectralTAD	114
CoRegFlux	8
PrInCE	96
Modstrings	191
qsmooth	174
RcwlPipelines	116
ssrch	89
VennDetail	294
infercnv	1153
TPP2D	93
evaluomeR	100
CHETAH	130
MOFA	10
celda	772
PAST	90
pipeFrame	156
XCIR	12
KnowSeq	103
AWFisher	99
Maaslin2	959
SigsPack	89
GenomicOZone	114
calm	76
debCAM	100
SharedObject	136
pwrEWAS	25
microbiomeDASim	89
methylCC	110
MSstatsSampleSize	24
ssPATHS	87
flowSpy	8
oppti	84
MethCP	15
RNAsense	84
tradeSeq	557
MACSQuantifyR	74
cliqueMS	126
selectKSigs	89
onechannelgui	1
rsamtools	1
graper	87
iterativebmasurv	0
OVESEG	107
cytofast	12
geneticsbase	0
GAPGOM	18
cola	153
atSNP	121
BioMM	21
rmelting	95
Melissa	94
pram	97
CellBench	161
DepecheR	107
hypeR	139
pathwayPCA	108
sitePath	97
AMARETTO	192
OmicsLonDA	22
mnem	153
RepViz	92
sRACIPE	104
StructuralVariantAnnotation	240
SynMut	90
dcanr	170
enrichTF	49
animalcules	245
HCABrowser	10
arrayqualitymetrics	0
MMAPPR2	26
MetaVolcanoR	56
RNAmodR.ML	97
SBGNview	189
gemini	80
circRNAprofiler	112
SCANVIS	102
HiLDA	103
IgGeneUsage	87
fcScan	104
VariantExperiment	78
sojourner	19
proDA	257
SEtools	205
ReactomeGSA	240
GmicR	103
MEB	89
ALPS	11
gscreend	95
blacksheepr	105
LinkHD	100
OmnipathR	708
SAIGEgds	131
schex	178
scDblFinder	1618
DEWSeq	98
fcoex	18
methrix	124
flowSpecs	117
BiocSet	339
brainflowprobes	43
MBQN	97
ceRNAnetsim	78
chippeakanno	0
cummerbund	1
gseabase	0
CSSQ	88
PubScore	11
packFinder	95
frenchFISH	74
vasp	7
ribor	92
ribosomeProfilingQC	120
dittoSeq	1388
receptLoss	82
tscR	18
Dune	79
tidybulk	327
ROCpAI	79
BiocDockerManager	16
FRASER	147
MsCoreUtils	3600
spicyR	195
scry	281
SingleCellSignalR	242
CoreGx	318
HIPPO	89
glmGamPoi	4872
distinct	250
TADCompare	116
stats	1
SPsimSeq	189
DegNorm	95
Rtpca	101
scDataviz	115
RegEnrich	97
Nebulosa	1232
BiocIO	19674
zellkonverter	1496
idpr	102
pageRank	88
DEXICA	0
BSgenome.Hsapiens.UCSC.hg19	8
ISAnalytics	76
ncRNAtools	92
rsemmed	77
ChromSCape	99
MSPrep	177
MSstatsTMTPTM	7
proActiv	104
NanoMethViz	127
biocthis	258
MSstatsConvert	473
famat	96
GSgalgoR	85
MSEADbi	7
ADImpute	109
NewWave	116
VERSO	83
marr	89
megadepth	164
SpatialDecon	225
RLassoCox	87
vcfR	1
datasets	1
grid	1
KEGG.db	1
graphat	1
flowGraph	78
PFP	13
dichromat	3
magrittr	9
sendmailR	1
biobtreeR	80
easyreporting	91
EnMCB	94
scMAGeCK	12
reconsi	86
netDx	55
struct	166
GeneTonic	329
SCOPE	101
clustifyr	183
TreeAndLeaf	150
exomePeak2	88
sarks	86
pga	0
hicbricks	0
TAPseq	99
rrvgo	535
cmapR	438
EpiTxDb	106
NoRCE	92
GCSConnection	10
PloGO2	47
CiteFuse	115
scClassify	148
MatrixGenerics	41096
scHOT	95
SynExtend	95
optimalFlow	101
snapcount	94
BRGenomics	89
sangeranalyseR	216
BrainSABER	15
flowCut	151
org.Hs.eg.db	16
splines	1
stats4	1
tools	1
utils	1
HCAMatrixBrowser	4
corral	107
ToxicoGx	109
pipeComp	95
fmrs	131
scCB2	96
CytoTree	16
ILoReg	91
ggtreeExtra	1094
MesKit	116
HPAStainR	14
Omixer	89
VplotR	97
Spectra	1880
ResidualMatrix	3719
MethReg	86
PhosR	153
GenomeInfoDbData	19
preciseTAD	99
SeqGate	89
periodicDNA	84
MSstatsPTM	214
GCSFilesystem	9
systemPipeShiny	98
customCMPdb	102
microbiomeExplorer	108
BayesSpace	283
MOGAMUN	87
musicatk	118
tidySummarizedExperiment	342
AnVILPublish	94
SCFA	81
moanin	200
VarCon	82
methods	1
compiler	1
geneLenDataBase	11
hgu133plus2.db	7
GO.db	15
Homo.sapiens	6
degraph	1
GenomicDistributions	136
ReactomeContentService4R	100
rstudio	1
string	0
labeling	65
NPARC	107
CeTF	115
pmp	141
rSWeeP	92
MEAT	92
basilisk	3370
ga4ghclient	0
cindex	0
MicrobiotaProcess	505
gmoviz	91
GPA	88
OpenStats	79
randRotation	78
iSEEu	162
ExploreModelMatrix	214
MOMA	95
regutools	110
timeOmics	121
LACE	178
cBioPortalData	384
scuttle	9279
getDEE2	89
GWENA	246
GSEAmining	97
padma	95
bluster	5654
infinityFlow	116
rebook	158
snifter	157
POMA	198
TileDBArray	104
msImpute	232
TimiRGeN	36
nearBynding	86
recountmethylation	115
velociraptor	174
scp	240
rnaEditr	98
spatialHeatmap	227
Informeasure	83
Herper	146
recount3	297
MOFA2	531
cfDNAPro	113
lefser	531
scRepertoire	605
metabCombiner	133
metapod	4766
shinyepico	100
graphics	1
PFAM.db	12
TxDb.Hsapiens.UCSC.hg19.knownGene	6
CAEN	80
censcyt	94
GEOfastq	107
nempi	94
affio	0
BSgenome.Hsapiens.UCSC.hg38	11
bitops	109
dearseq	237
BgeeCall	83
SimFFPE	84
DIAlignR	63
structToolbox	145
DAMEfinder	97
basilisk.utils	3235
ctgGEM	11
omicsmarker	0
prostar	0
rlang	419
scTHI	84
eisaR	140
cytomapper	340
ROSeq	96
methylSig	120
GGPA	80
rfaRm	84
rhdf5filters	19681
dpeak	26
RNAAgeCalc	106
peco	89
spqn	86
TBSignatureProfiler	97
weitrix	93
sparseMatrixStats	15574
combi	119
metaseqR2	114
AnVIL	533
CARNIVAL	176
parallel	1
tcltk	1
multicrispr	96
simplifyEnrichment	956
PeacoQC	257
MouseFM	179
multiGSEA	166
RadioGx	102
wpm	96
MultiBaC	111
escape	430
transomics2cytoscape	103
SpatialExperiment	4505
uncoverappLib	96
QFeatures	2551
simpleSingleCell	0
UMI4Cats	92
hummingbird	81
Rfastp	173
RIPAT	29
metabolomicsWorkbenchR	110
SCATE	21
ANCOMBC	1228
FilterFFPE	97
facets	0
FScanR	20
aggregateBioVar	105
tomoda	92
bambu	300
GWAS.BAYES	94
dasper	16
CellaRepertorium	35
AnVILBilling	83
densvis	1352
tidySingleCellExperiment	233
ExperimentSubset	108
AlpsNMR	116
CNVgears	34
bnem	98
SplicingFactory	79
mina	74
base	1
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UTAR	0
mumosa	106
PoDCall	68
BumpyMatrix	484
sigpathway	1
ttgsea	88
brew	35
RColorBrewer	9
calib	0
RiboDiPA	90
SOMNiBUS	84
PhIPData	104
autonomics	88
lisaClust	166
VGAM	15
mia	1446
drugTargetInteractions	93
barcodetrackR	90
OSCA.basic	19
sechm	190
DelayedRandomArray	95
interacCircos	90
awst	87
POWSC	99
diffUTR	78
Rbec	92
systemPipeTools	91
HubPub	138
RCSL	90
ReactomeGraph4R	53
cosmosR	119
csawBook	4
ebimage	1
cageminer	98
scShapes	80
VAExprs	79
genomicInstability	98
veloviz	80
ggspavis	221
svaRetro	93
rGenomeTracks	86
scAnnotatR	198
MicrobiomeProfiler	157
imcRtools	253
cliProfiler	85
ODER	10
mosbi	85
TargetDecoy	96
epistack	86
deconvR	108
Cepo	159
biodbLipidmaps	38
rprimer	104
CNVMetrics	88
ggmanh	263
crisprBase	158
BOBaFIT	95
coMethDMR	102
IlluminaHumanMethylation450kmanifest	6
ichorCNA	0
mulcom	1
BSgenome.Hsapiens.NCBI.GRCh38	1
InteractiveComplexHeatmap	402
CONSTANd	83
NanoStringNCTools	397
ORFhunteR	88
TrajectoryUtils	1926
scClassifR	6
HiCDCPlus	125
MACSr	126
Summix	81
TrajectoryGeometry	72
midasHLA	85
MsBackendMgf	455
OSCA.workflows	31
CelliD	216
geva	86
OSCA.intro	53
fedup	85
CIMICE	86
BioNERO	263
methylscaper	117
mirTarRnaSeq	97
epidecodeR	84
CNViz	92
conclus	10
cellmigRation	79
FEAST	154
quantiseqr	524
tricycle	234
fgga	83
DExMA	96
multiSight	14
supersigs	170
MatrixQCvis	188
msqrob2	185
GenomicSuperSignature	102
epigraHMM	95
SingleMoleculeFootprinting	98
rawrr	205
spiky	81
BUSseq	95
dStruct	81
svaNUMT	91
Dino	91
segmenter	101
spatzie	80
NanoTube	114
NeuCA	54
scanMiRApp	86
enhancerHomologSearch	84
metapone	90
orthogene	345
ggmsa	543
nullranges	182
transformGamPoi	111
netOmics	25
benchdamic	102
RLSeq	29
CyTOFpower	61
MSstatsLiP	114
surfaltr	83
txcutr	83
biodbHmdb	98
RiboCrypt	88
scatterHatch	79
sccomp	127
clusterprofiler	1
KaryoploteR	0
OSCA	6
ramr	86
SCArray	106
GeomxTools	402
planet	209
fobitools	95
Travel	5
hca	92
miQC	144
MsBackendMassbank	112
PhenoGeneRanker	67
dce	92
OSCA.advanced	13
dir.expiry	3316
memes	240
condiments	132
CytoGLMM	101
cyanoFilter	91
wppi	67
MungeSumstats	968
treekoR	103
cbpManager	89
MQmetrics	21
KBoost	74
decoupleR	1208
XNAString	88
BloodGen3Module	131
HGC	93
vissE	140
MSstatsLOBD	85
DelayedTensor	90
m6Aboost	81
scanMiR	106
FLAMES	113
FindIT2	92
mitoClone2	109
iPath	75
GEOexplorer	95
BentoBox	0
methylclock	191
BioPlex	8
spatialDE	130
traviz	75
ProteoDisco	88
sparrow	343
MsBackendRawFileReader	98
biodbUniprot	84
pairkat	113
scTreeViz	88
GeoDiff	104
synapsis	77
NxtIRFcore	14
biodbKegg	72
pengls	74
netZooR	92
hermes	245
GBScleanR	109
ScaledMatrix	12509
MetaboCoreUtils	1805
MsFeatures	1401
VaSP	98
TraRe	12
MAGAR	137
satuRn	284
IRISFGM	21
ModCon	74
PDATK	172
ComPrAn	84
sitadela	85
miaViz	302
InterCellar	104
airpart	103
LRcell	85
ptairMS	83
DeepPINCS	88
ppcseq	91
OSCA.multisample	15
biodb	163
tLOH	84
granulator	144
SingleRBook	3
immunotation	86
miloR	418
epialleleR	96
mistyR	129
csdR	80
BindingSiteFinder	91
MAI	95
rmspc	78
plotgardener	259
bugsigdbr	200
tanggle	107
scReClassify	96
atena	93
tripr	82
biodbChebi	101
HPiP	88
monaLisa	196
cytoKernel	100
Cogito	87
microbiomeMarker	371
easier	121
miaSim	107
TRESS	99
CellBarcode	104
mfuzz	0
targetsearch	0
bayespeak	0
PanomiR	96
CompoundDb	267
MuData	99
biodbNci	92
ASURAT	96
single	43
cytoMEM	129
DepInfeR	80
extraChIPs	120
mbOmic	10
terraTCGAdata	96
BiocBaseUtils	6800
katdetectr	94
proteasy	24
scMET	81
RedisParam	78
RcppParallel	27
MASS	357
zenith	137
globals	61
htmlwidgets	90
htmltools	286
FNN	156
stringdist	15
geosphere	10
goSorensen	98
sparklyr	10
bookdown	32
evaluate	362
furrr	12
tidytree	24
BiocManager	352
gsmoothr	6
R.devices	8
Rsolnp	1
uwot	132
RcppAnnoy	35
NADA	6
Rfast	15
blob	39
formatR	20
hms	29
openssl	409
perm	9
samr	6
restfulr	8
docopt	6
sparsesvd	16
Signac	16
JASPAR2020	6
susieR	17
amgen.okta.client	1
Matrix	401
memoise	8
tidyr	228
packrat	9
rsconnect	24
plyr	61
webshot	19
plotly	71
campsismod	0
deSolve	3
devtools	16
webmockr	0
epiR	2
evd	4
xaringanthemer	1
dittodb	0
fork	1
gamlss.dist	3
forecast	7
ggPMX	1
ipaddress	0
lpSolveAPI	1
klaR	4
jsTreeR	1
interp	10
knitr	242
multcomp	118
pins	7
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precommit	1
pdftools	3
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randtoolbox	0
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R.rsp	1
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pointblank	1
recipes	47
Rsmlx	0
Rdpack	15
rhub	3
rclipboard	5
reda	0
s2	30
scales	82
roxygen2	166
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spaMM	0
sensitivity	1
tweenr	33
spam	11
tracee	1
statmod	2
vaultr	1
terra	27
RAthena	10
gplots	150
RPostgres	105
RandomFields	0
RandomFieldsUtils	0
bit64	98
bit	123
BMA	1
checkmate	210
leaps	10
rpart	52
xmlparsedata	0
mice	13
mlbench	11
loo	15
odbc	18
paws.security.identity	15
r2d3	1
rematch2	1
rcdk	9
plotmo	2
enc	0
expm	9
extraTrees	0
rJava	123
subselect	0
superpc	0
survMisc	1
yardstick	18
paws.cost.management	15
paws.storage	120
nloptr	50
SparseM	63
sp	68
fansi	114
readr	88
desc	74
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remotes	156
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ggsignif	7
here	1
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blme	7
IlluminaHumanMethylationEPICanno.ilm10b4.hg19	6
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isva	6
org.Rn.eg.db	10
ccdata	11
lsa	7
coloc	18
FDb.InfiniumMethylation.hg19	6
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MALDIquant	5
regioneReloaded	90
omada	79
phenomis	93
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BSgenome.Mmusculus.UCSC.mm9	0
easypar	0
gada	0
ggforestplot	0
leafcutter	0
mobster	0
MutationTimeR	0
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signature.tools.lib	0
signature.tools.lib.v2.1	0
signature.tools.lib.back	0
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xaringanExtra	1
qcNvs	0
gtable	207
hdrcde	6
abc.data	1
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afex	2
AlgDesign	4
bezier	0
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aplot	40
waiter	10
HiContacts	145
ggpointdensity	6
randomcoloR	6
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SPIAT	150
scBubbletree	89
Voyager	203
magrene	82
epistasisGA	80
ggtreeDendro	92
conquer	2
esquisse	15
collections	1
doBy	11
Exact	3
dotCall64	12
brms	1
gridtext	3
h2o	3
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octad	92
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simpleSeg	99
cardelino	96
highr	155
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rj.gd	1
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pd.atdschip.tiling	0
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timechange	177
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servr	6
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ks	4
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purr	0
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RUnit	11
sampling	1
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Iso	0
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np	0
oompaData	7
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pan	1
penalized	0
vapour	0
rtkore	0
gWidgets2tcltk	0
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RCX	95
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MetaboAnnotation	271
updateObject	78
CBEA	85
biodbMirbase	21
biodbNcbi	84
biodbExpasy	57
protGear	92
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borealis	94
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rifi	80
omicsViewer	84
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factR	88
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org.Mm.eg.db	13
RCurl	152
DBI	338
caret	33
gert	118
shiny	274
promises	258
fastmap	222
e1071	95
iterators	4
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readxl	36
tinytex	353
gmp	16
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httr	70
TxDb.Mmusculus.UCSC.mm10.knownGene	6
R.filesets	9
aroma.core	9
mutoss	9
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ALL	11
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GWASExactHW	7
reticulate	82
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filelock	48
EnsDb.Hsapiens.v75	6
TSP	14
egg	6
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callr	264
dtplyr	19
rvest	174
ggplot2	307
dplyr	97
vctrs	125
sass	280
Rcpp	347
renv	115
cluster	82
duckdb	7
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collapse	1
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drake	2
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farver	170
datawizard	15
emayili	2
clock	20
graphlayouts	46
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ymlthis	0
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insight	19
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modelr	21
palmerpenguins	1
nleqslv	1
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paws.compute	97
processx	274
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R.cache	1
qs	9
ps	332
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sm	1
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rticles	1
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ape	57
openxlsx	96
prettyunits	70
digest	415
BBmisc	1
robustbase	33
foreign	58
spatial	26
nnet	36
lintr	114
km.ci	1
logistf	10
mclust	11
segmented	31
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optparse	48
pander	2
party	89
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randomForest	38
rstan	14
rstanarm	1
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emdbook	10
styler	25
paws	15
pryr	10
pscl	2
RcppEigen	139
utf8	95
config	18
rex	1
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git2r	31
testthat	270
dimRed	1
ivpack	0
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IlluminaHumanMethylation450kanno.ilmn12.hg19	7
IlluminaHumanMethylationEPICanno.ilm10b2.hg19	6
admisc	7
demuxmix	267
consICA	173
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ctree	0
locfit	81
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pctGCdata	0
SNPlocs.Hsapiens.dbSNP151.GRCh38	0
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sROC	0
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TxDb.Hsapiens.UCSC.hg38.knownGene	1
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data.table	353
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minpack.lm	3
aws.s3	6
fds	6
repr	5
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lixoftConnectors.2	0
igraph	174
progressr	38
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ash	6
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vegan	35
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signifinder	73
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BioNAR	101
MSstatsShiny	134
graphql	1
rj	1
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ica	3
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pd.hg.u133.plus.2	0
pd.mouse430.2	0
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org.Cf.eg.db	0
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mediation	0
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NLP	3
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rgoslin	135
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TREG	84
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fastreeR	106
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qmtools	90
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tomoseqr	78
pareg	63
ompBAM	133
scDDboost	84
iSEEhex	156
syntenet	133
CTSV	94
SpliceWiz	150
deseq2	2
HiCDOC	105
crisprDesign	141
eds	381
DT	97
paws.common	123
glmnet	16
xfun	392
yaml	279
viridis	188
DRR	1
crosstalk	68
httpuv	268
lhs	15
xml2	95
gdata	40
lavaan	13
mnormt	12
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tidyverse	18
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umap	11
ATACseqTFEA	94
googlesheets4	24
sn	11
rmarkdown	351
nlme	210
GenomAutomorphism	77
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R.huge	8
aroma.apd	9
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metap	11
rARPACK	5
dqrng	49
zCompositions	11
dbplyr	200
tibble	18
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scrime	6
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ggdendro	16
qlcMatrix	16
PRROC	6
qap	10
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forcats	17
scidb	0
crisprVerse	112
cli	355
arrow	21
tidyselect	268
glue	206
shinyBS	7
shinyWidgets	72
lattice	154
arm	4
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binr	0
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dfidx	0
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flexdashboard	1
downlit	118
fda	11
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Epi	3
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dm	1
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ggdist	6
future	188
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lotri	0
metafor	6
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parameters	13
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treemapify	0
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Rcmdr	1
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dar	58
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tern.mmrm	2
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fairhub.r.client	1
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date	1
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scMultiSim	65
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KEGGdzPathwaysGEO	1
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PRONE	29
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SurfR	55
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oricvis	1
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MatrixExtra	2
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argusDS.trading.optimization	1
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knowYourCG	61
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monkey	1
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maditr	1
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ore	0
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od	1
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liger	2
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scrapper	39
ctsem	1
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EGSEAdata	1
BloodCancerMultiOmics2017	1
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altair	0
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V.PhyloMaker2	0
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iatlasGraphQLClient	1
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ICC	1
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R	1
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rprotobuflib	1
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QuantPsyc	1
dismo	1
IlluminaHumanMethylationEPICv2manifest	1
frictionless	1
aads.rnai	1
IPCAPS	1
crisprDesignData	1
deEndometrial	1
dslabs	1
CARTools	1
gGnome	1
r-library-rags-stash	1
daapr	1
dpdeploy	1
leafsync	1
widgetframe	1
treesitter.r	1
gotop	1
gp.version	1
derfinderData	1
castoRedc	1
singler	1
stdmchecks	0
mixture	0
ufs	0
parcats	0
rsatscan	0
XIFF	0
RNAmodR.Data	0
rayrender	0
genomicRanges	1
schoolmath	1
Rlabkey	1
parquetize	1
envalysis	1
taskscheduleR	1
eq5d	1
excelR	1
deconfectHelpers	1
wallace	1
SSDM	1
rangeModelMetadata	1
rgnparser	1
bib2df	1
chAMP	1
epuRate	1
merge	1
BPCells	1
dep	1
jonasrscripts	1
qualityTools	1
teal.goshawk	1
WA43966.shareR.3043877	1
DARAtools	1
bgs.ggtheme	1
ANCOMBCs	1
adehabitatLT	1
concordancer	1
rbacon	1
rintcal	1
Biocinstaller	1
cnvrd2	1
oceanflow	1
autometric	1
BCS.RSB	1
BCS.OptimizedDesignsForPrism	1
SimBU	1
taylor	1
CIBERSORTx	1
Polytect	12
ReducedExperiment	12
AlphaSimR	1
conflrhlx	1
geyser	11
qctools	1
h5mread	47
QGDA	1
leafgl	1
dipsaus	1
reactable.extras	1
ympes	1
standby	1
bonemarrowref.SeuratData	1
scarHRD	1
dandelionR	3
PhViD	1
chevreulShiny	0
chevreulPlot	0
teal.builder.checks	0
blocksdesign	1
turner	1
paran	1
ProfilerAPI2	1
PCDSpline	1
EmbedSOM	1
SpectraVis	0
MATRIX	1
rtables.officer	0
CePa	1
dgof	1
DAISIEprep	1
DoubletDecon	1
bWGR	1
SFSI	1
uwo	1
matrixGenerics	1
gggenomes	0
BulkSignalR	5
TreeTools	1
minga	1
pRRophetic	1
scQTLtools	6
MetaboDynamics	6
ChronosDSTools	1
ondisc	1
fastmat	1
COCONUT	1
chevreulProcess	2
s3	1
ccclust	1
CodeDepends	1
HiCParser	3
bedbaser	3
XeniumIO	4
qs2	1
AAVess	0
Rigraphlib	0
OSTA.data	0
CPSM	0
magittr	0
DWSClient	1
ParallelLogger	1
Andromeda	1
VISION	1
irGSEA	0
PopGenome	0
MATRIXS	1
pneumotypr	1
argusDS.studio.visualisations	1
vtable	1
koalaNetworkDriveData	1
seraut	1
bibliometrix	1
quanteda.textstats	1
switchstep	1
duckplyr	1
EnvDataQC	0
arpr	0
R6P	0
rtfmt	1
depmapSLr	1
cpp11bigwig	1
DropletQC	1
emoji	1
beachmat.tiledb	14
dropletutils	1
Runiversal	1
BARTools	1
hta.ard	1
popEpi	1
iclusterplus	1
colorSpec	1
tidygate	1
cclust	1
gneDB	1
ELViS	2
reformulas	1
BioInstaller	1
SSOAP	1
jazzPanda	0
poem	0
stabilityTools	1
obliqueRF	1
sparsevctrs	0
cicerone	1
mmrbws	1
ggsurfvit	1
RTriangle	1
Seraut	1
org.Ssalar.eg.db	1
verification	0
gsEasy	0
hypothesis	1
revealxpress	1
bonsai	1
DGCA	0
eatRep	1
TrIdent	11
PopVar	1
SpATS	1
mist	3
statgenSTA	1
smoppix	9
xCell2	10
maaslin3	9
autoslideR	1
FCPS	1
protoclust	1
SpatialExperimentIO	11
biocmake	7
PICB	7
sdw	1
SurvMetrics	1
rempsyc	1
MSstatsBioNet	3
SRAdbV2	1
CARDspa	1
PSweight	1
terapadog	0
TENET	0
clixyzabc	1
desplot	1
random.cdisc.data	1
nc	1
ctv	1
CETS	1
BioMarks.ProteomeR	1
pmqtsreport	0
NNsig	1
openalexR	1
MCODE	1
seqtime	0
tracklayer	0
NetBenchmark	0
TropFishR	0
arkdb	0
BayesMendel	0
RaMS	1
SpatialPack	1