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4289774814,4294967264,4278255360,4281519410,4294635750,4294902015,4286578688,4284927402,4278190285,4290401747,4287852763,4282168177,4286277870,4278254234,4282962380,4291237253,4279834992,4294311930,4294960353,4294960309,4294958765,4278190208,4294833638,4286611456,4285238819,4294944E3,4294919424,4292505814,4293847210,4288215960,4289720046,4292571283,4294963157,4294957753,4291659071,4294951115,4292714717,4289781990,4286578816,4294901760,4290547599,4282477025,4287317267,4294606962,4294222944,4281240407,
4294964718,4288696877,4290822336,4287090411,4285160141,4285563024,4294966010,4278255487,4282811060,4291998860,4278222976,4292394968,4294927175,4282441936,4293821166,4294303411,4294967295,4294309365,4294967040,4288335154,4289714175,4281240407,4288217011,4286611584,4286611584,4294945723,4294919424,4294375029]);b.mapJavaScriptColors=new java.util.Hashtable;for(b=JU.CU.colorNames.length;0<=--b;)JU.CU.mapJavaScriptColors.put(JU.CU.colorNames[b],Integer.$valueOf(JU.CU.colorArgbs[b]))});r("JU");v(null,"JU.DF",
["JU.PT","$.SB"],function(){var b=s(JU,"DF",null);b.setUseNumberLocalization=c(b,"setUseNumberLocalization",function(a){JU.DF.useNumberLocalization[0]=a?Boolean.TRUE:Boolean.FALSE},"~B");b.formatDecimalDbl=c(b,"formatDecimalDbl",function(a,d){return 2147483647==d||-Infinity==a||Infinity==a||Double.isNaN(a)?""+a:JU.DF.formatDecimal(a,d)},"~N,~N");b.formatDecimal=c(b,"formatDecimal",function(a,d){if(-Infinity==a||(Infinity==a||Double.isNaN(a))||2147483647==d)return""+a;var b=0>a;b&&(a=-a);var c;if(0>
d){d=-d;d>JU.DF.formattingStrings.length&&(d=JU.DF.formattingStrings.length);if(0==a)return JU.DF.formattingStrings[d-1]+"E+0";var f;1>Math.abs(a)?(c=100,f=1E-100*a):(c=-100,f=1E100*a);f=(""+f).toUpperCase();var g=f.indexOf("E");0>g?f=""+a:(c=JU.PT.parseInt(f.substring(g+(f.indexOf("E+")==g?2:1)))+c,f=JU.PT.parseFloat(f.substring(0,g)),f=JU.DF.formatDecimal(f,d-1),f.startsWith("10.")&&(f=JU.DF.formatDecimal(1,d-1),c++));return(b?"-":"")+f+"E"+(0<=c?"+":"")+c}d>=JU.DF.formattingStrings.length&&(d=
JU.DF.formattingStrings.length-1);f=(""+a).toUpperCase();c=f.indexOf(".");if(0>c)return(b?"-":"")+f+JU.DF.formattingStrings[d].substring(1);g=f.indexOf("E-");0<g&&(c=JU.PT.parseInt(f.substring(g+1)),f="0."+"0000000000000000000000000000000000000000".substring(0,-c-1)+f.substring(0,1)+f.substring(2,g),c=1);g=f.indexOf("E");0<g&&(c=JU.PT.parseInt(f.substring(g+1)),f=f.substring(0,1)+f.substring(2,g)+"0000000000000000000000000000000000000000",f=f.substring(0,c+1)+"."+f.substring(c+1),c=f.indexOf("."));
var g=f.length,e=d+c+1;if(e<g&&"5"<=f.charAt(e))return JU.DF.formatDecimal((b?-1:1)*(a+JU.DF.formatAdds[d]),d);var l=f.substring(0,0==d?c:++c),e=JU.SB.newS(l);b&&(l.equals("0.")&&d+2<=g&&f.substring(2,2+d).equals("0000000000000000000000000000000000000000".substring(0,d)))&&(b=!1);for(l=0;l<d;l++,c++)c<g?e.appendC(f.charAt(c)):e.appendC("0");f=(b?"-":"")+e;return Boolean.TRUE.equals(JU.DF.useNumberLocalization[0])?f:f.$replace(",",".")},"~N,~N");b.formatDecimalTrimmed=c(b,"formatDecimalTrimmed",function(a,
d){for(var b=JU.DF.formatDecimalDbl(a,d),c=b.length-1;0<=c&&"0"==b.charAt(c);)c--;return b.substring(0,c+1)},"~N,~N");b.formatDecimalTrimmed0=c(b,"formatDecimalTrimmed0",function(a,d){for(var b=JU.DF.formatDecimalDbl(a,d),c=b.length-1,f=b.indexOf(".")+1;c>f&&"0"==b.charAt(c);)c--;return b.substring(0,c+1)},"~N,~N");b.formattingStrings=B(-1,"0 0.0 0.00 0.000 0.0000 0.00000 0.000000 0.0000000 0.00000000 0.000000000 0.0000000000 0.00000000000 0.000000000000".split(" "));b.formatAdds=O(-1,[0.5,0.05,0.005,
5E-4,5E-5,5E-6,5E-7,5E-8,5E-9,5E-10,5E-11,5E-12,5E-13]);b.useNumberLocalization=B(-1,[Boolean.TRUE])});r("JU");v(["java.lang.Enum"],"JU.Encoding",null,function(){var b=s(JU,"Encoding",Enum);j(b,"NONE",0,[]);j(b,"UTF8",1,[]);j(b,"UTF_16BE",2,[]);j(b,"UTF_16LE",3,[]);j(b,"UTF_32BE",4,[]);j(b,"UTF_32LE",5,[])});r("JU");v(["java.util.ArrayList"],"JU.Lst",null,function(){var b=s(JU,"Lst",java.util.ArrayList);c(b,"addLast",function(a){return this.add1(a)},"~O");e(b,"add",function(a,d){return this.add2(a,
d)},"~N,~O");c(b,"removeItemAt",function(a){return this._removeItemAt(a)},"~N");c(b,"removeObj",function(a){return this._removeObject(a)},"~O")});r("JU");u=p(function(){this.m22=this.m21=this.m20=this.m12=this.m11=this.m10=this.m02=this.m01=this.m00=0;q(this,arguments)},JU,"M34",null);c(u,"setAA33",function(b){var a=b.x,d=b.y,h=b.z;b=b.angle;var c=Math.sqrt(a*a+d*d+h*h),c=1/c,a=a*c,d=d*c,h=h*c,f=Math.cos(b);b=Math.sin(b);c=1-f;this.m00=f+a*a*c;this.m11=f+d*d*c;this.m22=f+h*h*c;var f=a*d*c,g=h*b;this.m01=
f-g;this.m10=f+g;f=a*h*c;g=d*b;this.m02=f+g;this.m20=f-g;f=d*h*c;g=a*b;this.m12=f-g;this.m21=f+g},"JU.A4");c(u,"rotate",function(b){this.rotate2(b,b)},"JU.T3");c(u,"rotate2",function(b,a){a.set(this.m00*b.x+this.m01*b.y+this.m02*b.z,this.m10*b.x+this.m11*b.y+this.m12*b.z,this.m20*b.x+this.m21*b.y+this.m22*b.z)},"JU.T3,JU.T3");c(u,"setM33",function(b){this.m00=b.m00;this.m01=b.m01;this.m02=b.m02;this.m10=b.m10;this.m11=b.m11;this.m12=b.m12;this.m20=b.m20;this.m21=b.m21;this.m22=b.m22},"JU.M34");c(u,
"clear33",function(){this.m00=this.m01=this.m02=this.m10=this.m11=this.m12=this.m20=this.m21=this.m22=0});c(u,"set33",function(b,a,d){switch(b){case 0:switch(a){case 0:this.m00=d;return;case 1:this.m01=d;return;case 2:this.m02=d;return}break;case 1:switch(a){case 0:this.m10=d;return;case 1:this.m11=d;return;case 2:this.m12=d;return}break;case 2:switch(a){case 0:this.m20=d;return;case 1:this.m21=d;return;case 2:this.m22=d;return}}this.err()},"~N,~N,~N");c(u,"get33",function(b,a){switch(b){case 0:switch(a){case 0:return this.m00;
case 1:return this.m01;case 2:return this.m02}break;case 1:switch(a){case 0:return this.m10;case 1:return this.m11;case 2:return this.m12}break;case 2:switch(a){case 0:return this.m20;case 1:return this.m21;case 2:return this.m22}}this.err();return 0},"~N,~N");c(u,"setRow33",function(b,a){switch(b){case 0:this.m00=a[0];this.m01=a[1];this.m02=a[2];break;case 1:this.m10=a[0];this.m11=a[1];this.m12=a[2];break;case 2:this.m20=a[0];this.m21=a[1];this.m22=a[2];break;default:this.err()}},"~N,~A");c(u,"getRow33",
function(b,a){switch(b){case 0:a[0]=this.m00;a[1]=this.m01;a[2]=this.m02;return;case 1:a[0]=this.m10;a[1]=this.m11;a[2]=this.m12;return;case 2:a[0]=this.m20;a[1]=this.m21;a[2]=this.m22;return}this.err()},"~N,~A");c(u,"setColumn33",function(b,a){switch(b){case 0:this.m00=a[0];this.m10=a[1];this.m20=a[2];break;case 1:this.m01=a[0];this.m11=a[1];this.m21=a[2];break;case 2:this.m02=a[0];this.m12=a[1];this.m22=a[2];break;default:this.err()}},"~N,~A");c(u,"getColumn33",function(b,a){switch(b){case 0:a[0]=
this.m00;a[1]=this.m10;a[2]=this.m20;break;case 1:a[0]=this.m01;a[1]=this.m11;a[2]=this.m21;break;case 2:a[0]=this.m02;a[1]=this.m12;a[2]=this.m22;break;default:this.err()}},"~N,~A");c(u,"add33",function(b){this.m00+=b.m00;this.m01+=b.m01;this.m02+=b.m02;this.m10+=b.m10;this.m11+=b.m11;this.m12+=b.m12;this.m20+=b.m20;this.m21+=b.m21;this.m22+=b.m22},"JU.M34");c(u,"sub33",function(b){this.m00-=b.m00;this.m01-=b.m01;this.m02-=b.m02;this.m10-=b.m10;this.m11-=b.m11;this.m12-=b.m12;this.m20-=b.m20;this.m21-=
b.m21;this.m22-=b.m22},"JU.M34");c(u,"mul33",function(b){this.m00*=b;this.m01*=b;this.m02*=b;this.m10*=b;this.m11*=b;this.m12*=b;this.m20*=b;this.m21*=b;this.m22*=b},"~N");c(u,"transpose33",function(){var b=this.m01;this.m01=this.m10;this.m10=b;b=this.m02;this.m02=this.m20;this.m20=b;b=this.m12;this.m12=this.m21;this.m21=b});c(u,"setXRot",function(b){var a=Math.cos(b);b=Math.sin(b);this.m00=1;this.m10=this.m02=this.m01=0;this.m11=a;this.m12=-b;this.m20=0;this.m21=b;this.m22=a},"~N");c(u,"setYRot",
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function(){throw new ArrayIndexOutOfBoundsException("matrix column/row out of bounds");});r("JU");v(["JU.M34"],"JU.M3",["JU.T3"],function(){var b=s(JU,"M3",JU.M34,java.io.Serializable);b.newA9=c(b,"newA9",function(a){var d=new JU.M3;d.setA(a);return d},"~A");b.newM3=c(b,"newM3",function(a){var d=new JU.M3;if(null==a)return d.setScale(1),d;d.m00=a.m00;d.m01=a.m01;d.m02=a.m02;d.m10=a.m10;d.m11=a.m11;d.m12=a.m12;d.m20=a.m20;d.m21=a.m21;d.m22=a.m22;return d},"JU.M3");c(b,"setScale",function(a){this.clear33();
this.m00=this.m11=this.m22=a},"~N");c(b,"setM3",function(a){this.setM33(a)},"JU.M34");c(b,"setA",function(a){this.m00=a[0];this.m01=a[1];this.m02=a[2];this.m10=a[3];this.m11=a[4];this.m12=a[5];this.m20=a[6];this.m21=a[7];this.m22=a[8]},"~A");c(b,"setElement",function(a,d,b){this.set33(a,d,b)},"~N,~N,~N");c(b,"getElement",function(a,d){return this.get33(a,d)},"~N,~N");c(b,"setRow",function(a,d,b,c){switch(a){case 0:this.m00=d;this.m01=b;this.m02=c;break;case 1:this.m10=d;this.m11=b;this.m12=c;break;
case 2:this.m20=d;this.m21=b;this.m22=c;break;default:this.err()}},"~N,~N,~N,~N");c(b,"setRowV",function(a,d){switch(a){case 0:this.m00=d.x;this.m01=d.y;this.m02=d.z;break;case 1:this.m10=d.x;this.m11=d.y;this.m12=d.z;break;case 2:this.m20=d.x;this.m21=d.y;this.m22=d.z;break;default:this.err()}},"~N,JU.T3");c(b,"setRowA",function(a,d){this.setRow33(a,d)},"~N,~A");e(b,"getRow",function(a,d){this.getRow33(a,d)},"~N,~A");c(b,"setColumn3",function(a,d,b,c){switch(a){case 0:this.m00=d;this.m10=b;this.m20=
c;break;case 1:this.m01=d;this.m11=b;this.m21=c;break;case 2:this.m02=d;this.m12=b;this.m22=c;break;default:this.err()}},"~N,~N,~N,~N");c(b,"setColumnV",function(a,d){switch(a){case 0:this.m00=d.x;this.m10=d.y;this.m20=d.z;break;case 1:this.m01=d.x;this.m11=d.y;this.m21=d.z;break;case 2:this.m02=d.x;this.m12=d.y;this.m22=d.z;break;default:this.err()}},"~N,JU.T3");c(b,"getColumnV",function(a,d){switch(a){case 0:d.x=this.m00;d.y=this.m10;d.z=this.m20;break;case 1:d.x=this.m01;d.y=this.m11;d.z=this.m21;
break;case 2:d.x=this.m02;d.y=this.m12;d.z=this.m22;break;default:this.err()}},"~N,JU.T3");c(b,"setColumnA",function(a,d){this.setColumn33(a,d)},"~N,~A");c(b,"getColumn",function(a,d){this.getColumn33(a,d)},"~N,~A");c(b,"add",function(a){this.add33(a)},"JU.M3");c(b,"sub",function(a){this.sub33(a)},"JU.M3");c(b,"transpose",function(){this.transpose33()});c(b,"transposeM",function(a){this.setM33(a);this.transpose33()},"JU.M3");c(b,"invertM",function(a){this.setM33(a);this.invert()},"JU.M3");c(b,"invert",
function(){var a=this.determinant3();0!=a&&(a=1/a,this.set9(this.m11*this.m22-this.m12*this.m21,this.m02*this.m21-this.m01*this.m22,this.m01*this.m12-this.m02*this.m11,this.m12*this.m20-this.m10*this.m22,this.m00*this.m22-this.m02*this.m20,this.m02*this.m10-this.m00*this.m12,this.m10*this.m21-this.m11*this.m20,this.m01*this.m20-this.m00*this.m21,this.m00*this.m11-this.m01*this.m10),this.scale(a))});c(b,"setAsXRotation",function(a){this.setXRot(a);return this},"~N");c(b,"setAsYRotation",function(a){this.setYRot(a);
return this},"~N");c(b,"setAsZRotation",function(a){this.setZRot(a);return this},"~N");c(b,"scale",function(a){this.mul33(a)},"~N");c(b,"mul",function(a){this.mul2(this,a)},"JU.M3");c(b,"mul2",function(a,d){this.set9(a.m00*d.m00+a.m01*d.m10+a.m02*d.m20,a.m00*d.m01+a.m01*d.m11+a.m02*d.m21,a.m00*d.m02+a.m01*d.m12+a.m02*d.m22,a.m10*d.m00+a.m11*d.m10+a.m12*d.m20,a.m10*d.m01+a.m11*d.m11+a.m12*d.m21,a.m10*d.m02+a.m11*d.m12+a.m12*d.m22,a.m20*d.m00+a.m21*d.m10+a.m22*d.m20,a.m20*d.m01+a.m21*d.m11+a.m22*d.m21,
a.m20*d.m02+a.m21*d.m12+a.m22*d.m22)},"JU.M3,JU.M3");e(b,"equals",function(a){return!C(a,"JU.M3")?!1:this.m00==a.m00&&this.m01==a.m01&&this.m02==a.m02&&this.m10==a.m10&&this.m11==a.m11&&this.m12==a.m12&&this.m20==a.m20&&this.m21==a.m21&&this.m22==a.m22},"~O");e(b,"hashCode",function(){return JU.T3.floatToIntBits(this.m00)^JU.T3.floatToIntBits(this.m01)^JU.T3.floatToIntBits(this.m02)^JU.T3.floatToIntBits(this.m10)^JU.T3.floatToIntBits(this.m11)^JU.T3.floatToIntBits(this.m12)^JU.T3.floatToIntBits(this.m20)^
JU.T3.floatToIntBits(this.m21)^JU.T3.floatToIntBits(this.m22)});c(b,"setZero",function(){this.clear33()});c(b,"set9",function(a,d,b,c,f,g,e,l,m){this.m00=a;this.m01=d;this.m02=b;this.m10=c;this.m11=f;this.m12=g;this.m20=e;this.m21=l;this.m22=m},"~N,~N,~N,~N,~N,~N,~N,~N,~N");e(b,"toString",function(){return"[["+this.m00+"\t"+this.m01+"\t"+this.m02+"]\n  ["+this.m10+"\t"+this.m11+"\t"+this.m12+"]\n  ["+this.m20+"\t"+this.m21+"\t"+this.m22+"]]"});c(b,"setAA",function(a){this.setAA33(a);return this},
"JU.A4");c(b,"setAsBallRotation",function(a,d,b){var c=Math.sqrt(d*d+b*b),f=c*a;if(0==f)return this.setScale(1),!1;a=Math.cos(f);f=Math.sin(f);b=-b/c;d/=c;c=a-1;this.m00=1+c*b*b;this.m01=this.m10=c*b*d;this.m20=-(this.m02=f*b);this.m11=1+c*d*d;this.m21=-(this.m12=f*d);this.m22=a;return!0},"~N,~N,~N");c(b,"isRotation",function(){return 0.001>Math.abs(this.determinant3()-1)})});r("JU");v(["JU.M34"],"JU.M4",["JU.T3"],function(){var b=p(function(){this.m33=this.m32=this.m31=this.m30=this.m23=this.m13=
this.m03=0;q(this,arguments)},JU,"M4",JU.M34);b.newA16=c(b,"newA16",function(a){var d=new JU.M4;d.m00=a[0];d.m01=a[1];d.m02=a[2];d.m03=a[3];d.m10=a[4];d.m11=a[5];d.m12=a[6];d.m13=a[7];d.m20=a[8];d.m21=a[9];d.m22=a[10];d.m23=a[11];d.m30=a[12];d.m31=a[13];d.m32=a[14];d.m33=a[15];return d},"~A");b.newM4=c(b,"newM4",function(a){var d=new JU.M4;if(null==a)return d.setIdentity(),d;d.setToM3(a);d.m03=a.m03;d.m13=a.m13;d.m23=a.m23;d.m30=a.m30;d.m31=a.m31;d.m32=a.m32;d.m33=a.m33;return d},"JU.M4");b.newMV=
c(b,"newMV",function(a,d){var b=new JU.M4;b.setMV(a,d);return b},"JU.M3,JU.T3");c(b,"setZero",function(){this.clear33();this.m03=this.m13=this.m23=this.m30=this.m31=this.m32=this.m33=0});c(b,"setIdentity",function(){this.setZero();this.m00=this.m11=this.m22=this.m33=1});c(b,"setM4",function(a){this.setM33(a);this.m03=a.m03;this.m13=a.m13;this.m23=a.m23;this.m30=a.m30;this.m31=a.m31;this.m32=a.m32;this.m33=a.m33;return this},"JU.M4");c(b,"setMV",function(a,d){this.setM33(a);this.setTranslation(d);
this.m33=1},"JU.M3,JU.T3");c(b,"setToM3",function(a){this.setM33(a);this.m03=this.m13=this.m23=this.m30=this.m31=this.m32=0;this.m33=1},"JU.M34");c(b,"setToAA",function(a){this.setIdentity();this.setAA33(a)},"JU.A4");c(b,"setA",function(a){this.m00=a[0];this.m01=a[1];this.m02=a[2];this.m03=a[3];this.m10=a[4];this.m11=a[5];this.m12=a[6];this.m13=a[7];this.m20=a[8];this.m21=a[9];this.m22=a[10];this.m23=a[11];this.m30=a[12];this.m31=a[13];this.m32=a[14];this.m33=a[15]},"~A");c(b,"setTranslation",function(a){this.m03=
a.x;this.m13=a.y;this.m23=a.z},"JU.T3");c(b,"setElement",function(a,d,b){if(3>a&&3>d)this.set33(a,d,b);else{(3<a||3<d)&&this.err();switch(a){case 0:this.m03=b;return;case 1:this.m13=b;return;case 2:this.m23=b;return}switch(d){case 0:this.m30=b;break;case 1:this.m31=b;break;case 2:this.m32=b;break;case 3:this.m33=b}}},"~N,~N,~N");c(b,"getElement",function(a,d){if(3>a&&3>d)return this.get33(a,d);if(3<a||3<d)return this.err(),0;switch(a){case 0:return this.m03;case 1:return this.m13;case 2:return this.m23;
default:switch(d){case 0:return this.m30;case 1:return this.m31;case 2:return this.m32;default:return this.m33}}},"~N,~N");c(b,"getTranslation",function(a){a.x=this.m03;a.y=this.m13;a.z=this.m23},"JU.T3");c(b,"getRotationScale",function(a){a.m00=this.m00;a.m01=this.m01;a.m02=this.m02;a.m10=this.m10;a.m11=this.m11;a.m12=this.m12;a.m20=this.m20;a.m21=this.m21;a.m22=this.m22},"JU.M3");c(b,"setRotationScale",function(a){this.m00=a.m00;this.m01=a.m01;this.m02=a.m02;this.m10=a.m10;this.m11=a.m11;this.m12=
a.m12;this.m20=a.m20;this.m21=a.m21;this.m22=a.m22},"JU.M3");c(b,"setRowA",function(a,d){3>a&&this.setRow33(a,d);switch(a){case 0:this.m03=d[3];return;case 1:this.m13=d[3];return;case 2:this.m23=d[3];return;case 3:this.m30=d[0];this.m31=d[1];this.m32=d[2];this.m33=d[3];return}this.err()},"~N,~A");e(b,"getRow",function(a,d){3>a&&this.getRow33(a,d);switch(a){case 0:d[3]=this.m03;return;case 1:d[3]=this.m13;return;case 2:d[3]=this.m23;return;case 3:d[0]=this.m30;d[1]=this.m31;d[2]=this.m32;d[3]=this.m33;
return}this.err()},"~N,~A");c(b,"setColumn4",function(a,d,b,c,f){0==a?(this.m00=d,this.m10=b,this.m20=c,this.m30=f):1==a?(this.m01=d,this.m11=b,this.m21=c,this.m31=f):2==a?(this.m02=d,this.m12=b,this.m22=c,this.m32=f):3==a?(this.m03=d,this.m13=b,this.m23=c,this.m33=f):this.err()},"~N,~N,~N,~N,~N");c(b,"setColumnA",function(a,d){3>a&&this.setColumn33(a,d);switch(a){case 0:this.m30=d[3];break;case 1:this.m31=d[3];break;case 2:this.m32=d[3];break;case 3:this.m03=d[0];this.m13=d[1];this.m23=d[2];this.m33=
d[3];break;default:this.err()}},"~N,~A");c(b,"getColumn",function(a,d){3>a&&this.getColumn33(a,d);switch(a){case 0:d[3]=this.m30;break;case 1:d[3]=this.m31;break;case 2:d[3]=this.m32;break;case 3:d[0]=this.m03;d[1]=this.m13;d[2]=this.m23;d[3]=this.m33;break;default:this.err()}},"~N,~A");c(b,"sub",function(a){this.sub33(a);this.m03-=a.m03;this.m13-=a.m13;this.m23-=a.m23;this.m30-=a.m30;this.m31-=a.m31;this.m32-=a.m32;this.m33-=a.m33},"JU.M4");c(b,"add",function(a){this.m03+=a.x;this.m13+=a.y;this.m23+=
a.z},"JU.T3");c(b,"transpose",function(){this.transpose33();var a=this.m03;this.m03=this.m30;this.m30=a;a=this.m13;this.m13=this.m31;this.m31=a;a=this.m23;this.m23=this.m32;this.m32=a});c(b,"invert",function(){var a=this.determinant4();if(0==a)return this;a=1/a;this.set(this.m11*(this.m22*this.m33-this.m23*this.m32)+this.m12*(this.m23*this.m31-this.m21*this.m33)+this.m13*(this.m21*this.m32-this.m22*this.m31),this.m21*(this.m02*this.m33-this.m03*this.m32)+this.m22*(this.m03*this.m31-this.m01*this.m33)+
this.m23*(this.m01*this.m32-this.m02*this.m31),this.m31*(this.m02*this.m13-this.m03*this.m12)+this.m32*(this.m03*this.m11-this.m01*this.m13)+this.m33*(this.m01*this.m12-this.m02*this.m11),this.m01*(this.m13*this.m22-this.m12*this.m23)+this.m02*(this.m11*this.m23-this.m13*this.m21)+this.m03*(this.m12*this.m21-this.m11*this.m22),this.m12*(this.m20*this.m33-this.m23*this.m30)+this.m13*(this.m22*this.m30-this.m20*this.m32)+this.m10*(this.m23*this.m32-this.m22*this.m33),this.m22*(this.m00*this.m33-this.m03*
this.m30)+this.m23*(this.m02*this.m30-this.m00*this.m32)+this.m20*(this.m03*this.m32-this.m02*this.m33),this.m32*(this.m00*this.m13-this.m03*this.m10)+this.m33*(this.m02*this.m10-this.m00*this.m12)+this.m30*(this.m03*this.m12-this.m02*this.m13),this.m02*(this.m13*this.m20-this.m10*this.m23)+this.m03*(this.m10*this.m22-this.m12*this.m20)+this.m00*(this.m12*this.m23-this.m13*this.m22),this.m13*(this.m20*this.m31-this.m21*this.m30)+this.m10*(this.m21*this.m33-this.m23*this.m31)+this.m11*(this.m23*this.m30-
this.m20*this.m33),this.m23*(this.m00*this.m31-this.m01*this.m30)+this.m20*(this.m01*this.m33-this.m03*this.m31)+this.m21*(this.m03*this.m30-this.m00*this.m33),this.m33*(this.m00*this.m11-this.m01*this.m10)+this.m30*(this.m01*this.m13-this.m03*this.m11)+this.m31*(this.m03*this.m10-this.m00*this.m13),this.m03*(this.m11*this.m20-this.m10*this.m21)+this.m00*(this.m13*this.m21-this.m11*this.m23)+this.m01*(this.m10*this.m23-this.m13*this.m20),this.m10*(this.m22*this.m31-this.m21*this.m32)+this.m11*(this.m20*
this.m32-this.m22*this.m30)+this.m12*(this.m21*this.m30-this.m20*this.m31),this.m20*(this.m02*this.m31-this.m01*this.m32)+this.m21*(this.m00*this.m32-this.m02*this.m30)+this.m22*(this.m01*this.m30-this.m00*this.m31),this.m30*(this.m02*this.m11-this.m01*this.m12)+this.m31*(this.m00*this.m12-this.m02*this.m10)+this.m32*(this.m01*this.m10-this.m00*this.m11),this.m00*(this.m11*this.m22-this.m12*this.m21)+this.m01*(this.m12*this.m20-this.m10*this.m22)+this.m02*(this.m10*this.m21-this.m11*this.m20));this.scale(a);
return this});c(b,"set",function(a,d,b,c,f,g,e,l,m,x,n,p,q,j,r,s){this.m00=a;this.m01=d;this.m02=b;this.m03=c;this.m10=f;this.m11=g;this.m12=e;this.m13=l;this.m20=m;this.m21=x;this.m22=n;this.m23=p;this.m30=q;this.m31=j;this.m32=r;this.m33=s},"~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N,~N");c(b,"determinant4",function(){return(this.m00*this.m11-this.m01*this.m10)*(this.m22*this.m33-this.m23*this.m32)-(this.m00*this.m12-this.m02*this.m10)*(this.m21*this.m33-this.m23*this.m31)+(this.m00*this.m13-
this.m03*this.m10)*(this.m21*this.m32-this.m22*this.m31)+(this.m01*this.m12-this.m02*this.m11)*(this.m20*this.m33-this.m23*this.m30)-(this.m01*this.m13-this.m03*this.m11)*(this.m20*this.m32-this.m22*this.m30)+(this.m02*this.m13-this.m03*this.m12)*(this.m20*this.m31-this.m21*this.m30)});c(b,"scale",function(a){this.mul33(a);this.m03*=a;this.m13*=a;this.m23*=a;this.m30*=a;this.m31*=a;this.m32*=a;this.m33*=a},"~N");c(b,"mul",function(a){this.mul2(this,a)},"JU.M4");c(b,"mul2",function(a,d){this.set(a.m00*
d.m00+a.m01*d.m10+a.m02*d.m20+a.m03*d.m30,a.m00*d.m01+a.m01*d.m11+a.m02*d.m21+a.m03*d.m31,a.m00*d.m02+a.m01*d.m12+a.m02*d.m22+a.m03*d.m32,a.m00*d.m03+a.m01*d.m13+a.m02*d.m23+a.m03*d.m33,a.m10*d.m00+a.m11*d.m10+a.m12*d.m20+a.m13*d.m30,a.m10*d.m01+a.m11*d.m11+a.m12*d.m21+a.m13*d.m31,a.m10*d.m02+a.m11*d.m12+a.m12*d.m22+a.m13*d.m32,a.m10*d.m03+a.m11*d.m13+a.m12*d.m23+a.m13*d.m33,a.m20*d.m00+a.m21*d.m10+a.m22*d.m20+a.m23*d.m30,a.m20*d.m01+a.m21*d.m11+a.m22*d.m21+a.m23*d.m31,a.m20*d.m02+a.m21*d.m12+a.m22*
d.m22+a.m23*d.m32,a.m20*d.m03+a.m21*d.m13+a.m22*d.m23+a.m23*d.m33,a.m30*d.m00+a.m31*d.m10+a.m32*d.m20+a.m33*d.m30,a.m30*d.m01+a.m31*d.m11+a.m32*d.m21+a.m33*d.m31,a.m30*d.m02+a.m31*d.m12+a.m32*d.m22+a.m33*d.m32,a.m30*d.m03+a.m31*d.m13+a.m32*d.m23+a.m33*d.m33)},"JU.M4,JU.M4");c(b,"transform",function(a){this.transform2(a,a)},"JU.T4");c(b,"transform2",function(a,d){d.set4(this.m00*a.x+this.m01*a.y+this.m02*a.z+this.m03*a.w,this.m10*a.x+this.m11*a.y+this.m12*a.z+this.m13*a.w,this.m20*a.x+this.m21*a.y+
this.m22*a.z+this.m23*a.w,this.m30*a.x+this.m31*a.y+this.m32*a.z+this.m33*a.w)},"JU.T4,JU.T4");c(b,"rotTrans",function(a){this.rotTrans2(a,a)},"JU.T3");c(b,"rotTrans2",function(a,d){d.set(this.m00*a.x+this.m01*a.y+this.m02*a.z+this.m03,this.m10*a.x+this.m11*a.y+this.m12*a.z+this.m13,this.m20*a.x+this.m21*a.y+this.m22*a.z+this.m23);return d},"JU.T3,JU.T3");c(b,"setAsXYRotation",function(a){this.setIdentity();var d=Math.cos(a);a=Math.sin(a);this.m22=d;this.m23=-a;this.m32=a;this.m33=d;return this},
"~N");c(b,"setAsYZRotation",function(a){this.setIdentity();var d=Math.cos(a);a=Math.sin(a);this.m00=d;this.m03=-a;this.m30=a;this.m33=d;return this},"~N");c(b,"setAsXZRotation",function(a){this.setIdentity();var d=Math.cos(a);a=Math.sin(a);this.m11=d;this.m13=-a;this.m31=a;this.m33=d;return this},"~N");e(b,"equals",function(a){return!C(a,"JU.M4")?!1:this.m00==a.m00&&this.m01==a.m01&&this.m02==a.m02&&this.m03==a.m03&&this.m10==a.m10&&this.m11==a.m11&&this.m12==a.m12&&this.m13==a.m13&&this.m20==a.m20&&
this.m21==a.m21&&this.m22==a.m22&&this.m23==a.m23&&this.m30==a.m30&&this.m31==a.m31&&this.m32==a.m32&&this.m33==a.m33},"~O");e(b,"hashCode",function(){return JU.T3.floatToIntBits(this.m00)^JU.T3.floatToIntBits(this.m01)^JU.T3.floatToIntBits(this.m02)^JU.T3.floatToIntBits(this.m03)^JU.T3.floatToIntBits(this.m10)^JU.T3.floatToIntBits(this.m11)^JU.T3.floatToIntBits(this.m12)^JU.T3.floatToIntBits(this.m13)^JU.T3.floatToIntBits(this.m20)^JU.T3.floatToIntBits(this.m21)^JU.T3.floatToIntBits(this.m22)^JU.T3.floatToIntBits(this.m23)^
JU.T3.floatToIntBits(this.m30)^JU.T3.floatToIntBits(this.m31)^JU.T3.floatToIntBits(this.m32)^JU.T3.floatToIntBits(this.m33)});e(b,"toString",function(){return"[["+this.m00+"\t"+this.m01+"\t"+this.m02+"\t"+this.m03+"]\n  ["+this.m10+"\t"+this.m11+"\t"+this.m12+"\t"+this.m13+"]\n  ["+this.m20+"\t"+this.m21+"\t"+this.m22+"\t"+this.m23+"]\n  ["+this.m30+"\t"+this.m31+"\t"+this.m32+"\t"+this.m33+"]]"});c(b,"round",function(a){this.m00=this.rnd(this.m00,a);this.m01=this.rnd(this.m01,a);this.m02=this.rnd(this.m02,
a);this.m03=this.rnd(this.m03,a);this.m10=this.rnd(this.m10,a);this.m11=this.rnd(this.m11,a);this.m12=this.rnd(this.m12,a);this.m13=this.rnd(this.m13,a);this.m20=this.rnd(this.m20,a);this.m21=this.rnd(this.m21,a);this.m22=this.rnd(this.m22,a);this.m23=this.rnd(this.m23,a);this.m30=this.rnd(this.m30,a);this.m31=this.rnd(this.m31,a);this.m32=this.rnd(this.m32,a);this.m33=this.rnd(this.m33,a);return this},"~N");c(b,"rnd",function(a,d){return Math.abs(a)<d?0:a},"~N,~N")});r("JU");v(["java.io.OutputStream",
"javajs.api.GenericOutputChannel"],"JU.OC",["java.io.BufferedWriter","$.ByteArrayOutputStream","$.OutputStreamWriter","JU.Base64","$.SB"],function(){var b=p(function(){this.bw=this.fileName=this.bytePoster=null;this.isLocalFile=!1;this.byteCount=0;this.closed=this.isCanceled=!1;this.type=this.sb=this.os=null;this.$isBase64=!1;this.bytes=this.os0=null;this.bigEndian=!0;q(this,arguments)},JU,"OC",java.io.OutputStream,javajs.api.GenericOutputChannel);n(b,function(){A(this,JU.OC,[])});n(b,function(a){A(this,
JU.OC,[]);this.setParams(null,a,!1,null)},"~S");c(b,"setParams",function(a,d,b,c){this.bytePoster=a;if(this.$isBase64=";base64,".equals(d))d=null,this.os0=c,c=null;this.fileName=d;this.os=c;this.isLocalFile=null!=d&&!JU.OC.isRemote(d);b&&(!this.$isBase64&&null!=c)&&(this.bw=new java.io.BufferedWriter(new java.io.OutputStreamWriter(c)));return this},"javajs.api.BytePoster,~S,~B,java.io.OutputStream");e(b,"isBigEndian",function(){return this.bigEndian});c(b,"setBigEndian",function(a){this.bigEndian=
a},"~B");c(b,"setBytes",function(a){this.bytes=a;return this},"~A");c(b,"getFileName",function(){return this.fileName});c(b,"getName",function(){return null==this.fileName?null:this.fileName.substring(this.fileName.lastIndexOf("/")+1)});c(b,"getByteCount",function(){return this.byteCount});c(b,"setType",function(a){this.type=a},"~S");c(b,"getType",function(){return this.type});c(b,"append",function(a){try{if(null!=this.bw)this.bw.write(a);else if(null==this.os)null==this.sb&&(this.sb=new JU.SB),this.sb.append(a);
else{var d=a.getBytes();this.os.write(d,0,d.length);this.byteCount+=d.length;return this}}catch(b){if(!y(b,"java.io.IOException"))throw b;}this.byteCount+=a.length;return this},"~S");e(b,"reset",function(){this.sb=null;this.initOS()});c(b,"initOS",function(){if(null!=this.sb){var a=this.sb.toString();this.reset();this.append(a)}else{try{this.os=null,null==this.os&&(this.os=new java.io.ByteArrayOutputStream),null!=this.bw&&(this.bw.close(),this.bw=new java.io.BufferedWriter(new java.io.OutputStreamWriter(this.os)))}catch(d){if(y(d,
Exception))System.out.println(d.toString());else throw d;}this.byteCount=0}});e(b,"writeByteAsInt",function(a){null==this.os&&this.initOS();this.os.writeByteAsInt(a);this.byteCount++},"~N");e(b,"write",function(a,d,b){null==this.os&&this.initOS();0>b&&(b=a.length-d);try{this.os.write(a,d,b)}catch(c){if(!y(c,"java.io.IOException"))throw c;}this.byteCount+=b},"~A,~N,~N");e(b,"writeShort",function(a){this.isBigEndian()?(this.writeByteAsInt(a>>8),this.writeByteAsInt(a)):(this.writeByteAsInt(a),this.writeByteAsInt(a>>
8))},"~N");e(b,"writeLong",function(a){this.isBigEndian()?(this.writeInt(a>>32&4294967295),this.writeInt(a&4294967295)):(this.writeByteAsInt(a>>56),this.writeByteAsInt(a>>48),this.writeByteAsInt(a>>40),this.writeByteAsInt(a>>32),this.writeByteAsInt(a>>24),this.writeByteAsInt(a>>16),this.writeByteAsInt(a>>8),this.writeByteAsInt(a))},"~N");c(b,"cancel",function(){this.isCanceled=!0;this.closeChannel()});e(b,"closeChannel",function(){if(this.closed)return null;try{null!=this.bw?(this.bw.flush(),this.bw.close()):
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this.line+": "+x);else throw x;}return!c},"~N,~B,JU.Lst");e(b,"setACDAssignments",function(a,d,b,c,f){try{0<=b&&(this.peakIndex=F(-1,[b]));var g=0==d.indexOf("MASS"),e=" file="+JU.PT.esc(this.peakFilePath.$replace("\\","/"));a=" model="+JU.PT.esc(a+" (assigned)");this.peakYLabel=this.peakXLabel="";var l=this.getACDPeakWidth(d)/2,m=new java.util.Hashtable,x=new JU.Lst;b=null;var n,p,q=0;if(g){b=new java.util.Hashtable;for(var j=JU.PT.split(f,"M  ZZC"),r=j.length;1<=--r;){var s=JU.PT.getTokens(j[r]),
q=Math.max(q,JU.PT.parseInt(s[0]));b.put(s[1],s[0])}n=4;p=0}else 0<=d.indexOf("NMR")?(n=0,p=3):(n=0,p=2);for(var u=c.size(),r=0;r<u;r++){var v=c.get(r),w=JU.PT.parseFloat(v[n]),z=v[p],z=g?this.fixACDAtomList(z,b,q):z.$replace(";",",");if(0<=z.indexOf("select")){var A=z.indexOf("select atomno=");if(0>A)continue;z=JU.PT.split(z.substring(A+14)," ")[0]}var B=g?"m/z="+Math.round(w)+": "+v[2]+" ("+v[1]+")":2==p?""+Math.round(10*w)/10:null;this.getStringInfo(e,B,d,a,z,m,""+w,x,' atoms="%ATOMS%" xMin="'+
(w-l)+'" xMax="'+(w+l)+'">')}return this.setPeakData(x,0)}catch(C){if(y(C,Exception))return 0;throw C;}},"~S,~S,~N,JU.Lst,~S");c(b,"fixACDAtomList",function(a,d,b){a=a.trim();a=JU.PT.getTokens(a.$replace(";"," "));for(var c=new JU.BS,f=!1,g=0;g<a.length;g++){var e=a[g];(f=0<=e.indexOf("M"))&&(e="1-"+b);var l=e.indexOf("-");if(0<=l)for(var m=JU.PT.parseInt(e.substring(0,l)),e=JU.PT.parseInt(e.substring(l+1))+1;m<e;m++)c.set(f?m:JU.PT.parseInt(d.get(""+m)));else c.set(JU.PT.parseInt(d.get(e)))}d=c.toJSON();
return d.substring(1,d.length-1)},"~S,java.util.Map,~N");c(b,"getACDPeakWidth",function(a){return 0<=a.indexOf("HNMR")?0.05:0<=a.indexOf("CNMR")?1:0<=a.indexOf("MASS")?1:10},"~S");e(b,"readPeaks",function(a,d){try{0<=d&&(this.peakIndex=F(-1,[d]));var b=a?1:0,c=a?"Signals":"Peaks",f=a?"<Signal":"<PeakData";if(!this.findRecord(c))return 0;var g=" file="+JU.PT.esc(this.peakFilePath.$replace("\\","/")),e=JU.PT.getQuotedAttribute(this.line,"model"),e=this.fixModel(e,!0),e=" model="+JU.PT.esc(null==e?this.thisModelID:
e),l=JU.PT.getQuotedAttribute(this.line,"type");this.peakXLabel=JU.PT.getQuotedAttribute(this.line,"xLabel");this.peakYLabel=JU.PT.getQuotedAttribute(this.line,"yLabel");for(var m=new java.util.Hashtable,x=new JU.Lst;null!=this.readLine()&&!(this.line=this.line.trim()).startsWith("</"+c);)if(this.line.startsWith(f)){this.getRecord(f);JU.Logger.info(this.line);var n=JU.PT.getQuotedAttribute(this.line,"title");null==l&&(l=JU.PT.getQuotedAttribute(this.line,"type"));var p=JU.PT.getQuotedAttribute(this.line,
"atoms"),q=I(100*JU.PT.parseFloat(JU.PT.getQuotedAttribute(this.line,"xMin")))+"_"+I(100*JU.PT.parseFloat(JU.PT.getQuotedAttribute(this.line,"xMax"))),j=JU.PT.getQuotedAttribute(this.line,"model"),r=this.fixModel(j,!0);null==this.firstModelWithPeaks&&(this.firstModelWithPeaks=r);null!=r&&!r.equals(j)&&(this.line=JU.PT.rep(this.line,'model="'+j+'"','model="'+r+'"'),JU.Logger.error("peak model changed from "+j+" for "+this.line));var s=this.line.substring(f.length).trim();this.getStringInfo(g,n,l,null==
j?e:"",p,m,q,x,s)}return this.setPeakData(x,b)}catch(u){if(y(u,Exception))return 0;throw u;}},"~B,~N");c(b,"checkDuplicateModelID",function(){var a=this.mapDup.get(this.thisModelID);if(null==a)this.mapDup.put(this.thisModelID,Integer.$valueOf(1));else{var a=Integer.$valueOf(a.intValue()+1),d=this.thisModelID+a;JU.Logger.error("duplicate model id "+this.thisModelID+" now "+d);this.mapDup.put(this.thisModelID,a);this.thisModelID=d}});c(b,"fixModel",function(a,d){null!=a&&-2147483648!=JU.PT.parseInt(a)&&
(a="_"+a);var b=null==a||!d?null:this.mapDup.get(a);null!=b&&1<b.intValue()&&(a=this.thisModelID);return a},"~S,~B");c(b,"setPeakData",function(a,d){for(var b=0,c=a.size(),f=0;f<c;f++){var g=a.get(f),e=JU.PT.rep(g[0],"%INDEX%",""+ ++this.peakIndex[0]),l=g[1];if(null!=l){for(var g="",m=l.nextSetBit(0);0<=m;m=l.nextSetBit(m+1))g+=","+(m+d);l=l.cardinality();b+=l;e=JU.PT.rep(e,"%ATOMS%",g.substring(1));e=JU.PT.rep(e,"%S%",1==l?"":"s");e=JU.PT.rep(e,"%NATOMS%",""+l)}JU.Logger.info("adding PeakData "+
e);this.loader.addPeakData(e)}this.loader.setSpectrumPeaks(b,this.peakXLabel,this.peakYLabel);return c},"JU.Lst,~N");c(b,"getStringInfo",function(a,d,b,c,f,g,e,l,m){"HNMR".equals(b)?b="1HNMR":"CNMR".equals(b)&&(b="13CNMR");var x=null==b?"":" type="+JU.PT.esc(b);null==d&&(d="1HNMR".equals(b)?"atom%S%: %ATOMS%; integration: %NATOMS%":"");d=" title="+JU.PT.esc(d);a="<PeakData "+a+' index="%INDEX%"'+d+x+c+" "+m;null!=f&&(a=JU.PT.rep(a,'atoms="'+f+'"','atoms="%ATOMS%"'));d=g.get(e);null==d&&(d=B(-1,[a,
null==f?null:new JU.BS]),g.put(e,d),l.addLast(d));null!=f&&(g=d[1],f=f.$replace(","," "),f.equals("*")&&(f="0:1000"),g.or(JU.BS.unescape("({"+f+"})")))},"~S,~S,~S,~S,~S,java.util.Map,~S,JU.Lst,~S");c(b,"getModelData",function(a){this.baseModel=this.fixModel(this.getAttribute(this.line,"baseModel"),!0);this.lastModel=this.thisModelID;this.thisModelID=this.fixModel(this.getAttribute(this.line,"id"),!1);for(this.checkDuplicateModelID();0>this.line.indexOf(">")&&0>this.line.indexOf("type");)this.readLine();
var d=this.getAttribute(this.line,"type").toLowerCase();this.vibScale=JU.PT.parseFloat(this.getAttribute(this.line,"vibrationScale"));d.equals("xyzvib")?d="xyz":0==d.length&&(d=null);for(var b=new JU.SB;null!=this.readLine()&&!this.line.contains("</ModelData>");)b.append(this.line).appendC("\n");this.loader.processModelData(b.toString(),this.thisModelID,d,this.baseModel,this.lastModel,NaN,this.vibScale,a)},"~B");c(b,"findRecord",function(a){null==this.line&&this.readLine();null!=this.line&&0>this.line.indexOf("<"+
a)&&(this.line=this.loader.discardLinesUntilContains2("<"+a,"##"));return null!=this.line&&0<=this.line.indexOf("<"+a)},"~S");c(b,"readLine",function(){return this.line=this.loader.rd()});e(b,"setLine",function(a){this.line=a},"~S");e(b,"getFirstModelWithPeaks",function(){return this.firstModelWithPeaks})});r("J.jsv");v(["J.api.JmolJSpecView"],"J.jsv.JSV","java.util.Hashtable JU.BS $.Lst $.PT JU.Escape $.Logger JV.FileManager".split(" "),function(){var b=p(function(){this.vwr=null;q(this,arguments)},
J.jsv,"JSV",null,J.api.JmolJSpecView);e(b,"setViewer",function(a){this.vwr=a;return this},"JV.Viewer");e(b,"atomPicked",function(a){0>a||(a=this.getPeakAtomRecord(a),null!=a&&this.sendJSpecView(a+' src="JmolAtomSelect"'))},"~N");c(b,"getPeakAtomRecord",function(a){var d=this.vwr.ms.at,b=d[a].mi,c=null;switch(d[a].getElementNumber()){case 1:c="1HNMR";break;case 6:c="13CNMR";break;default:return null}d=this.vwr.ms.getInfo(b,"jdxAtomSelect_"+c);if(null==d)return null;this.vwr.ms.htPeaks=new java.util.Hashtable;
b=this.vwr.ms.htPeaks;for(c=0;c<d.size();c++){var f=d.get(c);System.out.println("Jmol JSpecView.java peak="+f);var g=b.get(f);System.out.println("Jmol JSpecView.java bspeak="+g);if(null==g){b.put(f,g=new JU.BS);var e=JU.PT.getQuotedAttribute(f,"atoms"),l=JU.PT.getQuotedAttribute(f,"select");System.out.println("Jmol JSpecView.java satoms select "+e+" "+l);var m="";null!=e?m+="visible & (atomno="+JU.PT.rep(e,","," or atomno=")+")":null!=l&&(m+="visible & ("+l+")");System.out.println("Jmol JSpecView.java script : "+
m);g.or(this.vwr.getAtomBitSet(m))}System.out.println("Jmol JSpecView bsPeak now : "+g+" "+a);if(g.get(a))return f}return null},"~N");c(b,"sendJSpecView",function(a){var d=JU.PT.getQuotedAttribute(a,"title");null!=d&&this.vwr.scriptEcho(JU.Logger.debugging?a:d);a=this.vwr.fullName+"JSpecView: "+a;JU.Logger.info("Jmol>JSV "+a);this.vwr.sm.syncSend(a,">",0)},"~S");e(b,"setModel",function(a){if(1==(this.vwr.ms.getInfoM("_startJSpecView")===Boolean.TRUE?1:this.vwr.sm.getSyncMode()))a=this.vwr.ms.getInfo(a,
"jdxModelSelect"),null!=a&&this.sendJSpecView(a+' src="Jmol"')},"~N");e(b,"getBaseModelIndex",function(a){var d=this.vwr.ms.getInfo(a,"jdxBaseModel");if(null!=d)for(var b=this.vwr.ms.mc;0<=--b;)if(d.equals(this.vwr.ms.getInfo(b,"jdxModelID")))return b;return a},"~N");e(b,"processSync",function(a,d){JU.Logger.debugging&&JU.Logger.info("J.jsv.JSpecView jsvMode="+d+" script="+a);switch(d){case 0:case 77:case 28:case 35:return a.startsWith("JSpecView:")||(a="JSpecView:"+a),a=this.vwr.fullName+a,this.vwr.sm.syncSend(a,
">",0),null}switch(d){default:return null;case 21:return null;case 14:var b=JU.PT.getQuotedAttribute(a,"file"),c=null!=b&&b.startsWith(JV.FileManager.SIMULATION_PROTOCOL),f=!c||this.vwr.isApplet?"":JU.PT.getQuotedAttribute(b.$replace("'",'"'),"id"),b=c&&!this.vwr.isApplet&&(b.startsWith(JV.FileManager.SIMULATION_PROTOCOL+"C13/MOL=")||b.startsWith(JV.FileManager.SIMULATION_PROTOCOL+"H1/MOL="))?null:JU.PT.rep(b,"#molfile",""),g=c?"molfile":JU.PT.getQuotedAttribute(a,"model"),e=JU.PT.getQuotedAttribute(a,
"baseModel"),l=JU.PT.getQuotedAttribute(a,"atoms"),m=JU.PT.getQuotedAttribute(a,"select"),x=JU.PT.getQuotedAttribute(a,"script");if(null==f||0==f.length)f=null==g?null:(null==b?"":b+"#")+g;"".equals(e)&&(f+=".baseModel");g=null==f?-3:this.vwr.getModelIndexFromId(f);if(-2==g)return null;if(-1!=g||null==b)a="";else{if(c&&!this.vwr.isApplet)return null;c&&(b+="#molfile");a=0<=g?"":"load "+JU.PT.esc(b)}null!=f&&(a+=";model "+JU.PT.esc(f));null!=l?a+=";select visible & (@"+JU.PT.rep(l,","," or @")+")":
null!=m&&(a+=";select visible & ("+m+")");null!=x&&(a+=";"+x);return a;case 7:b=JU.Escape.unescapeStringArray(a.substring(7));c=new JU.Lst;f="1HNMR";for(l=0;l<b.length;l++)0==l&&0<=b[l].indexOf(JV.FileManager.SIMULATION_PROTOCOL+"C13/")&&(f="13CNMR"),c.addLast(b[l]);this.vwr.ms.setInfo(this.vwr.am.cmi,"jdxAtomSelect_"+f,c);return null}},"~S,~N")});r("JSV.api");E(JSV.api,"AnnotationData");r("JSV.api");E(JSV.api,"AppletFrame");r("JSV.api");E(JSV.api,"JSVAppInterface",JSV.api.JSVAppletInterface);r("JSV.api");
E(JSV.api,"JSVAppletInterface");r("JSV.api");E(JSV.api,"JSVFileHelper");r("JSV.api");E(JSV.api,"JSVMainPanel",JSV.api.JSVViewPanel);r("JSV.api");E(JSV.api,"JSVPanel",JSV.api.JSVViewPanel);r("JSV.api");E(JSV.api,"JSVTree");r("JSV.api");E(JSV.api,"JSVTreeNode");r("JSV.api");E(JSV.api,"JSVTreePath");r("JSV.api");E(JSV.api,"JSVViewPanel");r("JSV.api");E(JSV.api,"JSVZipReader");r("JSV.api");E(JSV.api,"PanelListener");r("JSV.api");E(JSV.api,"ScriptInterface");r("JSV.app");v(["JSV.api.JSVAppInterface","$.PanelListener",
"$.ScriptInterface"],"JSV.app.JSVApp","JU.Lst $.PT JSV.common.Coordinate $.JSVFileManager $.JSVersion $.JSViewer $.ScriptToken JU.Logger".split(" "),function(){var b=p(function(){this.appletFrame=null;this.isNewWindow=!1;this.prevPanel=this.vwr=this.syncCallbackFunctionName=this.peakCallbackFunctionName=this.loadFileCallbackFunctionName=this.coordCallbackFunctionName=this.appletReadyCallbackFunctionName=null;q(this,arguments)},JSV.app,"JSVApp",null,[JSV.api.PanelListener,JSV.api.JSVAppInterface,JSV.api.ScriptInterface]);
n(b,function(a,d){this.appletFrame=a;this.initViewer(d);this.initParams(a.getParameter("script"))},"JSV.api.AppletFrame,~B");c(b,"initViewer",function(a){this.vwr=new JSV.common.JSViewer(this,!0,a,!0);this.appletFrame.setDropTargetListener(this.isSigned(),this.vwr);a=this.appletFrame.getDocumentBase();JSV.common.JSVFileManager.setDocumentBase(this.vwr,a)},"~B");e(b,"isPro",function(){return this.isSigned()});e(b,"isSigned",function(){return!0});c(b,"getAppletFrame",function(){return this.appletFrame});
c(b,"dispose",function(){try{this.vwr.dispose()}catch(a){if(y(a,Exception))a.printStackTrace();else throw a;}});e(b,"getPropertyAsJavaObject",function(a){return this.vwr.getPropertyAsJavaObject(a)},"~S");e(b,"getPropertyAsJSON",function(a){return JU.PT.toJSON(null,this.getPropertyAsJavaObject(a))},"~S");e(b,"getCoordinate",function(){return this.vwr.getCoordinate()});e(b,"loadInline",function(a){this.siOpenDataOrFile(a,"[inline]",null,null,-1,-1,!0,null,null);this.appletFrame.validateContent(3)},
"~S");e(b,"exportSpectrum",function(a,d){return this.vwr.$export(a,d)},"~S,~N");e(b,"setFilePath",function(a){this.runScript("load "+JU.PT.esc(a))},"~S");e(b,"setSpectrumNumber",function(a){this.runScript(JSV.common.ScriptToken.SPECTRUMNUMBER+" "+a)},"~N");e(b,"reversePlot",function(){this.toggle(JSV.common.ScriptToken.REVERSEPLOT)});e(b,"toggleGrid",function(){this.toggle(JSV.common.ScriptToken.GRIDON)});e(b,"toggleCoordinate",function(){this.toggle(JSV.common.ScriptToken.COORDINATESON)});e(b,"togglePointsOnly",
function(){this.toggle(JSV.common.ScriptToken.POINTSONLY)});e(b,"toggleIntegration",function(){this.toggle(JSV.common.ScriptToken.INTEGRATE)});c(b,"toggle",function(a){null!=this.vwr.selectedPanel&&this.runScript(a+" TOGGLE")},"JSV.common.ScriptToken");e(b,"addHighlight",function(a,d,b,c,f,g){this.runScript("HIGHLIGHT "+a+" "+d+" "+b+" "+c+" "+f+" "+g)},"~N,~N,~N,~N,~N,~N");e(b,"removeHighlight",function(a,d){this.runScript("HIGHLIGHT "+a+" "+d+" OFF")},"~N,~N");e(b,"removeAllHighlights",function(){this.runScript("HIGHLIGHT OFF")});
e(b,"syncScript",function(a){this.vwr.syncScript(a)},"~S");e(b,"writeStatus",function(a){JU.Logger.info(a)},"~S");c(b,"initParams",function(a){this.vwr.parseInitScript(a);this.newAppletPanel();this.vwr.setPopupMenu(this.vwr.allowMenu,this.vwr.parameters.getBoolean(JSV.common.ScriptToken.ENABLEZOOM));this.vwr.allowMenu&&this.vwr.closeSource(null);this.runScriptNow(a)},"~S");c(b,"newAppletPanel",function(){JU.Logger.info("newAppletPanel");this.appletFrame.createMainPanel(this.vwr)});e(b,"repaint",function(){var a=
null==this.vwr?null:this.vwr.html5Applet;null==JSV.common.JSViewer.jsmolObject?this.appletFrame.repaint():null!=a&&JSV.common.JSViewer.jsmolObject.repaint(a,!0)});c(b,"updateJS",function(){},"~N,~N");e(b,"runScriptNow",function(a){return this.vwr.runScriptNow(a)},"~S");c(b,"checkCallbacks",function(){if(!(null==this.coordCallbackFunctionName&&null==this.peakCallbackFunctionName)){var a=new JSV.common.Coordinate,d=null==this.peakCallbackFunctionName?null:new JSV.common.Coordinate;if(this.vwr.pd().getPickedCoordinates(a,
d)){var b=this.vwr.mainPanel.getCurrentPanelIndex();null==d?this.appletFrame.callToJavaScript(this.coordCallbackFunctionName,B(-1,[Double.$valueOf(a.getXVal()),Double.$valueOf(a.getYVal()),Integer.$valueOf(b+1)])):this.appletFrame.callToJavaScript(this.peakCallbackFunctionName,B(-1,[Double.$valueOf(a.getXVal()),Double.$valueOf(a.getYVal()),Double.$valueOf(d.getXVal()),Double.$valueOf(d.getYVal()),Integer.$valueOf(b+1)]))}}});c(b,"doAdvanced",function(){},"~S");e(b,"panelEvent",function(a){C(a,"JSV.common.PeakPickEvent")?
this.vwr.processPeakPickEvent(a,!1):C(a,"JSV.common.ZoomEvent")||C(a,"JSV.common.SubSpecChangeEvent")},"~O");e(b,"getSolnColour",function(){return this.vwr.getSolutionColorStr(!0)});c(b,"updateJSView",function(a){var d=this.vwr.html5Applet;d&&null!=d._viewSet&&d._updateView(null==d?null:this.vwr.selectedPanel,a)},"~S");e(b,"syncToJmol",function(a){this.updateJSView(a);null!=this.syncCallbackFunctionName&&(JU.Logger.info("JSVApp.syncToJmol JSV>Jmol "+a),this.appletFrame.callToJavaScript(this.syncCallbackFunctionName,
B(-1,[this.vwr.fullName,a])))},"~S");e(b,"setVisible",function(a){this.appletFrame.setPanelVisible(a)},"~B");e(b,"setCursor",function(a){this.vwr.apiPlatform.setCursor(a,this.appletFrame)},"~N");e(b,"runScript",function(a){this.vwr.runScript(a)},"~S");e(b,"getScriptQueue",function(){return this.vwr.scriptQueue});e(b,"siSetCurrentSource",function(a){this.vwr.currentSource=a},"JSV.source.JDXSource");e(b,"siSendPanelChange",function(){this.vwr.selectedPanel!==this.prevPanel&&(this.prevPanel=this.vwr.selectedPanel,
this.vwr.sendPanelChange())});e(b,"siNewWindow",function(a,d){this.isNewWindow=a;d?null!=this.vwr.jsvpPopupMenu&&this.vwr.jsvpPopupMenu.setSelected("Window",!1):this.appletFrame.newWindow(a)},"~B,~B");e(b,"siValidateAndRepaint",function(){var a=this.vwr.pd();null!=a&&a.setTaintedAll();this.appletFrame.validate();this.repaint()},"~B");e(b,"siSyncLoad",function(a){this.newAppletPanel();JU.Logger.info("JSVP syncLoad reading "+a);this.siOpenDataOrFile(null,null,null,a,-1,-1,!1,null,null);this.appletFrame.validateContent(3)},
"~S");e(b,"siOpenDataOrFile",function(a,d,b,c,f,g,e,l,m){switch(this.vwr.openDataOrFile(a,d,b,c,f,g,e,m)){case 0:null!=l&&this.runScript(l);break;case -1:return;default:this.siSetSelectedPanel(null);return}JU.Logger.info(this.appletFrame.getAppletInfo()+" File "+this.vwr.currentSource.getFilePath()+" Loaded Successfully")},"~O,~S,JU.Lst,~S,~N,~N,~B,~S,~S");e(b,"siProcessCommand",function(a){this.vwr.runScriptNow(a)},"~S");e(b,"siSetSelectedPanel",function(a){this.vwr.mainPanel.setSelectedPanel(this.vwr,
a,this.vwr.panelNodes);this.vwr.spectraTree.setSelectedPanel(this,a);null==a&&(a=this.appletFrame.getJSVPanel(this.vwr,null),this.vwr.mainPanel.setSelectedPanel(this.vwr,a,null));this.appletFrame.validate();null!=a&&(a.setEnabled(!0),a.setFocusable(!0))},"JSV.api.JSVPanel");e(b,"siExecSetCallback",function(a,d){switch(a){case JSV.common.ScriptToken.APPLETREADYCALLBACKFUNCTIONNAME:this.appletReadyCallbackFunctionName=d;break;case JSV.common.ScriptToken.LOADFILECALLBACKFUNCTIONNAME:this.loadFileCallbackFunctionName=
d;break;case JSV.common.ScriptToken.PEAKCALLBACKFUNCTIONNAME:this.peakCallbackFunctionName=d;break;case JSV.common.ScriptToken.SYNCCALLBACKFUNCTIONNAME:this.syncCallbackFunctionName=d;break;case JSV.common.ScriptToken.COORDCALLBACKFUNCTIONNAME:this.coordCallbackFunctionName=d}},"JSV.common.ScriptToken,~S");e(b,"siLoaded",function(a){null!=this.loadFileCallbackFunctionName&&this.appletFrame.callToJavaScript(this.loadFileCallbackFunctionName,B(-1,[this.vwr.appletName,a]));this.updateJSView(null);return null},
"~S");e(b,"siExecHidden",function(){},"~B");e(b,"siExecScriptComplete",function(a,d){d||this.vwr.showMessage(a);this.siValidateAndRepaint(!1)},"~S,~B");e(b,"siUpdateBoolean",function(){},"JSV.common.ScriptToken,~B");e(b,"siCheckCallbacks",function(){this.checkCallbacks()},"~S");e(b,"siNodeSet",function(){this.appletFrame.validateContent(2);this.siValidateAndRepaint(!1)},"JSV.common.PanelNode");e(b,"siSourceClosed",function(){},"JSV.source.JDXSource");e(b,"siGetNewJSVPanel",function(a){if(null==a)return this.vwr.initialEndIndex=
this.vwr.initialStartIndex=-1,null;var d=new JU.Lst;d.addLast(a);a=this.appletFrame.getJSVPanel(this.vwr,d);a.getPanelData().addListener(this);this.vwr.parameters.setFor(a,null,!0);return a},"JSV.common.Spectrum");e(b,"siGetNewJSVPanel2",function(a){if(null==a)return this.vwr.initialEndIndex=this.vwr.initialStartIndex=-1,this.appletFrame.getJSVPanel(this.vwr,null);a=this.appletFrame.getJSVPanel(this.vwr,a);this.vwr.initialEndIndex=this.vwr.initialStartIndex=-1;a.getPanelData().addListener(this);this.vwr.parameters.setFor(a,
null,!0);return a},"JU.Lst");e(b,"siSetPropertiesFromPreferences",function(){this.vwr.checkAutoIntegrate()},"JSV.api.JSVPanel,~B");e(b,"siSetLoaded",function(){},"~S,~S");e(b,"siSetMenuEnables",function(){},"JSV.common.PanelNode,~B");e(b,"siUpdateRecentMenus",function(){},"~S");e(b,"siExecTest",function(){this.loadInline("")},"~S");e(b,"print",function(a){return this.vwr.print(a)},"~S");e(b,"checkScript",function(a){return this.vwr.checkScript(a)},"~S");b.getAppletInfo=c(b,"getAppletInfo",function(){return"JSpecView Applet "+
JSV.common.JSVersion.VERSION+"\n\nAuthors:\nProf. Robert M. Hanson,\nD. Facey, K. Bryan, C. Walters, Prof. Robert J. Lancashire and\nvolunteer developers through sourceforge."})});r("JSV.app");v(["J.api.GenericMouseInterface"],"JSV.app.GenericMouse",["JU.Logger"],function(){var b=p(function(){this.jsvp=this.pd=null;this.modifiersWhenPressed10=this.yWhenPressed=this.xWhenPressed=0;this.disposed=this.isMouseDown=!1;q(this,arguments)},JSV.app,"GenericMouse",null,J.api.GenericMouseInterface);n(b,function(a){this.jsvp=
a;this.pd=a.getPanelData()},"JSV.api.JSVPanel");e(b,"clear",function(){});e(b,"processEvent",function(a,d,b,c,f){if(null==this.pd)return!this.disposed&&(501==a&&0!=(c&4))&&this.jsvp.showMenu(d,b),!0;507!=a&&(c=JSV.app.GenericMouse.applyLeftMouse(c));switch(a){case 507:this.wheeled(f,d,c|32);break;case 501:this.xWhenPressed=d;this.yWhenPressed=b;this.modifiersWhenPressed10=c;this.pressed(f,d,b,c,!1);break;case 506:this.dragged(f,d,b,c);break;case 504:this.entered(f,d,b);break;case 505:this.exited(f,
d,b);break;case 503:this.moved(f,d,b,c);break;case 502:this.released(f,d,b,c);d==this.xWhenPressed&&(b==this.yWhenPressed&&c==this.modifiersWhenPressed10)&&this.clicked(f,d,b,c,1);break;default:return!1}return!0},"~N,~N,~N,~N,~N");c(b,"mouseEntered",function(a){this.entered(a.getWhen(),a.getX(),a.getY())},"java.awt.event.MouseEvent");c(b,"mouseExited",function(a){this.exited(a.getWhen(),a.getX(),a.getY())},"java.awt.event.MouseEvent");c(b,"mouseMoved",function(a){this.moved(a.getWhen(),a.getX(),a.getY(),
a.getModifiers())},"java.awt.event.MouseEvent");c(b,"mousePressed",function(a){this.pressed(a.getWhen(),a.getX(),a.getY(),a.getModifiers(),a.isPopupTrigger())},"java.awt.event.MouseEvent");c(b,"mouseDragged",function(a){var d=a.getModifiers();0==(d&28)&&(d|=16);this.dragged(a.getWhen(),a.getX(),a.getY(),d)},"java.awt.event.MouseEvent");c(b,"mouseReleased",function(a){this.released(a.getWhen(),a.getX(),a.getY(),a.getModifiers())},"java.awt.event.MouseEvent");c(b,"mouseClicked",function(a){this.clicked(a.getWhen(),
a.getX(),a.getY(),a.getModifiers(),a.getClickCount())},"java.awt.event.MouseEvent");c(b,"mouseWheelMoved",function(a){a.consume();this.wheeled(a.getWhen(),a.getWheelRotation(),a.getModifiers()|32)},"java.awt.event.MouseWheelEvent");c(b,"keyTyped",function(a){if(null!=this.pd){var d=a.getKeyChar(),b=a.getModifiers();JU.Logger.info("MouseManager keyTyped: "+d+" "+(0+d.charCodeAt(0))+" "+b);this.pd.keyTyped(d.charCodeAt(0),b)&&a.consume()}},"java.awt.event.KeyEvent");c(b,"keyPressed",function(a){null!=
this.pd&&this.pd.keyPressed(a.getKeyCode(),a.getModifiers())&&a.consume()},"java.awt.event.KeyEvent");c(b,"keyReleased",function(a){null!=this.pd&&this.pd.keyReleased(a.getKeyCode())},"java.awt.event.KeyEvent");e(b,"processKeyEvent",function(a){switch(a.getID()){case 401:this.keyPressed(a);break;case 402:this.keyReleased(a);break;case 400:this.keyTyped(a)}},"~O");c(b,"entered",function(a,d,b){null!=this.pd&&this.pd.mouseEnterExit(a,d,b,!1)},"~N,~N,~N");c(b,"exited",function(a,d,b){null!=this.pd&&
this.pd.mouseEnterExit(a,d,b,!0)},"~N,~N,~N");c(b,"clicked",function(a,d,b,c){null!=this.pd&&this.pd.mouseAction(2,a,d,b,1,c)},"~N,~N,~N,~N,~N");c(b,"moved",function(a,d,b,c){null!=this.pd&&(this.isMouseDown?this.pd.mouseAction(1,a,d,b,0,JSV.app.GenericMouse.applyLeftMouse(c)):this.pd.mouseAction(0,a,d,b,0,c&-29))},"~N,~N,~N,~N");c(b,"wheeled",function(a,d,b){null!=this.pd&&this.pd.mouseAction(3,a,0,d,0,b)},"~N,~N,~N");c(b,"pressed",function(a,d,b,c){null==this.pd?this.disposed||this.jsvp.showMenu(d,
b):(this.isMouseDown=!0,this.pd.mouseAction(4,a,d,b,0,c))},"~N,~N,~N,~N,~B");c(b,"released",function(a,d,b,c){null!=this.pd&&(this.isMouseDown=!1,this.pd.mouseAction(5,a,d,b,0,c))},"~N,~N,~N,~N");c(b,"dragged",function(a,d,b,c){null!=this.pd&&(20==(c&20)&&(c=c&-5|2),this.pd.mouseAction(1,a,d,b,0,c))},"~N,~N,~N,~N");b.applyLeftMouse=c(b,"applyLeftMouse",function(a){return 0==(a&28)?a|16:a},"~N");e(b,"processTwoPointGesture",function(){},"~A");e(b,"dispose",function(){this.jsvp=this.pd=null;this.disposed=
!0})});r("JSV.appletjs");v(["javajs.api.JSInterface","JSV.api.AppletFrame","$.JSVAppletInterface"],"JSV.appletjs.JSVApplet","java.net.URL java.util.Hashtable JU.PT JSV.app.JSVApp JSV.js2d.JsMainPanel $.JsPanel JU.Logger".split(" "),function(){var b=p(function(){this.viewer=this.app=null;this.isStandalone=!1;this.htParams=this.viewerOptions=null;q(this,arguments)},JSV.appletjs,"JSVApplet",null,[JSV.api.JSVAppletInterface,JSV.api.AppletFrame,javajs.api.JSInterface]);n(b,function(a){null==a&&(a=new java.util.Hashtable);
this.viewerOptions=a;this.htParams=new java.util.Hashtable;var d;for(a=a.entrySet().iterator();a.hasNext()&&((d=a.next())||1);)this.htParams.put(d.getKey().toLowerCase(),d.getValue());this.init()},"java.util.Map");c(b,"init",function(){this.app=new JSV.app.JSVApp(this,!0);this.initViewer();null!=this.app.appletReadyCallbackFunctionName&&null!=this.viewer.fullName&&this.callToJavaScript(this.app.appletReadyCallbackFunctionName,B(-1,[this.viewer.appletName,this.viewer.fullName,Boolean.TRUE,this]))});
c(b,"initViewer",function(){this.viewer=this.app.vwr;this.setLogging();this.viewerOptions.remove("debug");var a=this.viewerOptions.get("display"),a=document.getElementById(a);this.viewer.setDisplay(a);JU.Logger.info(this.getAppletInfo())});c(b,"setLogging",function(){var a=this.getValue("logLevel",this.getBooleanValue("debug",!1)?"5":"4").charAt(0).charCodeAt(0)-48;4!=a&&System.out.println("setting logLevel="+a+' -- To change, use script "set logLevel [0-5]"');JU.Logger.setLogLevel(a)});c(b,"getParameter",
function(a){a=this.htParams.get(a.toLowerCase());return null==a?null:a.toString()},"~S");c(b,"getBooleanValue",function(a,d){var b=this.getValue(a,d?"true":"");return b.equalsIgnoreCase("true")||b.equalsIgnoreCase("on")||b.equalsIgnoreCase("yes")},"~S,~B");c(b,"getValue",function(a,d){var b=this.getParameter(a);System.out.println("getValue "+a+" = "+b);return null!=b?b:d},"~S,~S");e(b,"isPro",function(){return this.app.isPro()});e(b,"isSigned",function(){return this.app.isSigned()});e(b,"destroy",
function(){this.app.dispose();this.app=null});c(b,"getParameter",function(a,d){return this.isStandalone?System.getProperty(a,d):null!=this.getParameter(a)?this.getParameter(a):d},"~S,~S");e(b,"getAppletInfo",function(){return JSV.app.JSVApp.getAppletInfo()});e(b,"getSolnColour",function(){return this.app.getSolnColour()});e(b,"getCoordinate",function(){return this.app.getCoordinate()});e(b,"loadInline",function(a){this.app.loadInline(a)},"~S");c(b,"$export",function(a,d){return this.app.exportSpectrum(a,
d)},"~S,~N");e(b,"exportSpectrum",function(a,d){return this.app.exportSpectrum(a,d)},"~S,~N");e(b,"setFilePath",function(a){this.app.setFilePath(a)},"~S");e(b,"setSpectrumNumber",function(a){this.app.setSpectrumNumber(a)},"~N");e(b,"toggleGrid",function(){this.app.toggleGrid()});e(b,"toggleCoordinate",function(){this.app.toggleCoordinate()});e(b,"togglePointsOnly",function(){this.app.togglePointsOnly()});e(b,"toggleIntegration",function(){this.app.toggleIntegration()});e(b,"addHighlight",function(a,
d,b,c,f,g){this.app.addHighlight(a,d,b,c,f,g)},"~N,~N,~N,~N,~N,~N");e(b,"removeAllHighlights",function(){this.app.removeAllHighlights()});e(b,"removeHighlight",function(a,d){this.app.removeHighlight(a,d)},"~N,~N");e(b,"reversePlot",function(){this.app.reversePlot()});c(b,"script",function(a){this.app.initParams(a)},"~S");e(b,"runScript",function(a){this.app.runScript(a)},"~S");e(b,"syncScript",function(a){this.app.syncScript(a)},"~S");e(b,"writeStatus",function(a){this.app.writeStatus(a)},"~S");e(b,
"getPropertyAsJavaObject",function(a){return this.app.getPropertyAsJavaObject(a)},"~S");e(b,"getPropertyAsJSON",function(a){return this.app.getPropertyAsJSON(a)},"~S");e(b,"runScriptNow",function(a){return this.app.runScriptNow(a)},"~S");e(b,"print",function(a){return this.app.print(a)},"~S");e(b,"setDropTargetListener",function(){},"~B,JSV.common.JSViewer");e(b,"validateContent",function(){},"~N");e(b,"createMainPanel",function(a){a.mainPanel=new JSV.js2d.JsMainPanel},"JSV.common.JSViewer");e(b,
"newWindow",function(){},"~B");e(b,"callToJavaScript",function(a,d){var b=JU.PT.split(a,".");try{for(var c=window[b[0]],f=1;f<b.length;f++)c=c[b[f]];return c(d[0],d[1],d[2],d[3],d[4],d[5],d[6],d[7],d[8],d[9])}catch(g){System.out.println(a+" failed "+g)}},"~S,~A");e(b,"setPanelVisible",function(){},"~B");e(b,"getJSVPanel",function(a,d){return null==d?JSV.js2d.JsPanel.getEmptyPanel(a):JSV.js2d.JsPanel.getPanelMany(a,d)},"JSV.common.JSViewer,JU.Lst");e(b,"setVisible",function(){},"~B");e(b,"getDocumentBase",
function(){try{return new java.net.URL(Y("java.net.URL"),this.viewerOptions.get("documentBase"),null)}catch(a){if(y(a,"java.net.MalformedURLException"))return null;throw a;}});e(b,"repaint",function(){});e(b,"validate",function(){});e(b,"doExitJmol",function(){});e(b,"getApp",function(){return this.app});e(b,"setStatusDragDropped",function(){return!0},"~N,~N,~N,~S,~A");e(b,"cacheFileByName",function(){return 0},"~S,~B");e(b,"cachePut",function(){},"~S,~O");e(b,"getFullName",function(){return this.app.vwr.fullName});
e(b,"processMouseEvent",function(a,d,b,c,f){return this.app.vwr.processMouseEvent(a,d,b,c,f)},"~N,~N,~N,~N,~N");e(b,"setDisplay",function(a){this.app.vwr.setDisplay(a)},"~O");e(b,"startHoverWatcher",function(){},"~B");e(b,"update",function(){this.app.vwr.updateJS()});c(b,"openFile",function(a){this.app.vwr.openFile(a,!0);return null},"~S");e(b,"openFileAsyncSpecial",function(a,d){this.app.vwr.openFileAsyncSpecial(a,d)},"~S,~N");e(b,"openFileAsyncSpecialType",function(a,d){this.openFileAsyncSpecial(a,
d)},"~S,~N,~S");e(b,"processTwoPointGesture",function(a){this.app.vwr.processTwoPointGesture(a)},"~A");e(b,"setScreenDimension",function(a,d){this.app.vwr.setScreenDimension(a,d)},"~N,~N");e(b,"checkScript",function(a){a=this.app.checkScript(a);null!=a&&System.out.println(a);return a},"~S");e(b,"processKeyEvent",function(){},"~O")});r("JSV.common");v(["java.lang.Enum","JSV.common.Coordinate"],"JSV.common.Annotation",["JU.CU"],function(){var b=p(function(){this.text="";this.is2D=this.$isPixels=!1;
this.offsetY=this.offsetX=0;this.spec=null;q(this,arguments)},JSV.common,"Annotation",JSV.common.Coordinate);c(b,"setA",function(a,d,b,c,f,g,e,l){this.set(a,d);this.spec=b;this.text=c;this.$isPixels=f;this.is2D=g;this.offsetX=e;this.offsetY=l;return this},"~N,~N,JSV.common.Spectrum,~S,~B,~B,~N,~N");c(b,"setSpec",function(a){this.spec=a;return this},"JSV.common.Spectrum");c(b,"addSpecShift",function(a){this.setXVal(this.getXVal()+a)},"~N");c(b,"isPixels",function(){return this.$isPixels});e(b,"toString",
function(){return"["+this.getXVal()+", "+this.getYVal()+","+this.text+"]"});b.getColoredAnnotation=c(b,"getColoredAnnotation",function(a,d,b,c){var f,g=0,e=1,l=2,m=3,x=b.size();try{switch(x){default:return null;case 1:f=b.get(0);g=e=-1;'"'==f.charAt(0)?(m=0,l=-1):(l=0,m=-1);break;case 2:g=e=-1;f=b.get(0);'"'==f.charAt(0)?(m=0,l=1):(l=0,m=1);break;case 3:case 4:f=b.get(2),'"'==f.charAt(0)?(m=2,l=4==x?3:-1):(l=2,m=4==x?3:-1),f=b.get(2),'"'==f.charAt(0)?(m=2,l=-1):(l=2,m=-1)}if(null==c&&(0>g||0>e||0>
m||0>l))return null;var n=0>g?c.getXVal():Double.$valueOf(b.get(g)).doubleValue(),p=0>e?c.getYVal():Double.$valueOf(b.get(e)).doubleValue(),q=0>l?c.getColor():a.getColor1(JU.CU.getArgbFromString(b.get(l))),j;0>m?j=c.text:(j=b.get(m),'"'==j.charAt(0)&&(j=j.substring(1,j.length-1)));return(new JSV.common.ColoredAnnotation).setCA(n,p,d,j,q,!1,!1,0,0)}catch(r){if(y(r,Exception))return null;throw r;}},"J.api.GenericGraphics,JSV.common.Spectrum,JU.Lst,JSV.common.Annotation");b=s(JSV.common.Annotation,"AType",
Enum);j(b,"Integration",0,[]);j(b,"PeakList",1,[]);j(b,"Measurements",2,[]);j(b,"OverlayLegend",3,[]);j(b,"Views",4,[]);j(b,"NONE",5,[])});r("JSV.common");v(["JSV.common.Annotation"],"JSV.common.ColoredAnnotation",null,function(){var b=p(function(){this.color=null;q(this,arguments)},JSV.common,"ColoredAnnotation",JSV.common.Annotation);n(b,function(){A(this,JSV.common.ColoredAnnotation,[])});c(b,"getColor",function(){return this.color});c(b,"setCA",function(a,d,b,c,f,g,e,l,m){this.setA(a,d,b,c,g,
e,l,m);this.color=f;return this},"~N,~N,JSV.common.Spectrum,~S,javajs.api.GenericColor,~B,~B,~N,~N")});r("JSV.common");v(["JSV.common.Parameters"],"JSV.common.ColorParameters",["java.util.Hashtable","$.StringTokenizer","JU.CU","$.Lst","JSV.common.ScriptToken"],function(){var b=p(function(){this.plotColors=this.elementColors=this.displayFontName=this.titleFontName=null;this.isDefault=!1;q(this,arguments)},JSV.common,"ColorParameters",JSV.common.Parameters);n(b,function(){A(this,JSV.common.ColorParameters,
[]);JSV.common.ColorParameters.BLACK=this.getColor3(0,0,0);JSV.common.ColorParameters.RED=this.getColor3(255,0,0);JSV.common.ColorParameters.LIGHT_GRAY=this.getColor3(200,200,200);JSV.common.ColorParameters.DARK_GRAY=this.getColor3(80,80,80);JSV.common.ColorParameters.BLUE=this.getColor3(0,0,255);JSV.common.ColorParameters.WHITE=this.getColor3(255,255,255);this.elementColors=new java.util.Hashtable;this.setColor(JSV.common.ScriptToken.TITLECOLOR,JSV.common.ColorParameters.BLACK);this.setColor(JSV.common.ScriptToken.UNITSCOLOR,
JSV.common.ColorParameters.RED);this.setColor(JSV.common.ScriptToken.SCALECOLOR,JSV.common.ColorParameters.BLACK);this.setColor(JSV.common.ScriptToken.COORDINATESCOLOR,JSV.common.ColorParameters.RED);this.setColor(JSV.common.ScriptToken.GRIDCOLOR,JSV.common.ColorParameters.LIGHT_GRAY);this.setColor(JSV.common.ScriptToken.PLOTCOLOR,JSV.common.ColorParameters.BLUE);this.setColor(JSV.common.ScriptToken.PLOTAREACOLOR,JSV.common.ColorParameters.WHITE);this.setColor(JSV.common.ScriptToken.BACKGROUNDCOLOR,
this.getColor3(192,192,192));this.setColor(JSV.common.ScriptToken.INTEGRALPLOTCOLOR,JSV.common.ColorParameters.RED);this.setColor(JSV.common.ScriptToken.PEAKTABCOLOR,JSV.common.ColorParameters.RED);this.setColor(JSV.common.ScriptToken.PEAKOVERCOLOR,JSV.common.ColorParameters.RED);this.setColor(JSV.common.ScriptToken.HIGHLIGHTCOLOR,JSV.common.ColorParameters.DARK_GRAY);for(var a=0;8>a;a++)JSV.common.ColorParameters.defaultPlotColors[a]=this.getColorFromString(JSV.common.ColorParameters.defaultPlotColorNames[a]);
this.plotColors=Array(8);System.arraycopy(JSV.common.ColorParameters.defaultPlotColors,0,this.plotColors,0,8)});c(b,"setFor",function(a,d,b){null==d&&(d=this);b&&a.getPanelData().setBooleans(d,null);a=a.getPanelData();null!=a.getCurrentPlotColor(1)&&a.setPlotColors(this.plotColors);a.setColorOrFont(d,null)},"JSV.api.JSVPanel,JSV.common.ColorParameters,~B");c(b,"set",function(a,d,b){var c=null;switch(d){default:this.setP(a,d,b);return;case JSV.common.ScriptToken.PLOTCOLORS:null==a?this.getPlotColors(b):
a.setPlotColors(this.getPlotColors(b));return;case JSV.common.ScriptToken.BACKGROUNDCOLOR:case JSV.common.ScriptToken.COORDINATESCOLOR:case JSV.common.ScriptToken.GRIDCOLOR:case JSV.common.ScriptToken.HIGHLIGHTCOLOR:case JSV.common.ScriptToken.INTEGRALPLOTCOLOR:case JSV.common.ScriptToken.PEAKOVERCOLOR:case JSV.common.ScriptToken.PEAKTABCOLOR:case JSV.common.ScriptToken.PLOTAREACOLOR:case JSV.common.ScriptToken.PLOTCOLOR:case JSV.common.ScriptToken.SCALECOLOR:case JSV.common.ScriptToken.TITLECOLOR:case JSV.common.ScriptToken.UNITSCOLOR:c=
this.setColorFromString(d,b);break;case JSV.common.ScriptToken.TITLEFONTNAME:case JSV.common.ScriptToken.DISPLAYFONTNAME:c=this.getFontName(d,b)}null!=a&&null!=c&&a.setColorOrFont(this,d)},"JSV.common.PanelData,JSV.common.ScriptToken,~S");c(b,"getElementColor",function(a){return this.elementColors.get(a)},"JSV.common.ScriptToken");c(b,"setColor",function(a,d){null!=d&&this.elementColors.put(a,d);return d},"JSV.common.ScriptToken,javajs.api.GenericColor");c(b,"copy",function(){return this.copy(this.name)});
c(b,"setElementColors",function(a){this.displayFontName=a.displayFontName;var d;for(a=a.elementColors.entrySet().iterator();a.hasNext()&&((d=a.next())||1);)this.setColor(d.getKey(),d.getValue());return this},"JSV.common.ColorParameters");c(b,"getColorFromString",function(a){return this.getColor1(JU.CU.getArgbFromString(a))},"~S");c(b,"getPlotColors",function(a){if(null==a)return this.plotColors[0]=this.getElementColor(JSV.common.ScriptToken.PLOTCOLOR),this.plotColors;a=new java.util.StringTokenizer(a,
",;.- ");var d=new JU.Lst;try{for(;a.hasMoreTokens();)d.addLast(this.getColorFromString(a.nextToken()))}catch(b){if(y(b,Exception))return null;throw b;}return d.toArray(Array(d.size()))},"~S");c(b,"setColorFromString",function(a,d){return this.setColor(a,this.getColorFromString(d))},"JSV.common.ScriptToken,~S");c(b,"getFontName",function(a,d){var b=this.isValidFontName(d);switch(a){case JSV.common.ScriptToken.TITLEFONTNAME:return b?this.titleFontName=d:this.titleFontName;case JSV.common.ScriptToken.DISPLAYFONTNAME:return b?
this.displayFontName=d:this.displayFontName}return null},"JSV.common.ScriptToken,~S");b.BLACK=null;b.RED=null;b.LIGHT_GRAY=null;b.DARK_GRAY=null;b.BLUE=null;b.WHITE=null;b.defaultPlotColors=Array(8);b.defaultPlotColorNames=B(-1,"black darkGreen darkred orange magenta cyan maroon darkGray".split(" "))});r("JSV.common");u=s(JSV.common,"CoordComparator",null,java.util.Comparator);e(u,"compare",function(b,a){return b.getXVal()>a.getXVal()?1:b.getXVal()<a.getXVal()?-1:0},"JSV.common.Coordinate,JSV.common.Coordinate");
r("JSV.common");v(["JSV.common.CoordComparator"],"JSV.common.Coordinate",["java.util.Arrays","$.StringTokenizer","JU.Lst"],function(){var b=p(function(){this.yVal=this.xVal=0;q(this,arguments)},JSV.common,"Coordinate",null);c(b,"set",function(a,d){this.xVal=a;this.yVal=d;return this},"~N,~N");c(b,"getXVal",function(){return this.xVal});c(b,"getYVal",function(){return this.yVal});c(b,"setXVal",function(a){this.xVal=a},"~N");c(b,"setYVal",function(a){this.yVal=a},"~N");c(b,"copy",function(){return(new JSV.common.Coordinate).set(this.xVal,
this.yVal)});c(b,"equals",function(a){return a.xVal==this.xVal&&a.yVal==this.yVal},"JSV.common.Coordinate");e(b,"toString",function(){return"["+this.xVal+", "+this.yVal+"]"});b.isYInRange=c(b,"isYInRange",function(a,d,b){return JSV.common.Coordinate.getMinY(a,0,a.length-1)>=d&&JSV.common.Coordinate.getMaxY(a,0,a.length-1)>=b},"~A,~N,~N");b.normalise=c(b,"normalise",function(a,d,b){var c=Array(a.length),f=JSV.common.Coordinate.getMinY(a,0,a.length-1);b=(JSV.common.Coordinate.getMaxY(a,0,a.length-1)-
f)/(b-d);for(var g=0;g<a.length;g++)c[g]=(new JSV.common.Coordinate).set(a[g].getXVal(),(a[g].getYVal()-f)/b-d);return c},"~A,~N,~N");b.reverse=c(b,"reverse",function(a){for(var d=a.length,b=0;b<d;b++){var c=a[b];a[b]=a[--d];a[d]=c}return a},"~A");b.parseDSV=c(b,"parseDSV",function(a,d,b){var c,f=c=0,g=new JU.Lst;0<=a.indexOf("(")&&(a=a.$replace("("," ").$replace(")"," ").$replace(","," "));for(a=new java.util.StringTokenizer(a," \t\n\r\f,;");a.hasMoreTokens();)c=a.nextToken().trim(),f=a.nextToken().trim(),
c=Double.parseDouble(c),f=Double.parseDouble(f),c=(new JSV.common.Coordinate).set(c*d,f*b),g.addLast(c);d=Array(g.size());return g.toArray(d)},"~S,~N,~N");b.deltaX=c(b,"deltaX",function(a,d,b){return(a-d)/(b-1)},"~N,~N,~N");b.removeScale=c(b,"removeScale",function(a,d,b){JSV.common.Coordinate.applyScale(a,1/d,1/b)},"~A,~N,~N");b.applyScale=c(b,"applyScale",function(a,d,b){if(1!=d||1!=b)for(var c=0;c<a.length;c++)a[c].setXVal(a[c].getXVal()*d),a[c].setYVal(a[c].getYVal()*b)},"~A,~N,~N");b.getMinX=
c(b,"getMinX",function(a,d,b){for(var c=1.7976931348623157E308;d<=b;d++){var f=a[d].getXVal();f<c&&(c=f)}return c},"~A,~N,~N");b.getMinX=c(b,"getMinX",function(a,d){for(var b=1.7976931348623157E308,c=0;c<a.size();c++){var f=a.get(c).getXYCoords(),f=JSV.common.Coordinate.getMinX(f,d.getStartingPointIndex(c),d.getEndingPointIndex(c));f<b&&(b=f)}return b},"JU.Lst,JSV.common.ViewData");b.getMaxX=c(b,"getMaxX",function(a,d,b){for(var c=-1.7976931348623157E308;d<=b;d++){var f=a[d].getXVal();f>c&&(c=f)}return c},
"~A,~N,~N");b.getMaxX=c(b,"getMaxX",function(a,d){for(var b=-1.7976931348623157E308,c=0;c<a.size();c++){var f=a.get(c).getXYCoords(),f=JSV.common.Coordinate.getMaxX(f,d.getStartingPointIndex(c),d.getEndingPointIndex(c));f>b&&(b=f)}return b},"JU.Lst,JSV.common.ViewData");b.getMinY=c(b,"getMinY",function(a,d,b){for(var c=1.7976931348623157E308;d<=b;d++){var f=a[d].getYVal();f<c&&(c=f)}return c},"~A,~N,~N");b.getMinYUser=c(b,"getMinYUser",function(a,d){for(var b=1.7976931348623157E308,c=0;c<a.size();c++){var f=
a.get(c).getUserYFactor(),g=a.get(c).getYRef(),e=a.get(c).getXYCoords(),f=(JSV.common.Coordinate.getMinY(e,d.getStartingPointIndex(c),d.getEndingPointIndex(c))-g)*f+g;f<b&&(b=f)}return b},"JU.Lst,JSV.common.ViewData");b.getMaxY=c(b,"getMaxY",function(a,d,b){for(var c=-1.7976931348623157E308;d<=b;d++){var f=a[d].getYVal();f>c&&(c=f)}return c},"~A,~N,~N");b.getMaxYUser=c(b,"getMaxYUser",function(a,d){for(var b=-1.7976931348623157E308,c=0;c<a.size();c++){var f=a.get(c).getUserYFactor(),g=a.get(c).getYRef(),
e=a.get(c).getXYCoords(),f=(JSV.common.Coordinate.getMaxY(e,d.getStartingPointIndex(c),d.getEndingPointIndex(c))-g)*f+g;f>b&&(b=f)}return b},"JU.Lst,JSV.common.ViewData");b.getYValueAt=c(b,"getYValueAt",function(a,d){var b=JSV.common.Coordinate.getNearestIndexForX(a,d);if(0==b||b==a.length)return NaN;var c=a[b].getXVal(),f=a[b-1].getXVal(),g=a[b].getYVal(),b=a[b-1].getYVal();return c==f?g:b+(g-b)/(c-f)*(d-f)},"~A,~N");b.intoRange=c(b,"intoRange",function(a,d,b){return Math.max(Math.min(a,b),d)},"~N,~N,~N");
b.getNearestIndexForX=c(b,"getNearestIndexForX",function(a,d){var b=(new JSV.common.Coordinate).set(d,0),b=java.util.Arrays.binarySearch(a,b,JSV.common.Coordinate.c);0>b&&(b=-1-b);return 0>b?0:b>a.length-1?a.length-1:b},"~A,~N");b.findXForPeakNearest=c(b,"findXForPeakNearest",function(a,d,b){d=JSV.common.Coordinate.getNearestIndexForX(a,d);for(b=b?-1:1;d<a.length-1&&0<b*(a[d+1].yVal-a[d].yVal);)d++;for(;1<=d&&0<b*(a[d-1].yVal-a[d].yVal);)d--;return 0==d||d==a.length-1?a[d].xVal:JSV.common.Coordinate.parabolicInterpolation(a,
d)},"~A,~N,~B");b.parabolicInterpolation=c(b,"parabolicInterpolation",function(a,d){var b=a[d-1].yVal,c=a[d+1].yVal;return a[d].xVal+(b-c)/2/(b-2*a[d].yVal+c)*(a[d+1].xVal-a[d].xVal)},"~A,~N");b.getPickedCoordinates=c(b,"getPickedCoordinates",function(a,d,b,c){if(null==d)return!1;var f=d.getXVal();b.setXVal(f);b.setYVal(d.getYVal());if(null==c)return!0;d=JSV.common.Coordinate.getNearestIndexForX(a,f);c.setXVal(a[d].getXVal());c.setYVal(a[d].getYVal());return!0},"~A,JSV.common.Coordinate,JSV.common.Coordinate,JSV.common.Coordinate");
b.shiftX=c(b,"shiftX",function(a,d){for(var b=a.length;0<=--b;)a[b].xVal+=d},"~A,~N");b.getNearestXWithYAbove=c(b,"getNearestXWithYAbove",function(a,d,b,c,f){d=JSV.common.Coordinate.getNearestIndexForX(a,d);var g=c?-1:1;if(f)for(;d<a.length&&0>g*(a[d].yVal-b);)d++;else for(;0<=d&&0>g*(a[d].yVal-b);)d--;return-1==d||d==a.length?NaN:JSV.common.Coordinate.findXForPeakNearest(a,a[d].getXVal(),c)},"~A,~N,~N,~B,~B");b.c=new JSV.common.CoordComparator});r("JSV.common");v(["java.lang.Enum"],"JSV.common.ExportType",
null,function(){var b=s(JSV.common,"ExportType",Enum);b.getType=c(b,"getType",function(a){a=a.toUpperCase();if(a.equalsIgnoreCase("Original..."))return JSV.common.ExportType.SOURCE;if(a.startsWith("XML"))return JSV.common.ExportType.AML;for(var d,b=0,c=JSV.common.ExportType.values();b<c.length&&((d=c[b])||1);b++)if(d.name().equals(a))return d;return JSV.common.ExportType.UNK},"~S");b.isExportMode=c(b,"isExportMode",function(a){return JSV.common.ExportType.getType(a)!==JSV.common.ExportType.UNK},"~S");
j(b,"UNK",0,[]);j(b,"SOURCE",1,[]);j(b,"DIF",2,[]);j(b,"FIX",3,[]);j(b,"SQZ",4,[]);j(b,"PAC",5,[]);j(b,"XY",6,[]);j(b,"DIFDUP",7,[]);j(b,"PNG",8,[]);j(b,"JPG",9,[]);j(b,"SVG",10,[]);j(b,"SVGI",11,[]);j(b,"CML",12,[]);j(b,"AML",13,[]);j(b,"PDF",14,[])});r("JSV.common");v(["JSV.common.XYScaleConverter","java.util.Hashtable","JU.BS","$.Lst","JSV.common.Coordinate"],"JSV.common.GraphSet","JU.DF $.PT JSV.common.Annotation $.ColorParameters $.ColoredAnnotation $.ImageView $.IntegralData $.Measurement $.MeasurementData $.PanelData $.Parameters $.PeakData $.PeakPickEvent $.PlotWidget $.ScaleData $.ScriptToken $.Spectrum $.ViewData JU.Logger".split(" "),
function(){var b=p(function(){this.gs2dLinkedY=this.gs2dLinkedX=null;this.cur1D2Locked=!1;this.spectra=this.highlights=null;this.allowStacking=this.isSplittable=!0;this.widgets=this.graphsTemp=this.pendingIntegral=this.pendingMeasurement=this.lastAnnotation=this.selectedSpectrumIntegrals=this.selectedSpectrumMeasurements=this.annotations=null;this.haveSingleYScale=this.isLinked=!1;this.iSpectrumMovedTo=-1;this.iSpectrumClicked=0;this.iSpectrumSelected=-1;this.stackSelected=!1;this.viewData=this.bsSelected=
null;this.reversePlot=!1;this.nSplit=1;this.yStackOffsetPercent=0;this.showAllStacked=!0;this.pd=this.imageView=this.viewList=null;this.sticky2Dcursor=!1;this.nSpectra=0;this.fracY=this.fracX=1;this.fY0=this.fX0=0;this.cur2Dy=this.cur1D2x2=this.cur1D2x1=this.cur2Dx1=this.cur2Dx0=this.pin2Dy01=this.pin2Dx01=this.pin2Dy1=this.pin2Dy0=this.pin2Dx1=this.pin2Dx0=this.pin1Dy01=this.pin1Dx01=this.pin1Dy1=this.pin1Dy0=this.pin1Dx1=this.pin1Dx0=this.zoomBox2D=this.zoomBox1D=null;this.yHArrows=this.xHArrows=
this.xVArrows=this.xPixels0=this.xPixel10=this.yPixel000=this.yPixel11=this.xPixel11=this.yPixel00=this.xPixel00=this.yPixels=this.xPixels=this.yPixel1=this.xPixel1=this.yPixel0=this.xPixel0=0;this.allowStackedYScale=!0;this.drawXAxisLeftToRight=!1;this.xAxisLeftToRight=!0;this.iPreviousSpectrumClicked=-1;this.zoomEnabled=this.$haveSelectedSpectrum=!1;this.currentZoomIndex=0;this.lastClickX=NaN;this.lastPixelX=2147483647;this.bottom=this.left=this.top=this.right=this.width=this.height=0;this.coordTemp=
this.piMouseOver=null;this.FONT_PLAIN=0;this.FONT_BOLD=1;this.FONT_ITALIC=2;this.is2DSpectrum=!1;this.selectedIntegral=this.selectedMeasurement=null;this.lastXMax=NaN;this.lastSpecClicked=-1;this.inPlotMove=!1;this.xPixelMovedTo2=this.xPixelMovedTo=-1;this.xValueMovedTo=this.yValueMovedTo=0;this.haveLeftRightArrows=!1;this.yPixelPlot1=this.yPixelPlot0=this.xPixelPlot0=this.xPixelPlot1=0;this.nextClickForSetPeak=null;this.splitterY=this.splitterX=this.closerY=this.closerX=0;this.isPrintingOrSaving=
!1;this.mapX=null;H("JSV.common.GraphSet.Highlight")||JSV.common.GraphSet.$GraphSet$Highlight$();this.widgetsAreSet=!0;this.nextClickMode=this.lastIntDragX=0;this.gMain=this.g2d=this.plotColors=this.image2D=this.jsvp=this.aIntegrationRatios=this.dialogs=null;this.COLOR_GREY=-3;this.COLOR_BLACK=-2;this.COLOR_INTEGRAL=-1;q(this,arguments)},JSV.common,"GraphSet",null,JSV.common.XYScaleConverter);K(b,function(){this.highlights=new JU.Lst;this.spectra=new JU.Lst;this.graphsTemp=new JU.Lst;this.bsSelected=
new JU.BS;this.coordTemp=new JSV.common.Coordinate;this.mapX=new java.util.Hashtable});n(b,function(a){this.pd=a;this.jsvp=a.jsvp;this.g2d=a.g2d},"JSV.common.PanelData");c(b,"setSpectrumMovedTo",function(a){return this.iSpectrumMovedTo=a},"~N");c(b,"setSpectrumClicked",function(a){this.stackSelected=this.showAllStacked;if(0>a||this.iSpectrumClicked!=a)this.lastClickX=NaN,this.lastPixelX=2147483647;this.iSpectrumClicked=this.setSpectrumSelected(this.setSpectrumMovedTo(a))},"~N");c(b,"setSpectrumSelected",
function(a){var d=a!=this.iSpectrumSelected;this.iSpectrumSelected=a;d&&this.getCurrentView();return this.iSpectrumSelected},"~N");c(b,"closeDialogsExcept",function(a){if(null!=this.dialogs)for(var d,b=this.dialogs.entrySet().iterator();b.hasNext()&&((d=b.next())||1);){var c=d.getValue();JSV.common.GraphSet.isDialog(c)&&(a===JSV.common.Annotation.AType.NONE||c.getAType()!==a)&&c.setVisible(!1)}},"JSV.common.Annotation.AType");c(b,"dispose",function(){this.widgets=this.graphsTemp=this.imageView=this.pendingMeasurement=
this.lastAnnotation=this.annotations=this.viewList=this.viewData=this.spectra=null;this.disposeImage();if(null!=this.dialogs)for(var a,d=this.dialogs.entrySet().iterator();d.hasNext()&&((a=d.next())||1);){var b=a.getValue();JSV.common.GraphSet.isDialog(b)&&b.dispose()}this.dialogs=null});c(b,"isDrawNoSpectra",function(){return-2147483648==this.iSpectrumSelected});c(b,"getFixedSelectedSpectrumIndex",function(){return Math.max(this.iSpectrumSelected,0)});c(b,"getSpectrum",function(){return this.getSpectrumAt(this.getFixedSelectedSpectrumIndex()).getCurrentSubSpectrum()});
c(b,"getSpectrumAt",function(a){return this.spectra.get(a)},"~N");c(b,"getSpectrumIndex",function(a){for(var d=this.spectra.size();0<=--d;)if(this.spectra.get(d)===a)return d;return-1},"JSV.common.Spectrum");c(b,"addSpec",function(a){this.spectra.addLast(a);this.nSpectra++},"JSV.common.Spectrum");c(b,"splitStack",function(a){a&&this.isSplittable?(this.nSplit=this.nSpectra,this.showAllStacked=!1,this.setSpectrumClicked(this.iSpectrumSelected),this.pd.currentSplitPoint=this.iSpectrumSelected):(this.nSplit=
1,this.showAllStacked=this.allowStacking&&!a,this.setSpectrumClicked(this.iSpectrumSelected));this.stackSelected=!1;JSV.common.GraphSet.setFractionalPositions(this.pd,this.pd.graphSets,JSV.common.PanelData.LinkMode.NONE);this.pd.setTaintedAll()},"~B");c(b,"setPositionForFrame",function(a){0>a&&(a=0);var d=this.height-50;this.xPixel00=w(this.width*this.fX0);this.xPixel11=w(this.xPixel00+this.width*this.fracX-1);this.xHArrows=this.xPixel00+25;this.xVArrows=this.xPixel11-w(this.right/2);this.xPixel0=
this.xPixel00+w(this.left*(1-this.fX0));this.xPixel10=this.xPixel1=this.xPixel11-this.right;this.xPixels0=this.xPixels=this.xPixel1-this.xPixel0+1;this.yPixel000=(0==this.fY0?25:0)+w(this.height*this.fY0);this.yPixel00=this.yPixel000+w(d*this.fracY*a);this.yPixel11=this.yPixel00+w(d*this.fracY)-1;this.yHArrows=this.yPixel11-12;this.yPixel0=this.yPixel00+w(this.top/2);this.yPixel1=this.yPixel11-w(this.bottom/2);this.yPixels=this.yPixel1-this.yPixel0+1;null!=this.imageView&&this.is2DSpectrum&&(this.setImageWindow(),
this.pd.display1D?(this.xPixels=w(Math.floor(0.8*(this.pd.display1D?1*(this.xPixels0-this.imageView.xPixels)/this.xPixels0:1)*this.xPixels0)),this.xPixel1=this.xPixel0+this.xPixels-1):(this.xPixels=0,this.xPixel1=this.imageView.xPixel0-30))},"~N");c(b,"hasPoint",function(a,d){return a>=this.xPixel00&&a<=this.xPixel11&&d>=this.yPixel000&&d<=this.yPixel11*this.nSplit},"~N,~N");c(b,"isInPlotRegion",function(a,d){return a>=this.xPixel0&&a<=this.xPixel1&&d>=this.yPixel0&&d<=this.yPixel1},"~N,~N");c(b,
"getSplitPoint",function(a){return this.yPixel1==this.yPixel00?0:Math.max(0,Math.min(w((a-this.yPixel000)/(this.yPixel11-this.yPixel00)),this.nSplit-1))},"~N");c(b,"isSplitWidget",function(a,d){return this.isFrameBox(a,d,this.splitterX,this.splitterY)},"~N,~N");c(b,"isCloserWidget",function(a,d){return this.isFrameBox(a,d,this.closerX,this.closerY)},"~N,~N");c(b,"initGraphSet",function(a,d){null==JSV.common.GraphSet.veryLightGrey&&(JSV.common.GraphSet.veryLightGrey=this.g2d.getColor3(200,200,200));
this.setPlotColors(JSV.common.ColorParameters.defaultPlotColors);this.xAxisLeftToRight=this.getSpectrumAt(0).shouldDisplayXAxisIncreasing();this.setDrawXAxis();var b=F(this.nSpectra,0),c=F(this.nSpectra,0);this.bsSelected.setBits(0,this.nSpectra);this.allowStackedYScale=!0;0>=d&&(d=2147483647);this.isSplittable=1<this.nSpectra;this.showAllStacked=(this.allowStacking=this.spectra.get(0).isStackable())&&1<this.nSpectra;for(var f=0;f<this.nSpectra;f++){var g=this.spectra.get(f).getXYCoords().length-
1;b[f]=JSV.common.Coordinate.intoRange(a,0,g);c[f]=JSV.common.Coordinate.intoRange(d,0,g);this.allowStackedYScale=(new Boolean(this.allowStackedYScale&(this.spectra.get(f).getYUnits().equals(this.spectra.get(0).getYUnits())&&this.spectra.get(f).getUserYFactor()==this.spectra.get(0).getUserYFactor()))).valueOf()}this.getView(0,0,0,0,b,c,null,null);this.viewList=new JU.Lst;this.viewList.addLast(this.viewData)},"~N,~N");c(b,"getView",function(a,d,b,c,f,g,e,l){var m=0==this.graphsTemp.size()?this.spectra:
this.graphsTemp,x=this.getSpectrumAt(0).getSubSpectra(),n=null==x||2==x.size()&&x.get(1).isImaginary(),p=!this.getSpectrumAt(0).is1D();n&&b==c?m=this.spectra:b==c&&(this.viewData=new JSV.common.ViewData(x,b,c,this.getSpectrum().isContinuous()),m=null);null!=m&&(this.viewData=new JSV.common.ViewData(m,b,c,f,g,this.getSpectrumAt(0).isContinuous(),p),a!=d&&this.getScale().setXRange(a,d));null!=e&&(JSV.common.ScaleData.copyScaleFactors(e,this.viewData.getScaleData()),null!=l&&JSV.common.ScaleData.copyYScales(l,
this.viewData.getScaleData()),this.getCurrentView())},"~N,~N,~N,~N,~A,~A,~A,~A");c(b,"isNearby",function(a,d,b,c){var f=a.getXVal(),g=b.toPixelX(f);a=this.toPixelY(a.getYVal());f=d.getXVal();b=b.toPixelX(f);d=this.toPixelY(d.getYVal());return Math.abs(g-b)+Math.abs(a-d)<c},"JSV.common.Coordinate,JSV.common.Coordinate,JSV.common.XYScaleConverter,~N");c(b,"setReversePlot",function(a){(this.reversePlot=a)&&this.closeDialogsExcept(JSV.common.Annotation.AType.NONE);this.setDrawXAxis()},"~B");c(b,"setDrawXAxis",
function(){this.drawXAxisLeftToRight=(new Boolean(this.xAxisLeftToRight^this.reversePlot)).valueOf();for(var a=0;a<this.spectra.size();a++)this.spectra.get(a).setExportXAxisDirection(this.drawXAxisLeftToRight)});c(b,"isInTopBar",function(a,d){return a==this.fixX(a)&&d>this.pin1Dx0.yPixel0-2&&d<this.pin1Dx0.yPixel1},"~N,~N");c(b,"isInTopBar2D",function(a,d){return null!=this.imageView&&a==this.imageView.fixX(a)&&d>this.pin2Dx0.yPixel0-2&&d<this.pin2Dx0.yPixel1},"~N,~N");c(b,"isInRightBar",function(a,
d){return d==this.fixY(d)&&a>this.pin1Dy0.xPixel1&&a<this.pin1Dy0.xPixel0+2},"~N,~N");c(b,"isInRightBar2D",function(a,d){return null!=this.imageView&&d==this.fixY(d)&&a>this.pin2Dy0.xPixel1&&a<this.pin2Dy0.xPixel0+2},"~N,~N");c(b,"toX0",function(a){return this.viewList.get(0).getScale().toX0(this.fixX(a),this.xPixel0,this.xPixel1,this.drawXAxisLeftToRight)},"~N");c(b,"toY0",function(a){return this.viewList.get(0).getScale().toY0(this.fixY(a),this.yPixel0,this.yPixel1)},"~N");e(b,"toX",function(a){return null!=
this.imageView&&this.imageView.isXWithinRange(a)?this.imageView.toX(a):this.getScale().toX(this.fixX(a),this.xPixel1,this.drawXAxisLeftToRight)},"~N");e(b,"toY",function(a){return this.getScale().toY(a,this.yPixel0)},"~N");c(b,"toPixelX",function(a){return this.getScale().toPixelX(a,this.xPixel0,this.xPixel1,this.drawXAxisLeftToRight)},"~N");c(b,"toPixelY",function(a){return this.getScale().toPixelY(a,this.yPixel1)},"~N");c(b,"toPixelX0",function(a){return this.viewList.get(0).getScale().toPixelX0(a,
this.xPixel0,this.xPixel1,this.drawXAxisLeftToRight)},"~N");c(b,"toPixelY0",function(a){return this.fixY(this.viewList.get(0).getScale().toPixelY0(a,this.yPixel0,this.yPixel1))},"~N");c(b,"fixX",function(a){return JSV.common.Coordinate.intoRange(a,this.xPixel0,this.xPixel1)},"~N");c(b,"fixY",function(a){return JSV.common.Coordinate.intoRange(a,this.yPixel0,this.yPixel1)},"~N");c(b,"getXPixel0",function(){return this.xPixel0});c(b,"getXPixels",function(){return this.xPixels});e(b,"getYPixels",function(){return this.yPixels});
c(b,"getScale",function(){return this.viewData.getScale()});c(b,"toPixelYint",function(a){return this.yPixel1-w(Double.isNaN(a)?-2147483648:this.yPixels*a)},"~N");c(b,"findAnnotation2D",function(a){for(var d=this.annotations.size();0<=--d;){var b=this.annotations.get(d);if(this.isNearby(b,a,this.imageView,10))return b}return null},"JSV.common.Coordinate");c(b,"addAnnotation",function(a,d){null==this.annotations&&(this.annotations=new JU.Lst);for(var b=!1,c=this.annotations.size();0<=--c;)if(a.is2D?
this.isNearby(this.annotations.get(c),a,this.imageView,10):a.equals(this.annotations.get(c)))b=!0,this.annotations.removeItemAt(c);0<a.text.length&&(!b||!d)&&this.annotations.addLast(a)},"JSV.common.Annotation,~B");c(b,"setImageWindow",function(){this.imageView.setPixelWidthHeight(w((this.pd.display1D?0.6:1)*this.xPixels0),this.yPixels);this.imageView.setXY0(this.getSpectrumAt(0),w(Math.floor(this.xPixel10-this.imageView.xPixels)),this.yPixel0)});c(b,"findNearestMaxMin",function(){if(1<this.nSpectra&&
0>this.iSpectrumClicked)return!1;this.xValueMovedTo=this.getSpectrum().findXForPeakNearest(this.xValueMovedTo);this.setXPixelMovedTo(this.xValueMovedTo,1.7976931348623157E308,0,0);return!Double.isNaN(this.xValueMovedTo)});c(b,"setXPixelMovedTo",function(a,d,b,c){1.7976931348623157E308==a&&1.7976931348623157E308==d?(this.xPixelMovedTo=b,this.xPixelMovedTo2=c,this.isLinked&&this.sticky2Dcursor&&this.pd.setlinkedXMove(this,this.toX(this.xPixelMovedTo),!1)):(1.7976931348623157E308!=a&&(this.xPixelMovedTo=
this.toPixelX(a),this.fixX(this.xPixelMovedTo)!=this.xPixelMovedTo&&(this.xPixelMovedTo=-1),this.xPixelMovedTo2=-1,1E10!=a&&this.setSpectrumClicked(this.getFixedSelectedSpectrumIndex())),1.7976931348623157E308!=d&&(this.xPixelMovedTo2=this.toPixelX(d)))},"~N,~N,~N,~N");c(b,"processPendingMeasurement",function(a,d,b){if(!this.isInPlotRegion(a,d)||this.is2dClick(a,d))this.pendingMeasurement=null;else{var c=this.toX(a),f=this.toY(d),g=c;switch(b){case 0:this.pendingMeasurement.setPt2(this.toX(a),this.toY(d));
break;case 3:case 2:if(0>this.iSpectrumClicked)break;var e=this.spectra.get(this.iSpectrumClicked);this.setScale(this.iSpectrumClicked);3!=b&&(b=this.findMeasurement(this.selectedSpectrumMeasurements,a,d,1),null!=b?(c=b.getXVal(),f=b.getYVal()):null!=(b=this.findMeasurement(this.selectedSpectrumMeasurements,a,d,2))?(c=b.getXVal2(),f=b.getYVal2()):c=this.getNearestPeak(e,c,f));this.pendingMeasurement=(new JSV.common.Measurement).setM1(c,f,e);this.pendingMeasurement.setPt2(g,f);this.pd.setTaintedAll();
this.pd.repaint();break;case 1:case -2:case -3:for(g=null!=this.pendingMeasurement&&this.isVisible(this.getDialog(JSV.common.Annotation.AType.Measurements,-1));g;){this.setScale(this.getSpectrumIndex(this.pendingMeasurement.spec));if(3!=b){if(!this.findNearestMaxMin()){g=!1;break}a=this.xPixelMovedTo}c=this.toX(a);f=this.toY(d);this.pendingMeasurement.setPt2(c,f);if(0==this.pendingMeasurement.text.length){g=!1;break}this.setMeasurement(this.pendingMeasurement);if(1!=b){g=!1;break}this.setSpectrumClicked(this.getSpectrumIndex(this.pendingMeasurement.spec));
this.pendingMeasurement=(new JSV.common.Measurement).setM1(c,f,this.pendingMeasurement.spec);break}g||(this.pendingMeasurement=null);this.pd.setTaintedAll();this.pd.repaint();break;case 5:this.findNearestMaxMin()?(a=this.getFixedSelectedSpectrumIndex(),Double.isNaN(this.lastXMax)||this.lastSpecClicked!=a||null==this.pendingMeasurement?(this.lastXMax=this.xValueMovedTo,this.lastSpecClicked=a,this.pendingMeasurement=(new JSV.common.Measurement).setM1(this.xValueMovedTo,this.yValueMovedTo,this.spectra.get(a))):
(this.pendingMeasurement.setPt2(this.xValueMovedTo,this.yValueMovedTo),0<this.pendingMeasurement.text.length&&this.setMeasurement(this.pendingMeasurement),this.pendingMeasurement=null,this.lastXMax=NaN)):this.lastXMax=NaN}}},"~N,~N,~N");c(b,"checkIntegralNormalizationClick",function(a,d){if(null==this.selectedSpectrumIntegrals)return!1;var b=this.findMeasurement(this.selectedSpectrumIntegrals,a,d,-5);if(null==b)return!1;this.selectedIntegral=b;this.pd.normalizeIntegral();this.updateDialog(JSV.common.Annotation.AType.Integration,
-1);this.setSpectrumClicked(this.getSpectrumIndex(b.spec));return!0},"~N,~N");c(b,"getNearestPeak",function(a,d,b){var c=JSV.common.Coordinate.getNearestXWithYAbove(a.getXYCoords(),d,b,a.isInverted(),!1);a=JSV.common.Coordinate.getNearestXWithYAbove(a.getXYCoords(),d,b,a.isInverted(),!0);return Double.isNaN(c)?a:Double.isNaN(a)?c:Math.abs(c-d)<Math.abs(a-d)?c:a},"JSV.common.Spectrum,~N,~N");c(b,"findMeasurement",function(a,d,b,c){if(null==a||0==a.size())return null;if(0==c){var f=this.findMeasurement(a,
d,b,-1);return null!=f||C(a.get(0),"JSV.common.Integral")?f:this.findMeasurement(a,d,b,-2)}for(var g=a.size();0<=--g;){var f=a.get(g),e,l,m,x;C(f,"JSV.common.Integral")?(e=l=this.toPixelX(f.getXVal2()),m=this.toPixelYint(f.getYVal()),x=this.toPixelYint(f.getYVal2())):(e=this.toPixelX(f.getXVal()),l=this.toPixelX(f.getXVal2()),m=x=-2==c?this.yPixel1-2:this.toPixelY(f.getYVal()));switch(c){case 1:if(4>Math.abs(d-e)+Math.abs(b-m))return f;break;case 2:if(4>Math.abs(d-l)+Math.abs(b-x))return f;break;
case -5:m=x=w((m+x)/2),l=e+20;default:case -1:case -2:if(JSV.common.GraphSet.isOnLine(d,b,e,m,l,x))return f}}return null},"JSV.common.MeasurementData,~N,~N,~N");c(b,"setMeasurement",function(a){var d=this.getSpectrumIndex(a.spec),b=this.getDialog(JSV.common.Annotation.AType.Measurements,d);null==b&&this.addDialog(d,JSV.common.Annotation.AType.Measurements,b=new JSV.common.MeasurementData(JSV.common.Annotation.AType.Measurements,a.spec));b.getData().addLast(a.copyM());this.updateDialog(JSV.common.Annotation.AType.Measurements,
-1)},"JSV.common.Measurement");c(b,"checkArrowUpDownClick",function(a,d){var b=!1,c=this.isArrowClick(a,d,3)?JSV.common.GraphSet.RT2:this.isArrowClick(a,d,4)?1/JSV.common.GraphSet.RT2:0;if(0!=c){1<this.nSplit&&this.setSpectrumSelected(this.iSpectrumMovedTo);if((1==this.nSpectra||0<=this.iSpectrumSelected)&&this.spectra.get(this.getFixedSelectedSpectrumIndex()).isTransmittance())c=1/c;this.viewData.scaleSpectrum(null==this.imageView?this.iSpectrumSelected:-2,c);b=!0}else this.isArrowClick(a,d,-1)&&
(this.resetViewCompletely(),b=!0);b&&(null!=this.imageView&&(this.update2dImage(!1),this.resetPinsFromView()),this.pd.setTaintedAll());return b},"~N,~N");c(b,"resetViewCompletely",function(){this.clearViews();this.showAllStacked&&!this.stackSelected&&this.closeDialogsExcept(JSV.common.Annotation.AType.NONE);this.viewData.resetScaleFactors();this.updateDialogs()});c(b,"checkArrowLeftRightClick",function(a,d){if(this.haveLeftRightArrows){var b=this.isArrowClick(a,d,1)?-1:this.isArrowClick(a,d,2)?1:
0;if(0!=b)return this.setSpectrumClicked((this.iSpectrumSelected+b)%this.nSpectra),!0;if(this.isArrowClick(a,d,0)){if(this.showAllStacked)return this.showAllStacked=!1,this.setSpectrumClicked(this.getFixedSelectedSpectrumIndex()),!0;this.showAllStacked=this.allowStacking;this.setSpectrumSelected(-1);this.stackSelected=!1}}return!1},"~N,~N");c(b,"isArrowClick",function(a,d,b){switch(b){case 3:case 4:case -1:return b=w((this.yPixel00+this.yPixel11)/2)+15*(3==b?-1:4==b?1:0),10>Math.abs(this.xVArrows-
a)&&10>Math.abs(b-d);case 1:case 2:case 0:return b=this.xHArrows+15*(1==b?-1:2==b?1:0),10>Math.abs(b-a)&&10>Math.abs(this.yHArrows-d)}return!1},"~N,~N,~N");c(b,"setWidgetValueByUser",function(a){var d;d=a===this.cur2Dy?""+this.imageView.toSubspectrumIndex(a.yPixel0):a===this.pin1Dx01?""+Math.min(this.pin1Dx0.getXVal(),this.pin1Dx1.getXVal())+" - "+Math.max(this.pin1Dx0.getXVal(),this.pin1Dx1.getXVal()):a===this.pin1Dy01?""+Math.min(this.pin1Dy0.getYVal(),this.pin1Dy1.getYVal())+" - "+Math.max(this.pin1Dy0.getYVal(),
this.pin1Dy1.getYVal()):a===this.pin2Dx01?""+Math.min(this.pin2Dx0.getXVal(),this.pin2Dx1.getXVal())+" - "+Math.max(this.pin2Dx0.getXVal(),this.pin2Dx1.getXVal()):a===this.pin2Dy01?""+w(Math.min(this.pin2Dy0.getYVal(),this.pin2Dy1.getYVal()))+" - "+w(Math.max(this.pin2Dy0.getYVal(),this.pin2Dy1.getYVal())):""+a.getValue();d=this.pd.getInput("New value?","Set Slider",d);if(null!=d){d=d.trim();try{if(a===this.pin1Dx01||a===this.pin1Dy01||a===this.pin2Dx01||a===this.pin2Dy01){var b=d.indexOf("-",1);
if(!(0>b)){var c=Double.$valueOf(d.substring(0,b)).doubleValue(),f=Double.$valueOf(d.substring(b+1)).doubleValue();a===this.pin1Dx01?this.doZoom(c,this.pin1Dy0.getYVal(),f,this.pin1Dy1.getYVal(),!0,!1,!1,!0,!0):a===this.pin1Dy01?this.doZoom(this.pin1Dx0.getXVal(),c,this.pin1Dx1.getXVal(),f,null==this.imageView,null==this.imageView,!1,!1,!0):a===this.pin2Dx01?(this.imageView.setView0(this.imageView.toPixelX0(c),this.pin2Dy0.yPixel0,this.imageView.toPixelX0(f),this.pin2Dy1.yPixel0),this.doZoom(c,this.pin1Dy0.getYVal(),
f,this.pin1Dy1.getYVal(),!1,!1,!1,!0,!0)):a===this.pin2Dy01&&(this.imageView.setView0(this.pin2Dx0.xPixel0,this.imageView.toPixelY0(c),this.pin2Dx1.xPixel0,this.imageView.toPixelY0(f)),this.doZoom(this.imageView.toX(this.imageView.xPixel0),this.getScale().minY,this.imageView.toX(this.imageView.xPixel0+this.imageView.xPixels-1),this.getScale().maxY,!1,!1,!1,!1,!0))}}else{var g=Double.$valueOf(d).doubleValue();a.isXtype?(f=a===this.pin1Dx0||a===this.cur2Dx0||a===this.pin2Dx0?this.pin1Dx1.getXVal():
this.pin1Dx0.getXVal(),this.doZoom(g,0,f,0,!a.is2D,!1,!1,!0,!0)):a===this.cur2Dy?this.setCurrentSubSpectrum(w(g)):a===this.pin2Dy0||a===this.pin2Dy1?(f=a===this.pin2Dy0?this.pin2Dy1.yPixel0:this.pin2Dy0.yPixel0,this.imageView.setView0(this.pin2Dx0.xPixel0,this.imageView.subIndexToPixelY(w(g)),this.pin2Dx1.xPixel0,f)):(f=a===this.pin1Dy0?this.pin1Dy1.getYVal():this.pin1Dy0.getYVal(),this.doZoom(this.pin1Dx0.getXVal(),g,this.pin1Dx1.getXVal(),f,null==this.imageView,null==this.imageView,!1,!1,!0))}}catch(e){if(!y(e,
Exception))throw e;}}},"JSV.common.PlotWidget");c(b,"removeAllHighlights",function(a){if(null==a)this.highlights.clear();else for(var d=this.highlights.size();0<=--d;)this.highlights.get(d).spectrum===a&&this.highlights.removeItemAt(d)},"JSV.common.Spectrum");c(b,"setCoordClicked",function(a,d,b){0==b&&(this.nextClickForSetPeak=null);if(Double.isNaN(d))return this.pd.coordClicked=null,this.pd.coordsClicked=null;this.pd.coordClicked=(new JSV.common.Coordinate).set(this.lastClickX=d,b);this.pd.coordsClicked=
this.getSpectrum().getXYCoords();this.pd.xPixelClicked=this.lastPixelX=a;return this.pd.coordClicked},"~N,~N,~N");c(b,"setWidgets",function(a,d,b){if(a||null==this.pin1Dx0)null==this.zoomBox1D?this.newPins():this.resetPinPositions();this.setDerivedPins(d);this.setPinSliderPositions(b)},"~B,~N,~B");c(b,"newPins",function(){this.zoomBox1D=new JSV.common.PlotWidget("zoomBox1D");this.pin1Dx0=new JSV.common.PlotWidget("pin1Dx0");this.pin1Dx1=new JSV.common.PlotWidget("pin1Dx1");this.pin1Dy0=new JSV.common.PlotWidget("pin1Dy0");
this.pin1Dy1=new JSV.common.PlotWidget("pin1Dy1");this.pin1Dx01=new JSV.common.PlotWidget("pin1Dx01");this.pin1Dy01=new JSV.common.PlotWidget("pin1Dy01");this.cur1D2x1=new JSV.common.PlotWidget("cur1D2x1");this.cur1D2x1.color=JSV.common.ScriptToken.PEAKTABCOLOR;this.cur1D2x2=new JSV.common.PlotWidget("cur1D2x2");this.cur1D2x2.color=JSV.common.ScriptToken.PEAKTABCOLOR;if(null!=this.imageView){this.zoomBox2D=new JSV.common.PlotWidget("zoomBox2D");this.pin2Dx0=new JSV.common.PlotWidget("pin2Dx0");this.pin2Dx1=
new JSV.common.PlotWidget("pin2Dx1");this.pin2Dy0=new JSV.common.PlotWidget("pin2Dy0");this.pin2Dy1=new JSV.common.PlotWidget("pin2Dy1");this.pin2Dx01=new JSV.common.PlotWidget("pin2Dx01");this.pin2Dy01=new JSV.common.PlotWidget("pin2Dy01");this.cur2Dx0=new JSV.common.PlotWidget("cur2Dx0");this.cur2Dx1=new JSV.common.PlotWidget("cur2Dx1");this.cur2Dy=new JSV.common.PlotWidget("cur2Dy");this.pin2Dy0.setY(0,this.imageView.toPixelY0(0));var a=this.getSpectrumAt(0).getSubSpectra().size();this.pin2Dy1.setY(a,
this.imageView.toPixelY0(a))}this.setWidgetX(this.pin1Dx0,this.getScale().minX);this.setWidgetX(this.pin1Dx1,this.getScale().maxX);this.setWidgetY(this.pin1Dy0,this.getScale().minY);this.setWidgetY(this.pin1Dy1,this.getScale().maxY);this.widgets=B(-1,[this.zoomBox1D,this.zoomBox2D,this.pin1Dx0,this.pin1Dx01,this.pin1Dx1,this.pin1Dy0,this.pin1Dy01,this.pin1Dy1,this.pin2Dx0,this.pin2Dx01,this.pin2Dx1,this.pin2Dy0,this.pin2Dy01,this.pin2Dy1,this.cur2Dx0,this.cur2Dx1,this.cur2Dy,this.cur1D2x1,this.cur1D2x2])});
c(b,"setWidgetX",function(a,d){a.setX(d,this.toPixelX0(d))},"JSV.common.PlotWidget,~N");c(b,"setWidgetY",function(a,d){a.setY(d,this.toPixelY0(d))},"JSV.common.PlotWidget,~N");c(b,"resetPinsFromView",function(){null!=this.pin1Dx0&&(this.setWidgetX(this.pin1Dx0,this.getScale().minXOnScale),this.setWidgetX(this.pin1Dx1,this.getScale().maxXOnScale),this.setWidgetY(this.pin1Dy0,this.getScale().minYOnScale),this.setWidgetY(this.pin1Dy1,this.getScale().maxYOnScale))});c(b,"resetPinPositions",function(){this.resetX(this.pin1Dx0);
this.resetY(this.pin1Dy0);this.resetY(this.pin1Dy1);null==this.imageView?(null!=this.gs2dLinkedX&&this.resetX(this.cur1D2x1),null!=this.gs2dLinkedY&&this.resetX(this.cur1D2x2)):(this.pin2Dy0.setY(this.pin2Dy0.getYVal(),this.imageView.toPixelY0(this.pin2Dy0.getYVal())),this.pin2Dy1.setY(this.pin2Dy1.getYVal(),this.imageView.toPixelY0(this.pin2Dy1.getYVal())))});c(b,"resetX",function(a){this.setWidgetX(a,a.getXVal())},"JSV.common.PlotWidget");c(b,"resetY",function(a){this.setWidgetY(a,a.getYVal())},
"JSV.common.PlotWidget");c(b,"setPinSliderPositions",function(a){this.pin1Dx0.yPixel0=this.pin1Dx1.yPixel0=this.pin1Dx01.yPixel0=this.yPixel0-5;this.pin1Dx0.yPixel1=this.pin1Dx1.yPixel1=this.pin1Dx01.yPixel1=this.yPixel0;this.cur1D2x1.yPixel1=this.cur1D2x2.yPixel1=this.yPixel0-5;this.cur1D2x1.yPixel0=this.cur1D2x2.yPixel0=this.yPixel1+6;null==this.imageView?(this.pin1Dy0.xPixel0=this.pin1Dy1.xPixel0=this.pin1Dy01.xPixel0=this.xPixel1+5,this.pin1Dy0.xPixel1=this.pin1Dy1.xPixel1=this.pin1Dy01.xPixel1=
this.xPixel1):(this.pin1Dy0.xPixel0=this.pin1Dy1.xPixel0=this.pin1Dy01.xPixel0=this.imageView.xPixel1+15,this.pin1Dy0.xPixel1=this.pin1Dy1.xPixel1=this.pin1Dy01.xPixel1=this.imageView.xPixel1+10,this.pin2Dx0.yPixel0=this.pin2Dx1.yPixel0=this.pin2Dx01.yPixel0=this.yPixel0-5,this.pin2Dx0.yPixel1=this.pin2Dx1.yPixel1=this.pin2Dx01.yPixel1=this.yPixel0,this.pin2Dy0.xPixel0=this.pin2Dy1.xPixel0=this.pin2Dy01.xPixel0=this.imageView.xPixel1+5,this.pin2Dy0.xPixel1=this.pin2Dy1.xPixel1=this.pin2Dy01.xPixel1=
this.imageView.xPixel1,this.cur2Dx0.yPixel0=this.cur2Dx1.yPixel0=this.yPixel1+6,this.cur2Dx0.yPixel1=this.cur2Dx1.yPixel1=this.yPixel0-5,this.cur2Dx0.yPixel0=this.cur2Dx1.yPixel0=this.yPixel1+6,this.cur2Dx1.yPixel1=this.cur2Dx1.yPixel1=this.yPixel0-5,this.cur2Dy.xPixel0=a?w((this.xPixel1+this.imageView.xPixel0)/2):this.imageView.xPixel0-6,this.cur2Dy.xPixel1=this.imageView.xPixel1+5)},"~B");c(b,"setDerivedPins",function(a){null!=this.gs2dLinkedX&&this.cur1D2x1.setX(this.cur1D2x1.getXVal(),this.toPixelX(this.cur1D2x1.getXVal()));
null!=this.gs2dLinkedY&&this.cur1D2x2.setX(this.cur1D2x2.getXVal(),this.toPixelX(this.cur1D2x2.getXVal()));this.pin1Dx01.setX(0,w((this.pin1Dx0.xPixel0+this.pin1Dx1.xPixel0)/2));this.pin1Dy01.setY(0,w((this.pin1Dy0.yPixel0+this.pin1Dy1.yPixel0)/2));this.pin1Dx01.setEnabled(Math.min(this.pin1Dx0.xPixel0,this.pin1Dx1.xPixel0)>this.xPixel0||Math.max(this.pin1Dx0.xPixel0,this.pin1Dx1.xPixel0)<this.xPixel1);this.pin1Dy01.setEnabled(Math.min(this.pin1Dy0.yPixel0,this.pin1Dy1.yPixel0)>Math.min(this.toPixelY(this.getScale().minY),
this.toPixelY(this.getScale().maxY))||Math.max(this.pin1Dy0.yPixel0,this.pin1Dy1.yPixel0)<Math.max(this.toPixelY(this.getScale().minY),this.toPixelY(this.getScale().maxY)));if(null!=this.imageView){var d=this.pin1Dx0.getXVal();this.cur2Dx0.setX(d,this.imageView.toPixelX(d));d=this.pin1Dx1.getXVal();this.cur2Dx1.setX(d,this.imageView.toPixelX(d));d=this.imageView.toX(this.imageView.xPixel0);this.pin2Dx0.setX(d,this.imageView.toPixelX0(d));d=this.imageView.toX(this.imageView.xPixel1);this.pin2Dx1.setX(d,
this.imageView.toPixelX0(d));this.pin2Dx01.setX(0,w((this.pin2Dx0.xPixel0+this.pin2Dx1.xPixel0)/2));d=this.imageView.imageHeight-1-this.imageView.yView1;this.pin2Dy0.setY(d,this.imageView.toPixelY0(d));d=this.imageView.imageHeight-1-this.imageView.yView2;this.pin2Dy1.setY(d,this.imageView.toPixelY0(d));this.pin2Dy01.setY(0,w((this.pin2Dy0.yPixel0+this.pin2Dy1.yPixel0)/2));this.cur2Dy.yPixel0=this.cur2Dy.yPixel1=this.imageView.subIndexToPixelY(a);this.pin2Dx01.setEnabled(Math.min(this.pin2Dx0.xPixel0,
this.pin2Dx1.xPixel0)!=this.imageView.xPixel0||Math.max(this.pin2Dx0.xPixel0,this.pin2Dx1.xPixel1)!=this.imageView.xPixel1);this.pin2Dy01.setEnabled(Math.min(this.pin2Dy0.yPixel0,this.pin2Dy1.yPixel0)!=this.yPixel0||Math.max(this.pin2Dy0.yPixel0,this.pin2Dy1.yPixel1)!=this.yPixel1)}},"~N");c(b,"doZoom",function(a,d,b,c,f,g,e,l,m){a==b?(a=this.getScale().minXOnScale,b=this.getScale().maxXOnScale):this.isLinked&&l&&this.pd.doZoomLinked(this,a,b,m,e,f);a>b&&(l=a,a=b,b=l);d>c&&(l=d,d=c,c=l);l=!f&&null!=
this.imageView&&(this.imageView.minZ!=d||this.imageView.maxZ!=c);if(this.zoomEnabled||l){if(e){if(!this.getScale().isInRangeX(a)&&!this.getScale().isInRangeX(b))return;this.getScale().isInRangeX(a)?this.getScale().isInRangeX(b)||(b=this.getScale().maxX):a=this.getScale().minX}this.pd.setTaintedAll();e=this.viewData.getScaleData();var x=F(this.nSpectra,0),n=F(this.nSpectra,0);this.graphsTemp.clear();var p=this.getSpectrumAt(0).getSubSpectra(),p=null==p||2==p.size();if(this.getSpectrumAt(0).is1D()&&
!p){if(this.graphsTemp.addLast(this.getSpectrum()),!JSV.common.ScaleData.setDataPointIndices(this.graphsTemp,a,b,3,x,n))return}else if(!JSV.common.ScaleData.setDataPointIndices(this.spectra,a,b,3,x,n))return;if(p=d==c)f=!l&&f?f=this.getScale().spectrumScaleFactor:1,1E-4>Math.abs(f-1)&&(d=this.getScale().minYOnScale,c=this.getScale().maxYOnScale);f=null;if(p||g)this.getCurrentView(),f=this.viewData.getNewScales(this.iSpectrumSelected,p,d,c);this.getView(a,b,d,c,x,n,e,f);this.setXPixelMovedTo(1E10,
1.7976931348623157E308,0,0);this.setWidgetX(this.pin1Dx0,a);this.setWidgetX(this.pin1Dx1,b);this.setWidgetY(this.pin1Dy0,d);this.setWidgetY(this.pin1Dy1,c);null==this.imageView?this.updateDialogs():(a=this.getSpectrumAt(0).getSubIndex(),b=this.imageView.fixSubIndex(a),b!=a&&this.setCurrentSubSpectrum(b),l&&this.update2dImage(!1));m&&this.addCurrentZoom()}},"~N,~N,~N,~N,~B,~B,~B,~B,~B");c(b,"updateDialogs",function(){this.updateDialog(JSV.common.Annotation.AType.PeakList,-1);this.updateDialog(JSV.common.Annotation.AType.Measurements,
-1)});c(b,"setCurrentSubSpectrum",function(a){var d=this.getSpectrumAt(0);a=d.setCurrentSubSpectrum(a);d.isForcedSubset()&&this.viewData.setXRangeForSubSpectrum(this.getSpectrum().getXYCoords());this.pd.notifySubSpectrumChange(a,this.getSpectrum())},"~N");c(b,"addCurrentZoom",function(){if(this.viewList.size()>this.currentZoomIndex+1)for(var a=this.viewList.size()-1;a>this.currentZoomIndex;a--)this.viewList.removeItemAt(a);this.viewList.addLast(this.viewData);this.currentZoomIndex++});c(b,"setZoomTo",
function(a){this.currentZoomIndex=a;this.viewData=this.viewList.get(a);this.resetPinsFromView()},"~N");c(b,"clearViews",function(){this.isLinked&&this.pd.clearLinkViews(this);this.setZoom(0,0,0,0);for(var a=this.viewList.size();1<=--a;)this.viewList.removeItemAt(a)});c(b,"drawAll",function(a,d,b,c,f,g,e){this.setPositionForFrame(c);this.g2d=this.pd.g2d;this.gMain=a;var l=this.getSpectrumAt(0),m=l.getSubIndex();this.is2DSpectrum=!l.is1D()&&(this.isLinked||this.pd.getBoolean(JSV.common.ScriptToken.DISPLAY2D))&&
(null!=this.imageView||this.get2DImage(l));null!=this.imageView&&g&&(this.isPrintingOrSaving&&this.g2d.newGrayScaleImage(a,this.image2D,this.imageView.imageWidth,this.imageView.imageHeight,this.imageView.getBuffer()),this.is2DSpectrum&&this.setPositionForFrame(c),this.draw2DImage());var x=this.stackSelected||!this.showAllStacked?this.iSpectrumSelected:-1,n=!this.showAllStacked||1==this.nSpectra||0<=x,l=null==this.imageView||this.pd.display1D,p=0<=x?1:0,j=this.getFixedSelectedSpectrumIndex();if(l&&
g&&(this.fillBox(a,this.xPixel0,this.yPixel0,this.xPixel1,this.yPixel1,JSV.common.ScriptToken.PLOTAREACOLOR),0>x)){n=!0;for(x=0;x<this.nSpectra;x++)this.doPlot(x,c)&&0!=p++&&(n=(new Boolean(n&this.viewData.areYScalesSame(x-1,x))).valueOf())}var q=1==this.nSpectra?0:!this.showAllStacked?this.iSpectrumMovedTo:this.iSpectrumSelected;b=b===a?d:b;if(g){var x=this.pd.getCurrentGraphSet()===this&&!this.isLinked&&(!this.isSplittable||1==this.nSplit||this.pd.currentSplitPoint==c),r=this.zoomEnabled&&!this.isPrintingOrSaving&&
!this.isDrawNoSpectra()&&this.pd.isCurrentGraphSet(this)&&this.spectra.get(0).isScalable()&&(x||1==this.nSpectra)&&(1==this.nSplit||this.pd.currentSplitPoint==this.iSpectrumMovedTo);this.drawFrame(a,q,x,this.isSplittable,r)}if(this.pd.isCurrentGraphSet(this)&&c==this.pd.currentSplitPoint&&(2>p||0<=this.iSpectrumSelected))this.$haveSelectedSpectrum=!0;this.haveSingleYScale=this.showAllStacked&&1<this.nSpectra?this.allowStackedYScale&&n:!0;if(l){n=I(this.yPixels*(this.yStackOffsetPercent/100));this.haveLeftRightArrows=
!1;for(p=x=0;x<this.nSpectra;x++)if(this.doPlot(x,c)){var q=this.spectra.get(x),r=q.isContinuous(),s=!this.pd.isPrinting&&0<=this.iSpectrumMovedTo&&(1<this.nSplit?x==this.iSpectrumMovedTo:this.isLinked||x==j),u=this.stackSelected&&0<=this.iSpectrumSelected&&this.iSpectrumSelected!=x,v=!this.reversePlot&&this.getShowAnnotation(JSV.common.Annotation.AType.Integration,x)&&(!this.showAllStacked||this.iSpectrumSelected==x)?this.getDialog(JSV.common.Annotation.AType.Integration,x).getData():null;this.setScale(x);
1<this.nSplit&&(j=x);var w=!u&&(1==this.nSplit||this.showAllStacked||this.iSpectrumSelected==c),y=w&&this.$haveSelectedSpectrum&&x==j;w&&(this.widgetsAreSet=!0,this.resetPinsFromView(),this.drawWidgets(d,b,m,f,l,y,!1));this.haveSingleYScale&&(x==j&&g)&&(this.drawGrid(a),this.pd.isPrinting&&(1==this.nSplit&&1==this.pd.graphSets.size())&&this.drawSpectrumSource(a,x));w&&this.drawWidgets(d,b,m,!1,l,y,!0);!this.isDrawNoSpectra()&&(!this.isPrintingOrSaving&&(1==this.nSpectra||0<=this.iSpectrumSelected)&&
(this.haveSingleYScale&&x==j||this.showAllStacked&&this.stackSelected&&x==this.iSpectrumSelected))&&this.drawHighlightsAndPeakTabs(d,b,x);g&&((s||this.isPrintingOrSaving)&&!this.is2DSpectrum&&this.pd.titleOn&&!this.pd.titleDrawn&&this.drawTitle(x,a),this.haveSingleYScale&&x==j&&this.pd.getBoolean(JSV.common.ScriptToken.YSCALEON)&&this.drawYScale(a,this),this.haveSingleYScale&&30>this.yPixel00&&this.pd.getBoolean(JSV.common.ScriptToken.YUNITSON)&&this.drawYUnits(a));w=!u&&null!=this.pendingIntegral&&
q===this.pendingIntegral.spec;if(g||w)this.drawPlot(w&&!g?d:a,x,q,r,p,u,null,s,w,e);this.drawIntegration(d,x,p,u,v,r&&s);this.drawMeasurements(d,x);null!=this.pendingMeasurement&&this.pendingMeasurement.spec===q&&this.drawMeasurement(d,this.pendingMeasurement);r&&(s&&0<=this.xPixelMovedTo)&&this.drawSpectrumPointer(d,q,p,v);1<this.nSpectra&&(1==this.nSplit&&this.pd.isCurrentGraphSet(this)&&g)&&(this.haveLeftRightArrows=!0,this.isPrintingOrSaving||(this.setScale(0),q=this.iSpectrumSelected,2!=this.nSpectra&&
(this.setPlotColor(a,(q+this.nSpectra-1)%this.nSpectra),this.fillArrow(a,1,this.yHArrows,this.xHArrows-9,!0),this.setCurrentBoxColor(a),this.fillArrow(a,1,this.yHArrows,this.xHArrows-9,!1)),0<=q&&(this.setPlotColor(a,q),this.fillCircle(a,this.xHArrows,this.yHArrows,!0)),this.setCurrentBoxColor(a),this.fillCircle(a,this.xHArrows,this.yHArrows,!1),this.setPlotColor(a,(q+1)%this.nSpectra),this.fillArrow(a,2,this.yHArrows,this.xHArrows+9,!0),this.setCurrentBoxColor(a),this.fillArrow(a,2,this.yHArrows,
this.xHArrows+9,!1)));p-=n}g&&(this.pd.getBoolean(JSV.common.ScriptToken.XSCALEON)&&this.drawXScale(a,this),this.pd.getBoolean(JSV.common.ScriptToken.XUNITSON)&&this.drawXUnits(a))}else g&&(this.pd.getBoolean(JSV.common.ScriptToken.XSCALEON)&&this.drawXScale(a,this.imageView),this.pd.getBoolean(JSV.common.ScriptToken.YSCALEON)&&this.drawYScale(a,this.imageView),0<=m&&this.draw2DUnits(a)),this.drawWidgets(d,b,m,f,l,!0,!1),this.drawWidgets(d,b,m,f,l,!0,!0),this.widgetsAreSet=!0;null!=this.annotations&&
this.drawAnnotations(d,this.annotations,null);this.isPrintingOrSaving=!1},"~O,~O,~O,~N,~B,~B,~B");c(b,"drawTitle",function(a,d){var b=this.getSpectrumAt(a).getPeakTitle();0<b.length&&(this.pd.drawTitle(d,this.isPrintingOrSaving?this.yPixel11+20:this.height,this.width,b),this.pd.titleDrawn=!this.isPrintingOrSaving)},"~N,~O");c(b,"drawSpectrumSource",function(a,d){this.pd.printFilePath(a,this.pd.thisWidth-this.pd.right,this.yPixel0-20,this.spectra.get(d).getFilePath())},"~O,~N");c(b,"doPlot",function(a,
d){var b=this.stackSelected&&0<=this.iSpectrumSelected&&this.iSpectrumSelected!=a,c=this.showAllStacked||-1==this.iSpectrumSelected||this.iSpectrumSelected==a;return 1<this.nSplit?a==d:c&&(!this.pd.isPrinting||!b)},"~N,~N");c(b,"drawSpectrumPointer",function(a,d,b,c){if(!this.isPrintingOrSaving){this.setColorFromToken(a,JSV.common.ScriptToken.PEAKTABCOLOR);var f=this.pd.integralShiftMode;null!=c&&((!this.pd.ctrlPressed||this.pd.isIntegralDrag)&&!this.isOnSpectrum(this.pd.mouseX,this.pd.mouseY,-1)?
c=null:0==f&&(f=this.getShiftMode(this.pd.mouseX,this.pd.mouseY),0==f&&(f=2147483647)));var g=this.yValueMovedTo;this.yValueMovedTo=null==c?d.getYValueAt(this.xValueMovedTo):c.getPercentYValueAt(this.xValueMovedTo);this.setCoordStr(this.xValueMovedTo,this.yValueMovedTo);if(0!=f&&(this.setPlotColor(a,2147483647==f?-1:0),(0>f||2147483647==f)&&this.drawHandle(a,this.xPixelPlot1,this.yPixelPlot0,3,!1),0<f&&this.drawHandle(a,this.xPixelPlot0,this.yPixelPlot1,3,!1),2147483647!=f))return;null!=c&&this.g2d.setStrokeBold(a,
!0);Double.isNaN(g)||null!=this.pendingMeasurement?(this.g2d.drawLine(a,this.xPixelMovedTo,this.yPixel0,this.xPixelMovedTo,this.yPixel1),0<=this.xPixelMovedTo2&&this.g2d.drawLine(a,this.xPixelMovedTo2,this.yPixel0,this.xPixelMovedTo2,this.yPixel1),this.yValueMovedTo=NaN):(d=null==c?b+this.toPixelY(this.yValueMovedTo):this.toPixelYint(this.yValueMovedTo/100),d==this.fixY(d)&&this.g2d.drawLine(a,this.xPixelMovedTo,d-10,this.xPixelMovedTo,d+10));null!=c&&this.g2d.setStrokeBold(a,!1)}},"~O,JSV.common.Spectrum,~N,JSV.common.IntegralData");
c(b,"setScale",function(a){this.viewData.setScale(a,this.xPixels,this.yPixels,this.spectra.get(a).isInverted())},"~N");c(b,"draw2DUnits",function(a){var d=this.getSpectrumAt(0).nucleusX,b=this.getSpectrumAt(0).nucleusY;this.setColorFromToken(a,JSV.common.ScriptToken.PLOTCOLOR);this.drawUnits(a,d,this.imageView.xPixel1+5*this.pd.scalingFactor,this.yPixel1,1,1);this.drawUnits(a,b,this.imageView.xPixel0-5*this.pd.scalingFactor,this.yPixel0,1,0)},"~O");c(b,"drawPeakTabs",function(a,d,b){if(!this.isPrintingOrSaving){var c=
1==this.nSpectra||0<=this.iSpectrumSelected?b.getPeakList():null;if(null!=c&&0<c.size()){null!=this.piMouseOver&&this.piMouseOver.spectrum===b&&this.pd.isMouseUp()?(this.setColorFromToken(d,JSV.common.ScriptToken.PEAKOVERCOLOR),this.drawPeak(d,this.piMouseOver,0),b.setHighlightedPeak(this.piMouseOver)):b.setHighlightedPeak(null);this.setColorFromToken(a,JSV.common.ScriptToken.PEAKTABCOLOR);for(d=c.size();0<=--d;){var f=c.get(d);this.drawPeak(a,f,f===b.getSelectedPeak()?14:7)}}}},"~O,~O,JSV.common.Spectrum");
c(b,"drawPeak",function(a,d,b){if(!this.isPrintingOrSaving){var c=d.getXMin(),f=d.getXMax();c!=f&&this.drawBar(a,d,c,f,null,b)}},"~O,JSV.common.PeakInfo,~N");c(b,"drawWidgets",function(a,d,b,c,f,g,e){this.setWidgets(c,b,f);if(!this.isPrintingOrSaving||!(null==this.imageView?!this.cur1D2Locked:this.sticky2Dcursor)){!this.pd.isPrinting&&!e&&(f?(this.fillBox(a,this.xPixel0,this.pin1Dx0.yPixel1,this.xPixel1,this.pin1Dx1.yPixel1+2,JSV.common.ScriptToken.GRIDCOLOR),this.fillBox(a,this.pin1Dx0.xPixel0,this.pin1Dx0.yPixel1,
this.pin1Dx1.xPixel0,this.pin1Dx1.yPixel1+2,JSV.common.ScriptToken.PLOTCOLOR)):(this.fillBox(a,this.imageView.xPixel0,this.pin2Dx0.yPixel1,this.imageView.xPixel1,this.pin2Dx0.yPixel1+2,JSV.common.ScriptToken.GRIDCOLOR),this.fillBox(a,this.pin2Dx0.xPixel0,this.pin2Dx0.yPixel1,this.pin2Dx1.xPixel0,this.pin2Dx1.yPixel1+2,JSV.common.ScriptToken.PLOTCOLOR),this.fillBox(a,this.pin2Dy0.xPixel1,this.yPixel1,this.pin2Dy1.xPixel1+2,this.yPixel0,JSV.common.ScriptToken.GRIDCOLOR),this.fillBox(a,this.pin2Dy0.xPixel1,
this.pin2Dy0.yPixel1,this.pin2Dy1.xPixel1+2,this.pin2Dy1.yPixel0,JSV.common.ScriptToken.PLOTCOLOR)),this.fillBox(a,this.pin1Dy0.xPixel1,this.yPixel1,this.pin1Dy1.xPixel1+2,this.yPixel0,JSV.common.ScriptToken.GRIDCOLOR),g&&this.fillBox(a,this.pin1Dy0.xPixel1,this.pin1Dy0.yPixel1,this.pin1Dy1.xPixel1+2,this.pin1Dy1.yPixel0,JSV.common.ScriptToken.PLOTCOLOR));for(b=0;b<this.widgets.length;b++)if(c=this.widgets[b],!(null==c||!c.isPinOrCursor&&!this.zoomEnabled)){var l=c===this.cur1D2x1||c===this.cur1D2x2||
c===this.cur2Dx0||c===this.cur2Dx1||c===this.cur2Dy;if((c.isPin||!c.isPinOrCursor)!=e){if(c.is2D){if(c===this.cur2Dx0&&!f)continue}else{var m=c===this.pin1Dy0||c===this.pin1Dy1||c===this.pin1Dy01;if(null!=this.imageView&&f==m||m&&!g||c===this.cur1D2x1&&null==this.gs2dLinkedX||c===this.cur1D2x2&&null==this.gs2dLinkedY||c===this.zoomBox1D&&(this.pd.isIntegralDrag||0!=this.pd.integralShiftMode))if(!this.isLinked||null!=this.imageView)continue}if(!this.pd.isPrinting||l)c.isPinOrCursor?(this.setColorFromToken(a,
c.color),this.g2d.drawLine(a,c.xPixel0,c.yPixel0,c.xPixel1,c.yPixel1),c.isVisible=!0,c.isPin&&this.drawHandle(a,c.xPixel0,c.yPixel0,2,!c.isEnabled)):c.xPixel1!=c.xPixel0&&this.fillBox(d,c.xPixel0,c.yPixel0,c.xPixel1,c.yPixel1,c===this.zoomBox1D&&this.pd.shiftPressed?JSV.common.ScriptToken.ZOOMBOXCOLOR2:JSV.common.ScriptToken.ZOOMBOXCOLOR)}}}},"~O,~O,~N,~B,~B,~B,~B");c(b,"drawBar",function(a,d,b,c,f,g){b=this.toPixelX(b);c=this.toPixelX(c);if(b>c){var e=b;b=c;c=e}b=this.fixX(b);c=this.fixX(c);3>c-
b&&(b-=2,c+=2);null!=d&&d.setPixelRange(b,c);0==g?this.fillBox(a,b,this.yPixel0,c,this.yPixel0+this.yPixels,f):(this.fillBox(a,b,this.yPixel0+2,c,this.yPixel0+5,f),null!=d&&(b=w((b+c)/2),this.fillBox(a,b-1,this.yPixel0+2,b+1,this.yPixel0+2+g,f)))},"~O,JSV.common.PeakInfo,~N,~N,JSV.common.ScriptToken,~N");c(b,"drawIntegration",function(a,d,b,c,f){null!=f&&(this.haveIntegralDisplayed(d)&&this.drawPlot(a,d,this.spectra.get(d),!0,b,!1,f,!0,!1,!1),this.drawIntegralValues(a,d,b));d=this.getIntegrationRatios(d);
null!=d&&this.drawAnnotations(a,d,JSV.common.ScriptToken.INTEGRALPLOTCOLOR)},"~O,~N,~N,~B,JSV.common.IntegralData,~B");c(b,"getMeasurements",function(a,d){var b=this.getDialog(a,d);return null==b||0==b.getData().size()||!b.getState()?null:b.getData()},"JSV.common.Annotation.AType,~N");c(b,"drawPlot",function(a,d,b,c,f,g,e,l,m,x){var n=null==e?b.getXYCoords():this.getIntegrationGraph(d).getXYCoords(),p=null!=e;e=p?e.getBitSet():null;l=m||null!=b.fillColor&&l;g=g?-2:p?-1:!this.allowStacking?0:d;this.setPlotColor(a,
g);var q=!0,j=this.toPixelY(0);p?l=(new Boolean(l&j==this.fixY(j))).valueOf():j=this.fixY(j);var r=p||l?this.pd.getColor(JSV.common.ScriptToken.INTEGRALPLOTCOLOR):null;b=null==r||null==b.fillColor?r:b.fillColor;r=this.viewData.getStartingPointIndex(d);d=this.viewData.getEndingPointIndex(d);if(c&&!x){d--;(x=(p||null!=this.pendingIntegral)&&this.g2d.canDoLineTo())&&this.g2d.doStroke(a,!0);var s=!1;for(c=r;c<=d;c++){var u=n[c],w=n[c+1],v=p?this.toPixelYint(u.getYVal()):this.toPixelY(u.getYVal());if(-2147483648!=
v){var y=p?this.toPixelYint(w.getYVal()):this.toPixelY(w.getYVal());if(-2147483648!=y){var u=u.getXVal(),z=w.getXVal(),w=this.toPixelX(u),A=this.toPixelX(z),v=this.fixY(f+v),y=this.fixY(f+y);p&&(c==r&&(this.xPixelPlot1=w,this.yPixelPlot0=v),this.xPixelPlot0=A,this.yPixelPlot1=y);if(!(A==w&&v==y))if(l&&m&&this.pendingIntegral.overlaps(u,z))null!=b&&(this.g2d.doStroke(a,!1),this.g2d.setGraphicsColor(a,b)),this.g2d.fillRect(a,Math.min(w,A),Math.min(j,v),Math.max(1,Math.abs(A-w)),Math.abs(j-v)),null!=
b&&(this.g2d.doStroke(a,!1),this.g2d.doStroke(a,!0),s=!1,this.setPlotColor(a,g));else if(!(v==y&&v==this.yPixel0)&&(null!=e&&e.get(c)!=q&&(q=e.get(c),x&&s&&(this.g2d.doStroke(a,!1),this.g2d.doStroke(a,!0),s=!1),!this.pd.isPrinting&&0!=this.pd.integralShiftMode?this.setPlotColor(a,0):q?this.setColorFromToken(a,JSV.common.ScriptToken.INTEGRALPLOTCOLOR):this.setPlotColor(a,-3)),!this.pd.isPrinting||q))s?this.g2d.lineTo(a,A,y):(this.g2d.drawLine(a,w,v,A,y),s=x)}}}x&&this.g2d.doStroke(a,!1)}else{for(c=
r;c<=d;c++)m=n[c],y=this.toPixelY(m.getYVal()),-2147483648!=y&&(w=this.toPixelX(m.getXVal()),v=this.toPixelY(Math.max(this.getScale().minYOnScale,0)),v=this.fixY(f+v),y=this.fixY(f+y),v==y&&(v==this.yPixel0||v==this.yPixel1)||(x?this.g2d.fillRect(a,w-1,y-1,3,3):this.g2d.drawLine(a,w,v,w,y)));!x&&this.getScale().isYZeroOnScale()&&(f+=this.toPixelY(this.getScale().spectrumYRef),f==this.fixY(f)&&this.g2d.drawLine(a,this.xPixel1,f,this.xPixel0,f))}},"~O,~N,JSV.common.Spectrum,~B,~N,~B,JSV.common.IntegralData,~B,~B,~B");
c(b,"drawFrame",function(a,d,b,c,f){if(!this.pd.gridOn||this.isPrintingOrSaving)if(this.setColorFromToken(a,JSV.common.ScriptToken.GRIDCOLOR),this.g2d.drawRect(a,this.xPixel0,this.yPixel0,this.xPixels,this.yPixels),this.isPrintingOrSaving)return;this.setCurrentBoxColor(a);f&&(0<=d&&(this.setPlotColor(a,d),this.fillArrow(a,3,this.xVArrows,w((this.yPixel00+this.yPixel11)/2)-9,!0),this.fillArrow(a,4,this.xVArrows,w((this.yPixel00+this.yPixel11)/2)+9,!0),this.setCurrentBoxColor(a)),this.fillArrow(a,3,
this.xVArrows,w((this.yPixel00+this.yPixel11)/2)-9,!1),this.fillCircle(a,this.xVArrows,w((this.yPixel00+this.yPixel11)/2),!1),this.fillArrow(a,4,this.xVArrows,w((this.yPixel00+this.yPixel11)/2)+9,!1));if(null==this.imageView&&b){d=this.xPixel00+10;b=this.xPixel11-10;f=this.yPixel00+1;var g=this.yPixel11-2;this.g2d.drawLine(a,d,f,b,f);this.g2d.drawLine(a,b,f,b,g);this.g2d.drawLine(a,d,g,b,g);this.splitterX=this.closerX=-2147483648;this.drawBox(a,b-10,f,b,f+10,null);this.g2d.drawLine(a,b-10,f+10,b,
f);this.g2d.drawLine(a,b,f+10,b-10,f);this.closerX=b-10;this.closerY=f;c&&(b-=10,this.fillBox(a,b-10,f,b,f+10,null),this.splitterX=b-10,this.splitterY=f)}},"~O,~N,~B,~B,~B");c(b,"drawGrid",function(a){if(this.pd.gridOn&&null==this.imageView){this.setColorFromToken(a,JSV.common.ScriptToken.GRIDCOLOR);var d;if(Double.isNaN(this.getScale().firstX)){d=this.getScale().maxXOnScale+this.getScale().steps[0]/2;for(var b=this.getScale().minXOnScale;b<d;b+=this.getScale().steps[0]){var c=this.toPixelX(b);this.g2d.drawLine(a,
c,this.yPixel0,c,this.yPixel1)}}else{d=1.0001*this.getScale().maxXOnScale;for(b=this.getScale().firstX;b<=d;b+=this.getScale().steps[0])c=this.toPixelX(b),this.g2d.drawLine(a,c,this.yPixel0,c,this.yPixel1)}for(b=this.getScale().firstY;b<this.getScale().maxYOnScale+this.getScale().steps[1]/2;b+=this.getScale().steps[1])d=this.toPixelY(b),d==this.fixY(d)&&this.g2d.drawLine(a,this.xPixel0,d,this.xPixel1,d)}},"~O");c(b,"drawXScale",function(a,d){this.setColorFromToken(a,JSV.common.ScriptToken.SCALECOLOR);
this.pd.isPrinting&&this.g2d.drawLine(a,d.getXPixel0(),this.yPixel1,d.getXPixel0()+d.getXPixels()-1,this.yPixel1);for(var b=this.getScale().precision[0],c=this.pd.setFont(a,d.getXPixels(),0,this.pd.isPrinting?10:12,!1),f=this.yPixel1,g=this.yPixel1+4*this.pd.scalingFactor,e=this.yPixel1+2*this.pd.scalingFactor,c=c.getHeight(),l=d.toPixelX(this.getScale().steps[0])-d.toPixelX(0),m=Math.abs(0.95*l),x=this.getScale().firstX-this.getScale().steps[0],p=1.0001*(this.getScale().maxXOnScale+this.getScale().steps[0]),
n=0;2>n;n++){1==n&&JSV.common.ScaleData.fixScale(this.mapX);for(var q=1E10,j=x;j<=p;j+=this.getScale().steps[0]){var l=d.toPixelX(j),r=Double.$valueOf(j),s;switch(n){case 0:s=JU.DF.formatDecimalDbl(j,b);this.mapX.put(r,s);this.drawTick(a,l,f,g,d);l=Math.abs(q-j);q=this.getScale().minorTickCounts[0];if(0!=q){l/=q;for(s=1;s<q;s++)this.drawTick(a,d.toPixelX(j-s*l),f,e,d)}q=j;continue;case 1:s=this.mapX.get(r);if(null==s||l!=d.fixX(l))continue;var r=this.pd.getStringWidth(s),u=l+w(r/2)==d.fixX(l+w(r/
2))?2:0;0<u&&this.g2d.drawString(a,s,l-w(r/u),g+c);j+=Math.floor(r/m)*this.getScale().steps[0]}}}this.mapX.clear()},"~O,JSV.common.XYScaleConverter");c(b,"drawTick",function(a,d,b,c,f){d==f.fixX(d)&&this.g2d.drawLine(a,d,b,d,c)},"~O,~N,~N,~N,JSV.common.XYScaleConverter");c(b,"drawYScale",function(a,d){var b=d.getScale(),c=b.precision[1],f=this.pd.setFont(a,d.getXPixels(),0,this.pd.isPrinting?10:12,!1).getHeight(),g=b.maxYOnScale+b.steps[1]/2,e=-2147483648;this.setColorFromToken(a,JSV.common.ScriptToken.SCALECOLOR);
for(var l=0;2>l;l++){1==l&&JSV.common.ScaleData.fixScale(this.mapX);for(var m=b.firstY;m<g;m+=b.steps[1]){var x=Double.$valueOf(m),n=d.getXPixel0(),p=d.toPixelY(m);if(p==d.fixY(p)){var j;0==l&&this.g2d.drawLine(a,n,p,n-3*this.pd.scalingFactor,p);if(!(Math.abs(p-e)<=f))switch(e=p,l){case 0:j=JU.DF.formatDecimalDbl(m,c);this.mapX.put(x,j);break;case 1:j=this.mapX.get(x);if(null==j)continue;j.startsWith("0")&&j.contains("E")&&(j="0");this.g2d.drawString(a,j,n-4*this.pd.scalingFactor-this.pd.getStringWidth(j),
p+w(f/3))}}}}this.mapX.clear()},"~O,JSV.common.XYScaleConverter");c(b,"drawXUnits",function(a){var d=this.spectra.get(0).getAxisLabel(!0);null!=d&&this.drawUnits(a,d,this.xPixel1+25*this.pd.scalingFactor,this.yPixel1+5*this.pd.scalingFactor,1,1)},"~O");c(b,"drawUnits",function(a,d,b,c,f,g){this.setColorFromToken(a,JSV.common.ScriptToken.UNITSCOLOR);this.pd.setFont(a,(null==this.imageView?this:this.imageView).getXPixels(),3,10,!1);this.g2d.drawString(a,d,w(b-this.pd.getStringWidth(d)*f),w(c+this.pd.getFontHeight()*
g))},"~O,~S,~N,~N,~N,~N");c(b,"drawYUnits",function(a){var d=this.spectra.get(0).getAxisLabel(!1);""===d&&(d="ARBITRARY UNITS");null!=d&&!this.pd.unitsDrawn&&this.drawUnits(a,d,(this.pd.isPrinting?30:5)*this.pd.scalingFactor,this.yPixel0+(this.pd.isPrinting?0:5)*this.pd.scalingFactor,0,-1);this.pd.unitsDrawn=!0},"~O");c(b,"drawHighlightsAndPeakTabs",function(a,d,b){var c=this.getMeasurements(JSV.common.Annotation.AType.PeakList,b),f=this.spectra.get(b);if(this.isPrintingOrSaving)null!=c&&(this.setColorFromToken(a,
JSV.common.ScriptToken.PEAKTABCOLOR),this.printPeakList(a,f,c));else{if(null==c){for(var g=0;g<this.highlights.size();g++){var e=this.highlights.get(g);e.spectrum===f&&(this.pd.setHighlightColor(e.color),this.drawBar(d,null,e.x1,e.x2,JSV.common.ScriptToken.HIGHLIGHTCOLOR,0))}this.pd.peakTabsOn&&this.drawPeakTabs(a,d,f)}if(null!=c){d=f.isInverted()?this.yPixel1-10*this.pd.scalingFactor:this.yPixel0;this.setColorFromToken(a,JSV.common.ScriptToken.PEAKTABCOLOR);for(g=c.size();0<=--g;)f=c.get(g),f=this.toPixelX(f.getXVal()),
this.g2d.drawLine(a,f,d,f,d+10*this.pd.scalingFactor);this.isVisible(this.getDialog(JSV.common.Annotation.AType.PeakList,b))&&(d=this.toPixelY(c.getThresh()),d==this.fixY(d)&&!this.pd.isPrinting&&this.g2d.drawLine(a,this.xPixel0,d,this.xPixel1,d))}}},"~O,~O,~N");c(b,"printPeakList",function(a,d,b){var c=b.getMeasurementListArray(null);if(0!=c.length){this.pd.setFont(a,this.xPixels,0,8,!1);for(var f=this.pd.getFontHeight(),g=F(b.size(),0),e=F(b.size(),0),l=0,m=5*this.pd.scalingFactor,x=10*this.pd.scalingFactor,
p=15*this.pd.scalingFactor,n=25*this.pd.scalingFactor,j=0;j<c.length;j++)e[j]=this.toPixelX(Double.parseDouble(c[j][1])),0==j?g[j]=e[j]:(g[j]=Math.max(g[j-1]+f,e[j]+f),l+=g[j]-e[j]);l/=2*c.length;g[0]-l<this.xPixel0+n&&(l=g[0]-(this.xPixel0+n));for(j=0;j<c.length;j++)g[j]-=l;j=d.isInverted();d=this.pd.getStringWidth("99.9999");for(var l=6<=c[0].length?this.pd.getStringWidth("99.99"):0,n=j?-1:1,q=(j?this.yPixel1:this.yPixel0)+n*(l+d+p),j=0;j<c.length;j++)this.g2d.drawLine(a,g[j],q,g[j],q+m*n),this.g2d.drawLine(a,
g[j],q+m*n,e[j],q+x*n),this.g2d.drawLine(a,e[j],q+x*n,e[j],q+p*n),0<l&&0<c[j][4].length&&this.g2d.drawLine(a,w((g[j]+g[j-1])/2),q-d+m,w((g[j]+g[j-1])/2),q-d-m);q-=2*n*this.pd.scalingFactor;0<l&&(this.drawStringRotated(a,-90,g[0]-p,q,"  ppm"),this.drawStringRotated(a,-90,g[0]-p,q-d-m," Hz"));for(j=b.size();0<=--j;)this.drawStringRotated(a,-90*n,g[j]+w(n*f/3),q,c[j][1]),0<l&&0<c[j][4].length&&(b=w((g[j]+g[j-1])/2)+w(f/3),this.drawStringRotated(a,-90,b,q-d-m,c[j][4]))}},"~O,JSV.common.Spectrum,JSV.common.PeakData");
c(b,"drawStringRotated",function(a,d,b,c,f){this.g2d.drawStringRotated(a,f,b,c,d)},"~O,~N,~N,~N,~S");c(b,"drawAnnotations",function(a,d,b){this.pd.setFont(a,this.xPixels,1,18,!1);for(var c=d.size();0<=--c;){var f=d.get(c);this.setAnnotationColor(a,f,b);var g=(f.is2D?this.imageView:this).toPixelX(f.getXVal()),e=f.isPixels()?w(this.yPixel0+10+10*this.pd.scalingFactor-f.getYVal()):f.is2D?this.imageView.subIndexToPixelY(w(f.getYVal())):this.toPixelY(f.getYVal());this.g2d.drawString(a,f.text,g+f.offsetX*
this.pd.scalingFactor,e-f.offsetY*this.pd.scalingFactor)}},"~O,JU.Lst,JSV.common.ScriptToken");c(b,"drawIntegralValues",function(a,d,b){var c=this.getMeasurements(JSV.common.Annotation.AType.Integration,d);if(null!=c){this.pd.isPrinting?this.pd.setFont(a,this.xPixels,0,8,!1):this.pd.setFont(a,this.xPixels,1,12,!1);this.setColorFromToken(a,JSV.common.ScriptToken.INTEGRALPLOTCOLOR);var f=this.pd.getFontHeight();this.g2d.setStrokeBold(a,!0);for(var g=c.size();0<=--g;){var e=c.get(g);if(0!=e.getValue()){var l=
this.toPixelX(e.getXVal2()),m=b*this.pd.scalingFactor+this.toPixelYint(e.getYVal()),j=b*this.pd.scalingFactor+this.toPixelYint(e.getYVal2());l!=this.fixX(l)||(m!=this.fixY(m)||j!=this.fixY(j))||(this.pd.isPrinting||this.g2d.drawLine(a,l,m,l,j),this.g2d.drawString(a,"  "+e.text,l,w((m+j)/2)+w(f/3)))}}this.g2d.setStrokeBold(a,!1)}d==this.getFixedSelectedSpectrumIndex()&&(this.selectedSpectrumIntegrals=c)},"~O,~N,~N");c(b,"drawMeasurements",function(a,d){var b=this.getMeasurements(JSV.common.Annotation.AType.Measurements,
d);if(null!=b)for(var c=b.size();0<=--c;)this.drawMeasurement(a,b.get(c));d==this.getFixedSelectedSpectrumIndex()&&(this.selectedSpectrumMeasurements=b)},"~O,~N");c(b,"drawMeasurement",function(a,d){if(!(0==d.text.length&&d!==this.pendingMeasurement)){this.pd.setFont(a,this.xPixels,1,12,!1);this.g2d.setGraphicsColor(a,d===this.pendingMeasurement?this.pd.getColor(JSV.common.ScriptToken.PEAKTABCOLOR):this.pd.BLACK);var b=this.toPixelX(d.getXVal()),c=this.toPixelY(d.getYVal()),f=this.toPixelX(d.getXVal2());
if(!Double.isNaN(d.getXVal())&&!(b!=this.fixX(b)||f!=this.fixX(f))){var g=2<=Math.abs(b-f),e=this.getScale().isYZeroOnScale()&&d.spec.isHNMR(),l=w((b+f)/2);this.g2d.setStrokeBold(a,!0);g&&this.g2d.drawLine(a,b,c,f,c);e&&this.g2d.drawLine(a,b+1,this.yPixel1-1,f,this.yPixel1-1);this.g2d.setStrokeBold(a,!1);g&&this.g2d.drawString(a,d.text,l+d.offsetX,c-d.offsetY);e&&(this.g2d.drawLine(a,b,this.yPixel1,b,this.yPixel1-6*this.pd.scalingFactor),this.g2d.drawLine(a,f,this.yPixel1,f,this.yPixel1-6*this.pd.scalingFactor))}}},
"~O,JSV.common.Measurement");c(b,"getPinSelected",function(a,d){if(null!=this.widgets)for(var b=0;b<this.widgets.length;b++)if(null!=this.widgets[b]&&this.widgets[b].isPinOrCursor&&this.widgets[b].selected(a,d))return this.widgets[b];return null},"~N,~N");c(b,"set2DCrossHairs",function(a,d){var b;if(a==this.imageView.fixX(a)&&d==this.fixY(d)&&(this.pin1Dx1.setX(b=this.imageView.toX(a),this.toPixelX(b)),this.cur2Dx1.setX(b,a),this.setCurrentSubSpectrum(this.imageView.toSubspectrumIndex(d)),this.isLinked)){var c=
this.imageView.toY(d);this.pd.set2DCrossHairsLinked(this,b,c,!this.sticky2Dcursor)}},"~N,~N");c(b,"reset2D",function(a){a?(this.imageView.setView0(this.imageView.xPixel0,this.pin2Dy0.yPixel0,this.imageView.xPixel1,this.pin2Dy1.yPixel0),this.doZoom(0,this.getScale().minY,0,this.getScale().maxY,!0,!1,!1,!1,!0)):this.imageView.setView0(this.pin2Dx0.xPixel0,this.imageView.yPixel0,this.pin2Dx1.xPixel0,this.imageView.yPixel1)},"~B");c(b,"setAnnotationText",function(a){var d=this.pd.getInput("New text?",
"Set Label",a.text);if(null==d)return!1;0==d.length?this.annotations.removeObj(a):a.text=d;return!0},"JSV.common.Annotation");c(b,"checkIntegral",function(a,d,b){var c=this.getDialog(JSV.common.Annotation.AType.Integration,-1);if(null==c)return!1;a=c.getData().addIntegralRegion(a,d);b&&JSV.common.GraphSet.isDialog(c)&&c.update(null,0,0);if(Double.isNaN(d))return!1;this.pendingIntegral=b?null:a;this.pd.isIntegralDrag=!b;this.selectedSpectrumIntegrals=null;return!0},"~N,~N,~B");c(b,"setToolTipForPixels",
function(a,b){if(this.iSpectrumMovedTo!=this.iSpectrumClicked||this.pd.getCurrentGraphSet()!==this)this.pd.setToolTipText("click spectrum to activate");else if(this.isSplitWidget(a,b))this.pd.setToolTipText("click to "+(1<this.nSplit?"combine":"split"));else if(this.isCloserWidget(a,b))this.pd.setToolTipText("click to close");else{var c=this.getPinSelected(a,b),k=this.getScale().precision[0],f=this.getScale().precision[1];if(null!=c)this.setStartupPinTip()||(c===this.pin1Dx01||c===this.pin2Dx01?k=
JU.DF.formatDecimalDbl(Math.min(this.pin1Dx0.getXVal(),this.pin1Dx1.getXVal()),k)+" - "+JU.DF.formatDecimalDbl(Math.max(this.pin1Dx0.getXVal(),this.pin1Dx1.getXVal()),k):c===this.pin1Dy01?k=JU.DF.formatDecimalDbl(Math.min(this.pin1Dy0.getYVal(),this.pin1Dy1.getYVal()),f)+" - "+JU.DF.formatDecimalDbl(Math.max(this.pin1Dy0.getYVal(),this.pin1Dy1.getYVal()),f):c===this.cur2Dy?(c=this.imageView.toSubspectrumIndex(c.yPixel0),k=this.get2DYLabel(c,k)):k=c===this.pin2Dy01?""+w(Math.min(this.pin2Dy0.getYVal(),
this.pin2Dy1.getYVal()))+" - "+w(Math.max(this.pin2Dy0.getYVal(),this.pin2Dy1.getYVal())):c.isXtype?JU.DF.formatDecimalDbl(c.getXVal(),k):c.is2D?""+w(c.getYVal()):JU.DF.formatDecimalDbl(c.getYVal(),f),this.pd.setToolTipText(k));else{if(null!=this.imageView){if(this.imageView.fixX(a)==a&&this.fixY(b)==b){c=this.imageView.toSubspectrumIndex(b);k="y="+this.get2DYLabel(c,k)+" / x="+JU.DF.formatDecimalDbl(this.imageView.toX(a),k)+" "+this.getSpectrum().getAxisLabel(!0);this.pd.setToolTipText(k);this.pd.coordStr=
k;return}if(!this.pd.display1D){this.pd.setToolTipText("");this.pd.coordStr="";return}}var c=this.toX(this.fixX(a)),k=null!=this.imageView&&this.imageView.isXWithinRange(a)?this.imageView.toSubspectrumIndex(this.fixY(b)):this.toY(this.fixY(b)),f=this.setCoordStr(c,k),g=this.getFixedSelectedSpectrumIndex();this.isInPlotRegion(a,b)?1!=this.nSpectra&&this.haveIntegralDisplayed(g)&&(k=this.getIntegrationGraph(g).getPercentYValueAt(c),f+=", "+JU.DF.formatDecimalDbl(k,1)):k=NaN;this.pd.setToolTipText(null!=
this.selectedIntegral?"click to set value":null!=this.pendingMeasurement||null!=this.selectedMeasurement?this.pd.hasFocus()?"Press ESC to delete "+(null!=this.selectedIntegral?"integral, DEL to delete all visible, or N to normalize":null==this.pendingMeasurement?'"'+this.selectedMeasurement.text+'" or DEL to delete all visible':"measurement"):"":Double.isNaN(k)?null:f)}}},"~N,~N");c(b,"isFrameBox",function(a,b,c,k){return 5>Math.abs(a-(c+5))&&5>Math.abs(b-(k+5))},"~N,~N,~N,~N");c(b,"setCoordStr",
function(a,b){var c=JU.DF.formatDecimalDbl(a,this.getScale().precision[0]);this.pd.coordStr="("+c+(this.haveSingleYScale||0<=this.iSpectrumSelected?", "+JU.DF.formatDecimalDbl(b,this.getScale().precision[1]):"")+")";return c},"~N,~N");c(b,"setStartupPinTip",function(){if(null==this.pd.startupPinTip)return!1;this.pd.setToolTipText(this.pd.startupPinTip);this.pd.startupPinTip=null;return!0});c(b,"get2DYLabel",function(a,b){var c=this.getSpectrumAt(0).getSubSpectra().get(a);return JU.DF.formatDecimalDbl(c.getY2DPPM(),
b)+" PPM"+(c.y2DUnits.equals("HZ")?" ("+JU.DF.formatDecimalDbl(c.getY2D(),b)+" HZ) ":"")},"~N,~N");c(b,"isOnSpectrum",function(a,b,c){var k=null,f=!0,g=0>c;if(g){k=this.getDialog(JSV.common.Annotation.AType.Integration,-1);if(null==k)return!1;k=k.getData().getXYCoords();c=this.getFixedSelectedSpectrumIndex()}else{this.setScale(c);var e=this.spectra.get(c),k=e.xyCoords,f=e.isContinuous()}var e=c*I(this.yPixels*(this.yStackOffsetPercent/100)),l=this.viewData.getStartingPointIndex(c);c=this.viewData.getEndingPointIndex(c);
if(f)for(f=l;f<c;f++){var m=k[f],j=k[f+1],l=this.toPixelX(m.getXVal()),n=this.toPixelX(j.getXVal()),m=g?this.toPixelYint(m.getYVal()):this.toPixelY(m.getYVal()),j=g?this.toPixelYint(j.getYVal()):this.toPixelY(j.getYVal());if(!(-2147483648==m||-2147483648==j))if(m=this.fixY(m)-e,j=this.fixY(j)-e,JSV.common.GraphSet.isOnLine(a,b,l,m,n,j))return!0}else for(f=l;f<=c;f++)if(g=k[f],j=this.toPixelY(g.getYVal()),-2147483648!=j&&(l=this.toPixelX(g.getXVal()),m=this.toPixelY(Math.max(this.getScale().minYOnScale,
0)),m=this.fixY(m),j=this.fixY(j),!(m==j&&(m==this.yPixel0||m==this.yPixel1))&&JSV.common.GraphSet.isOnLine(a,b,l,m,l,j)))return!0;return!1},"~N,~N,~N");b.distance=c(b,"distance",function(a,b){return Math.sqrt(a*a+b*b)},"~N,~N");b.findCompatibleGraphSet=c(b,"findCompatibleGraphSet",function(a,b){for(var c=0;c<a.size();c++)if(JSV.common.Spectrum.areXScalesCompatible(b,a.get(c).getSpectrum(),!1,!1))return a.get(c);return null},"JU.Lst,JSV.common.Spectrum");b.isGoodEvent=c(b,"isGoodEvent",function(a,
b,c){return null==b?5<Math.abs(a.xPixel1-a.xPixel0)&&5<Math.abs(a.yPixel1-a.yPixel0):c?5<Math.abs(a.xPixel0-b.xPixel0):5<Math.abs(a.yPixel0-b.yPixel0)},"JSV.common.PlotWidget,JSV.common.PlotWidget,~B");b.isOnLine=c(b,"isOnLine",function(a,b,c,k,f,g){var e=Math.abs(c-a);if(2>e&&2>Math.abs(k-b))return!0;var l=f-a;if(2>Math.abs(l)&&2>Math.abs(g-b))return!0;var m=k-g;if(2<Math.abs(m)&&k<b==g<b)return!1;var j=c-f;return 2<Math.abs(j)&&c<a==f<a?!1:JSV.common.GraphSet.distance(e,k-b)+JSV.common.GraphSet.distance(l,
b-g)<JSV.common.GraphSet.distance(j,m)+2},"~N,~N,~N,~N,~N,~N");b.setFractionalPositions=c(b,"setFractionalPositions",function(a,b,c){var k=b.size(),f=0,g=0;a.isLinked=c!==JSV.common.PanelData.LinkMode.NONE;if(c===JSV.common.PanelData.LinkMode.NONE){for(var e=0;e<k;e++)c=b.get(e),f+=(c.getSpectrumAt(0).is1D(),1)*c.nSplit;f=1/f;for(e=0;e<k;e++)c=b.get(e),c.isLinked=!1,a=c.getSpectrumAt(0).is1D()?f:1*f,c.fX0=0,c.fY0=g,c.fracX=1,c.fracY=a,g+=a*c.nSplit}else{var f=null,l=-1;if(2==k||3==k)for(e=0;e<k;e++)if(c=
b.get(e),!c.getSpectrum().is1D()){f=c;0<=l&&(e=-2);l=e;break}if(-2==l||-1==l&&2!=k)JSV.common.GraphSet.setFractionalPositions(a,b,JSV.common.PanelData.LinkMode.NONE);else for(e=0;e<k;e++)c=b.get(e),c.isLinked=!0,a=c.getSpectrumAt(0),a.is1D()?(null!=f&&(l=f.getSpectrumAt(0),JSV.common.Spectrum.areLinkableX(a,l)&&(c.gs2dLinkedX=f),JSV.common.Spectrum.areLinkableY(a,l)&&(c.gs2dLinkedY=f)),c.fX0=0,c.fY0=g,c.fracX=null==f?1:0.5,c.fracY=3==k||null==f?0.5:1,g+=0.5):(c.fX0=0.5,c.fY0=0,c.fracX=0.5,c.fracY=
1)}},"JSV.common.PanelData,JU.Lst,JSV.common.PanelData.LinkMode");c(b,"addAnnotation",function(a,b){if(0==a.size()||1==a.size()&&a.get(0).equalsIgnoreCase("none"))return this.lastAnnotation=this.annotations=null;4>a.size()&&null==this.lastAnnotation&&(this.lastAnnotation=this.getAnnotation((this.getScale().maxXOnScale+this.getScale().minXOnScale)/2,(this.getScale().maxYOnScale+this.getScale().minYOnScale)/2,b,!1,!1,0,0));var c=this.getAnnotation(a,this.lastAnnotation);if(null==c)return null;if(null==
this.annotations&&1==a.size()&&'"'==a.get(0).charAt(0))return c=c.text,this.getSpectrum().setTitle(c),c;this.lastAnnotation=c;this.addAnnotation(c,!1);return null},"JU.Lst,~S");c(b,"addHighlight",function(a,b,c,k){null==c&&(c=this.getSpectrumAt(0));a=G(JSV.common.GraphSet.Highlight,this,null,a,b,c,null==k?this.pd.getColor(JSV.common.ScriptToken.HIGHLIGHTCOLOR):k);this.highlights.contains(a)||this.highlights.addLast(a)},"~N,~N,JSV.common.Spectrum,javajs.api.GenericColor");c(b,"addPeakHighlight",function(a){for(var b=
this.spectra.size();0<=--b;){var c=this.spectra.get(b);this.removeAllHighlights(c);if(!(null==a||a.isClearAll()||c!==a.spectrum)){var k=a.toString();if(null!=k){var f=JU.PT.getQuotedAttribute(k,"xMin"),k=JU.PT.getQuotedAttribute(k,"xMax");if(null==f||null==k)break;f=JU.PT.parseFloat(f);k=JU.PT.parseFloat(k);if(Float.isNaN(f)||Float.isNaN(k))break;this.pd.addHighlight(this,f,k,c,200,140,140,100);c.setSelectedPeak(a);!this.getScale().isInRangeX(f)&&!(this.getScale().isInRangeX(k)||f<this.getScale().minX&&
this.getScale().maxX<k)&&this.setZoomTo(0)}}}},"JSV.common.PeakInfo");c(b,"advanceSubSpectrum",function(a){var b=this.getSpectrumAt(0);a=b.advanceSubSpectrum(a);b.isForcedSubset()&&this.viewData.setXRangeForSubSpectrum(this.getSpectrum().getXYCoords());this.pd.notifySubSpectrumChange(a,this.getSpectrum())},"~N");c(b,"checkSpectrumClickedEvent",function(a,b,c){if(null!=this.nextClickForSetPeak||(1<c||null!=this.pendingMeasurement||!this.isInPlotRegion(a,b))||0==c&&(c=this.isOnSpectrum(a,b,-1),this.pd.integralShiftMode=
c?this.getShiftMode(a,b):0,this.pd.isIntegralDrag=0==this.pd.integralShiftMode&&(c||this.haveIntegralDisplayed(-1)&&null!=this.findMeasurement(this.getIntegrationGraph(-1),a,b,0)),0!=this.pd.integralShiftMode)||!this.showAllStacked)return!1;this.stackSelected=!1;for(c=0;c<this.nSpectra;c++)if(this.isOnSpectrum(a,b,c))return this.setSpectrumClicked(this.iPreviousSpectrumClicked=c),!1;if(this.isDialogOpen())return!1;this.setSpectrumClicked(-1);return this.stackSelected=!1},"~N,~N,~N");c(b,"getShiftMode",
function(a,b){return this.isStartEndIntegral(a,!1)?b:this.isStartEndIntegral(a,!0)?-b:0},"~N,~N");c(b,"isDialogOpen",function(){return this.isVisible(this.getDialog(JSV.common.Annotation.AType.Integration,-1))||this.isVisible(this.getDialog(JSV.common.Annotation.AType.Measurements,-1))||this.isVisible(this.getDialog(JSV.common.Annotation.AType.PeakList,-1))});c(b,"isStartEndIntegral",function(a,b){return b?20>this.xPixelPlot1-a:20>a-this.xPixelPlot0},"~N,~B");c(b,"checkWidgetEvent",function(a,b,c){if(!this.widgetsAreSet)return!1;
this.widgetsAreSet=!1;if(c){if(2==this.pd.clickCount&&this.lastIntDragX!=a&&!this.is2dClick(a,b)){if(null==this.pendingMeasurement)return-1==this.iSpectrumClicked&&0<=this.iPreviousSpectrumClicked&&this.setSpectrumClicked(this.iPreviousSpectrumClicked),this.processPendingMeasurement(a,b,2),!0}else if(!this.is2dClick(a,b)&&(this.isOnSpectrum(a,b,-1)&&this.checkIntegral(this.toX(a),NaN,!1),this.lastIntDragX==a&&(this.pd.isIntegralDrag=!0,!this.checkIntegral(this.toX(a),this.toX(a),!1))))return!1;if(null!=
this.pendingMeasurement)return!0;c=this.getPinSelected(a,b);null==c&&(b=this.fixY(b),a<this.xPixel1?(this.pd.shiftPressed&&this.setSpectrumClicked(this.iPreviousSpectrumClicked),a=this.fixX(a),null==this.zoomBox1D&&this.newPins(),this.zoomBox1D.setX(this.toX(a),a),this.zoomBox1D.yPixel0=b,c=this.zoomBox1D):null!=this.imageView&&a<this.imageView.xPixel1&&(this.zoomBox2D.setX(this.imageView.toX(a),this.imageView.fixX(a)),this.zoomBox2D.yPixel0=b,c=this.zoomBox2D));this.pd.thisWidget=c;return!1}this.nextClickForSetPeak=
null;c=this.pd.thisWidget;if(null==c)return!1;if(c===this.zoomBox1D)return this.zoomBox1D.xPixel1=this.fixX(a),this.zoomBox1D.yPixel1=this.fixY(b),this.pd.isIntegralDrag&&this.zoomBox1D.xPixel0!=this.zoomBox1D.xPixel1&&(this.lastIntDragX<=a!=this.zoomBox1D.xPixel0<=a&&(this.zoomBox1D.xPixel0=this.lastIntDragX,this.zoomBox1D.xPixel1=a,this.zoomBox1D.setXVal(this.toX(this.zoomBox1D.xPixel0))),this.lastIntDragX=a,this.checkIntegral(this.zoomBox1D.getXVal(),this.toX(this.zoomBox1D.xPixel1),!1)),!1;if(!this.zoomEnabled)return!1;
if(c===this.zoomBox2D)return this.zoomBox2D.xPixel1=this.imageView.fixX(a),this.zoomBox2D.yPixel1=this.fixY(b),!0;if(c===this.cur2Dy)return b=this.fixY(b),this.cur2Dy.yPixel0=this.cur2Dy.yPixel1=b,this.setCurrentSubSpectrum(this.imageView.toSubspectrumIndex(b)),!0;if(c===this.cur2Dx0||c===this.cur2Dx1)return!1;if(c===this.pin1Dx0||c===this.pin1Dx1||c===this.pin1Dx01){a=this.fixX(a);c.setX(this.toX0(a),a);if(c===this.pin1Dx01){c=a-w((this.pin1Dx0.xPixel0+this.pin1Dx1.xPixel0)/2);a=this.pin1Dx0.xPixel0+
c;b=this.pin1Dx1.xPixel0+c;if(0==c||this.fixX(a)!=a||this.fixX(b)!=b)return!0;this.pin1Dx0.setX(this.toX0(a),a);this.pin1Dx1.setX(this.toX0(b),b)}this.doZoom(this.pin1Dx0.getXVal(),0,this.pin1Dx1.getXVal(),0,!0,!1,!1,!0,!1);return!0}if(c===this.pin1Dy0||c===this.pin1Dy1||c===this.pin1Dy01){b=this.fixY(b);c.setY(this.toY0(b),b);if(c===this.pin1Dy01){c=b-w((this.pin1Dy0.yPixel0+this.pin1Dy1.yPixel0)/2)+1;b=this.pin1Dy0.yPixel0+c;a=this.pin1Dy1.yPixel0+c;c=this.toY0(b);var k=this.toY0(a);if(Math.min(c,
k)==this.getScale().minY||Math.max(c,k)==this.getScale().maxY)return!0;this.pin1Dy0.setY(c,b);this.pin1Dy1.setY(k,a)}this.doZoom(0,this.pin1Dy0.getYVal(),0,this.pin1Dy1.getYVal(),null==this.imageView,null==this.imageView,!1,!1,!1);return!0}if(c===this.pin2Dx0||c===this.pin2Dx1||c===this.pin2Dx01){a=this.imageView.fixX(a);c.setX(this.imageView.toX0(a),a);if(c===this.pin2Dx01){c=a-w((this.pin2Dx0.xPixel0+this.pin2Dx1.xPixel0)/2)+1;a=this.pin2Dx0.xPixel0+c;b=this.pin2Dx1.xPixel0+c;if(this.imageView.fixX(a)!=
a||this.imageView.fixX(b)!=b)return!0;this.pin2Dx0.setX(this.imageView.toX0(a),a);this.pin2Dx1.setX(this.imageView.toX0(b),b)}if(!JSV.common.GraphSet.isGoodEvent(this.pin2Dx0,this.pin2Dx1,!0))return this.reset2D(!0),!0;this.imageView.setView0(this.pin2Dx0.xPixel0,this.pin2Dy0.yPixel0,this.pin2Dx1.xPixel0,this.pin2Dy1.yPixel0);this.doZoom(this.pin2Dx0.getXVal(),this.getScale().minY,this.pin2Dx1.getXVal(),this.getScale().maxY,!1,!1,!1,!0,!1);return!0}if(c===this.pin2Dy0||c===this.pin2Dy1||c===this.pin2Dy01){b=
this.fixY(b);c.setY(this.imageView.toSubspectrumIndex(b),b);if(c===this.pin2Dy01){c=b-w((this.pin2Dy0.yPixel0+this.pin2Dy1.yPixel0)/2)+1;b=this.pin2Dy0.yPixel0+c;a=this.pin2Dy1.yPixel0+c;if(b!=this.fixY(b)||a!=this.fixY(a))return!0;this.pin2Dy0.setY(this.imageView.toSubspectrumIndex(b),b);this.pin2Dy1.setY(this.imageView.toSubspectrumIndex(a),a)}if(!JSV.common.GraphSet.isGoodEvent(this.pin2Dy0,this.pin2Dy1,!1))return this.reset2D(!1),!0;this.imageView.setView0(this.pin2Dx0.xPixel0,this.pin2Dy0.yPixel0,
this.pin2Dx1.xPixel1,this.pin2Dy1.yPixel1);return!0}return!1},"~N,~N,~B");c(b,"clearIntegrals",function(){this.checkIntegral(NaN,0,!1)});c(b,"clearMeasurements",function(){this.removeDialog(this.getFixedSelectedSpectrumIndex(),JSV.common.Annotation.AType.Measurements)});b.createGraphSetsAndSetLinkMode=c(b,"createGraphSetsAndSetLinkMode",function(a,b,c,k,f,e){for(var D=new JU.Lst,l=0;l<c.size();l++){var m=c.get(l),j=e===JSV.common.PanelData.LinkMode.NONE?JSV.common.GraphSet.findCompatibleGraphSet(D,
m):null;null==j&&D.addLast(j=new JSV.common.GraphSet(b.getPanelData()));j.addSpec(m)}JSV.common.GraphSet.setFractionalPositions(a,D,e);for(l=D.size();0<=--l;)D.get(l).initGraphSet(k,f),JU.Logger.info("JSVGraphSet "+(l+1)+" nSpectra = "+D.get(l).nSpectra);return D},"JSV.common.PanelData,JSV.api.JSVPanel,JU.Lst,~N,~N,JSV.common.PanelData.LinkMode");c(b,"drawGraphSet",function(a,b,c,k,f,e,D,l,m,j,n,p){this.zoomEnabled=this.pd.getBoolean(JSV.common.ScriptToken.ENABLEZOOM);this.height=f*this.pd.scalingFactor;
this.width=k*this.pd.scalingFactor;this.left=e*this.pd.scalingFactor;this.right=D*this.pd.scalingFactor;this.top=l*this.pd.scalingFactor;this.bottom=m*this.pd.scalingFactor;this.$haveSelectedSpectrum=!1;this.selectedSpectrumMeasurements=this.selectedSpectrumIntegrals=null;this.isPrintingOrSaving=this.pd.isPrinting||this.pd.creatingImage;if(!this.isPrintingOrSaving&&null!=this.widgets)for(k=0;k<this.widgets.length;k++)null!=this.widgets[k]&&(this.widgets[k].isVisible=!1);for(k=0;k<this.nSplit;k++)this.drawAll(a,
b,c,k,j||1<this.nSplit,n,p);this.setPositionForFrame(1<this.nSplit?this.pd.currentSplitPoint:0)},"~O,~O,~O,~N,~N,~N,~N,~N,~N,~B,~B,~B");c(b,"escapeKeyPressed",function(a){null!=this.zoomBox1D&&(this.zoomBox1D.xPixel0=this.zoomBox1D.xPixel1=0);null!=this.zoomBox2D&&(this.zoomBox2D.xPixel0=this.zoomBox2D.xPixel1=0);this.inPlotMove&&(null!=this.pendingMeasurement?this.pendingMeasurement=null:(this.pendingMeasurement=this.pd.thisWidget=null,null!=this.selectedSpectrumMeasurements&&null!=this.selectedMeasurement&&
(a?this.selectedSpectrumMeasurements.clear(this.getScale().minXOnScale,this.getScale().maxXOnScale):this.selectedSpectrumMeasurements.removeObj(this.selectedMeasurement),this.selectedMeasurement=null,this.updateDialog(JSV.common.Annotation.AType.Measurements,-1)),null!=this.selectedSpectrumIntegrals&&null!=this.selectedIntegral&&(a?this.selectedSpectrumIntegrals.clear(this.getScale().minXOnScale,this.getScale().maxXOnScale):this.selectedSpectrumIntegrals.removeObj(this.selectedIntegral),this.selectedIntegral=
null,this.updateDialog(JSV.common.Annotation.AType.Integration,-1))))},"~B");b.findGraphSet=c(b,"findGraphSet",function(a,b,c){for(var k=a.size();0<=--k;)if(a.get(k).hasPoint(b,c))return a.get(k);return null},"JU.Lst,~N,~N");c(b,"findMatchingPeakInfo",function(a){for(var b=null,c=0;c<this.spectra.size()&&null==(b=this.spectra.get(c).findMatchingPeakInfo(a));c++);return b},"JSV.common.PeakInfo");c(b,"getCurrentSpectrumIndex",function(){return 1==this.nSpectra?0:this.iSpectrumSelected});c(b,"getSelectedIntegral",
function(){return this.selectedIntegral});c(b,"getShowAnnotation",function(a,b){var c=this.getDialog(a,b);return null!=c&&c.getState()},"JSV.common.Annotation.AType,~N");c(b,"hasFileLoaded",function(a){for(var b=this.spectra.size();0<=--b;)if(this.spectra.get(b).getFilePathForwardSlash().equals(a))return!0;return!1},"~S");c(b,"haveSelectedSpectrum",function(){return this.$haveSelectedSpectrum});c(b,"mouseClickedEvent",function(a,b,c,k){this.selectedIntegral=this.selectedMeasurement=null;var f=this.nextClickForSetPeak;
this.nextClickForSetPeak=null;if(!this.checkArrowUpDownClick(a,b)&&!this.checkArrowLeftRightClick(a,b))if(this.lastClickX=NaN,this.lastPixelX=2147483647,this.isSplitWidget(a,b))this.splitStack(1==this.nSplit);else if(this.isCloserWidget(a,b))this.pd.closeSpectrum();else{var e=this.getPinSelected(a,b);if(null!=e)this.setWidgetValueByUser(e);else if(e=this.is2dClick(a,b),2==c&&(-1==this.iSpectrumClicked&&0<=this.iPreviousSpectrumClicked)&&this.setSpectrumClicked(this.iPreviousSpectrumClicked),!e&&k)this.setSpectrumClicked(this.iPreviousSpectrumClicked),
null!=this.pendingMeasurement?this.processPendingMeasurement(a,b,-3):0<=this.iSpectrumClicked&&this.processPendingMeasurement(a,b,3);else if(this.lastXMax=NaN,2==c)e?(this.sticky2Dcursor&&this.addAnnotation(this.getAnnotation(this.imageView.toX(a),this.imageView.toSubspectrumIndex(b),this.pd.coordStr,!1,!0,5,5),!0),this.sticky2Dcursor=!0,this.set2DCrossHairs(a,b)):this.isInTopBar(a,b)?this.doZoom(this.toX0(this.xPixel0),0,this.toX0(this.xPixel1),0,!0,!1,!1,!0,!0):this.isInRightBar(a,b)?this.doZoom(this.getScale().minXOnScale,
this.viewList.get(0).getScale().minYOnScale,this.getScale().maxXOnScale,this.viewList.get(0).getScale().maxYOnScale,!0,!0,!1,!1,!1):this.isInTopBar2D(a,b)?this.reset2D(!0):this.isInRightBar2D(a,b)?this.reset2D(!1):null!=this.pendingMeasurement?this.processPendingMeasurement(a,b,-2):0<=this.iSpectrumClicked&&this.processPendingMeasurement(a,b,2);else if(e){if(null!=this.annotations&&(k=(new JSV.common.Coordinate).set(this.imageView.toX(a),this.imageView.toSubspectrumIndex(b)),k=this.findAnnotation2D(k),
null!=k&&this.setAnnotationText(k)))return;1==c&&(this.sticky2Dcursor=!1);this.set2DCrossHairs(a,b)}else{if(this.isInPlotRegion(a,b)){if(null!=this.selectedSpectrumIntegrals&&this.checkIntegralNormalizationClick(a,b))return;if(null!=this.pendingMeasurement){this.processPendingMeasurement(a,b,1);return}this.setCoordClicked(a,this.toX(a),this.toY(b));this.updateDialog(JSV.common.Annotation.AType.PeakList,-1);if(null!=f){this.nextClickForSetPeak=f;this.shiftSpectrum(4,NaN,NaN);this.nextClickForSetPeak=
null;return}}else this.setCoordClicked(0,NaN,0);this.pd.notifyPeakPickedListeners(null)}}},"~N,~N,~N,~B");c(b,"is2dClick",function(a,b){return null!=this.imageView&&a==this.imageView.fixX(a)&&b==this.fixY(b)},"~N,~N");c(b,"updateDialog",function(a,b){var c=this.getDialog(a,b);if(null!=c&&this.isVisible(c)){var k=this.toX(this.xPixel1)-this.toX(this.xPixel0),f=this.getSpectrum().isInverted()?this.yPixel1-this.pd.mouseY:this.pd.mouseY-this.yPixel0;c.update(this.pd.coordClicked,k,f)}},"JSV.common.Annotation.AType,~N");
c(b,"isVisible",function(a){return JSV.common.GraphSet.isDialog(a)&&a.isVisible()},"JSV.api.AnnotationData");c(b,"mousePressedEvent",function(a,b){this.checkWidgetEvent(a,b,!0)},"~N,~N,~N");c(b,"mouseReleasedEvent",function(a,b){if(null!=this.pendingMeasurement)2>Math.abs(this.toPixelX(this.pendingMeasurement.getXVal())-a)&&(this.pendingMeasurement=null),this.processPendingMeasurement(a,b,-2),this.setToolTipForPixels(a,b);else if(0!=this.pd.integralShiftMode)this.pd.integralShiftMode=0,this.zoomBox1D.xPixel1=
this.zoomBox1D.xPixel0;else{0<=this.iSpectrumMovedTo&&this.setScale(this.iSpectrumMovedTo);var c=this.pd.thisWidget;if(this.pd.isIntegralDrag)JSV.common.GraphSet.isGoodEvent(this.zoomBox1D,null,!0)&&this.checkIntegral(this.toX(this.zoomBox1D.xPixel0),this.toX(this.zoomBox1D.xPixel1),!0),this.zoomBox1D.xPixel1=this.zoomBox1D.xPixel0=0,this.pendingIntegral=null,this.pd.isIntegralDrag=!1;else if(c===this.zoomBox2D)JSV.common.GraphSet.isGoodEvent(this.zoomBox2D,null,!0)&&(this.imageView.setZoom(this.zoomBox2D.xPixel0,
this.zoomBox2D.yPixel0,this.zoomBox2D.xPixel1,this.zoomBox2D.yPixel1),this.zoomBox2D.xPixel1=this.zoomBox2D.xPixel0,this.doZoom(this.imageView.toX(this.imageView.xPixel0),this.getScale().minY,this.imageView.toX(this.imageView.xPixel0+this.imageView.xPixels-1),this.getScale().maxY,!1,!1,!1,!0,!0));else if(c===this.zoomBox1D){if(JSV.common.GraphSet.isGoodEvent(this.zoomBox1D,null,!0)){var c=this.zoomBox1D.xPixel1,k=this.pd.shiftPressed;this.doZoom(this.toX(this.zoomBox1D.xPixel0),k?this.toY(this.zoomBox1D.yPixel0):
0,this.toX(c),k?this.toY(this.zoomBox1D.yPixel1):0,!0,k,!0,!0,!0);this.zoomBox1D.xPixel1=this.zoomBox1D.xPixel0}}else(c===this.pin1Dx0||c===this.pin1Dx1||c===this.cur2Dx0||c===this.cur2Dx1)&&this.addCurrentZoom()}},"~N,~N");c(b,"mouseMovedEvent",function(a,b){if(2147483647==a)return this.iSpectrumMovedTo=-1,this.piMouseOver=null;if(1<this.nSpectra){var c=this.getSplitPoint(b);this.setPositionForFrame(c);this.setSpectrumMovedTo(1<this.nSplit?c:this.iSpectrumSelected);0<=this.iSpectrumMovedTo&&this.setScale(this.iSpectrumMovedTo)}else this.iSpectrumMovedTo=
this.iSpectrumSelected=0;this.inPlotMove=this.isInPlotRegion(a,b);this.setXPixelMovedTo(1.7976931348623157E308,1.7976931348623157E308,this.inPlotMove?a:-1,-1);this.inPlotMove&&(this.xValueMovedTo=this.toX(this.xPixelMovedTo),this.yValueMovedTo=this.getSpectrum().getYValueAt(this.xValueMovedTo));if(0!=this.pd.integralShiftMode){var c=this.getDialog(JSV.common.Annotation.AType.Integration,-1),k=c.getData().getXYCoords(),k=k[0<this.pd.integralShiftMode?k.length-1:0].getYVal();c.getData().shiftY(this.pd.integralShiftMode,
this.toPixelYint(k)+b-(0<this.pd.integralShiftMode?this.yPixelPlot1:this.yPixelPlot0),this.yPixel0,this.yPixels)}else this.pd.isIntegralDrag||(null!=this.pendingMeasurement?(this.processPendingMeasurement(a,b,0),this.setToolTipForPixels(a,b)):(this.selectedMeasurement=this.inPlotMove&&null!=this.selectedSpectrumMeasurements?this.findMeasurement(this.selectedSpectrumMeasurements,a,b,0):null,this.selectedIntegral=null,this.inPlotMove&&(null!=this.selectedSpectrumIntegrals&&null==this.selectedMeasurement)&&
(this.selectedIntegral=this.findMeasurement(this.selectedSpectrumIntegrals,a,b,0),null==this.selectedIntegral&&(this.selectedIntegral=this.findMeasurement(this.selectedSpectrumIntegrals,a,b,-5))),this.setToolTipForPixels(a,b),null==this.imageView?(this.piMouseOver=null,c=1<this.nSplit?this.iSpectrumMovedTo:this.iSpectrumClicked,!this.isDrawNoSpectra()&&0<=c&&(c=this.spectra.get(c),null!=c.getPeakList()&&(this.coordTemp.setXVal(this.toX(a)),this.coordTemp.setYVal(this.toY(b)),this.piMouseOver=c.findPeakByCoord(a,
this.coordTemp)))):!this.pd.display1D&&this.sticky2Dcursor&&this.set2DCrossHairs(a,b)));return this.piMouseOver},"~N,~N");c(b,"nextView",function(){this.currentZoomIndex+1<this.viewList.size()&&this.setZoomTo(this.currentZoomIndex+1)});c(b,"previousView",function(){0<this.currentZoomIndex&&this.setZoomTo(this.currentZoomIndex-1)});c(b,"resetView",function(){this.setZoomTo(0)});c(b,"removeAllHighlights",function(){this.removeAllHighlights(null)});c(b,"removeHighlight",function(a){this.highlights.removeItemAt(a)},
"~N");c(b,"removeHighlight",function(a,b){for(var c=this.highlights.size();0<=--c;){var k=this.highlights.get(c);k.x1==a&&k.x2==b&&this.highlights.removeItemAt(c)}},"~N,~N");c(b,"scaleYBy",function(a){if(null!=this.imageView||this.zoomEnabled)this.viewData.scaleSpectrum(null==this.imageView?this.iSpectrumSelected:-2,a),null!=this.imageView&&(this.update2dImage(!1),this.resetPinsFromView()),this.pd.refresh()},"~N");c(b,"selectSpectrum",function(a,b,c){for(var k=!1,f=this.spectra.size();0<=--f;)if((null==
a||this.getSpectrumAt(f).getFilePathForwardSlash().equals(a))&&this.getSpectrumAt(f).matchesPeakTypeModel(b,c))this.setSpectrumSelected(f),1<this.nSplit&&this.splitStack(!0),k=!0;1<this.nSpectra&&(!k&&0<=this.iSpectrumSelected&&!this.pd.isCurrentGraphSet(this))&&this.setSpectrumSelected(-2147483648);return k},"~S,~S,~S");c(b,"selectPeakByFileIndex",function(a,b,c){for(var k,f=this.spectra.size();0<=--f;)if(null!=(k=this.getSpectrumAt(f).selectPeakByFileIndex(a,b,c)))return k;return null},"~S,~S,~S");
c(b,"setSelected",function(a){0>a?(this.bsSelected.clearAll(),this.setSpectrumClicked(-1)):(this.bsSelected.set(a),this.setSpectrumClicked(1==this.bsSelected.cardinality()?a:-1),1<this.nSplit&&0<=a&&(this.pd.currentSplitPoint=a))},"~N");c(b,"setSelectedIntegral",function(a){var b=this.selectedIntegral.getSpectrum();this.getIntegrationGraph(this.getSpectrumIndex(b)).setSelectedIntegral(this.selectedIntegral,a)},"~N");c(b,"setShowAnnotation",function(a,b){var c=this.getDialog(a,-1);if(null==c)null!=
b&&b!==Boolean.TRUE||(a===JSV.common.Annotation.AType.PeakList||a===JSV.common.Annotation.AType.Integration||a===JSV.common.Annotation.AType.Measurements)&&this.pd.showDialog(a);else if(null==b)JSV.common.GraphSet.isDialog(c)?c.setVisible(!c.isVisible()):this.pd.showDialog(a);else{var k=b.booleanValue();k&&c.setState(k);(k||JSV.common.GraphSet.isDialog(c))&&this.pd.showDialog(a);!k&&JSV.common.GraphSet.isDialog(c)&&c.setVisible(!1)}},"JSV.common.Annotation.AType,Boolean");c(b,"checkIntegralParams",
function(a,b){if(!this.getSpectrum().canIntegrate()||this.reversePlot)return!1;var c=this.getFixedSelectedSpectrumIndex(),k=this.getDialog(JSV.common.Annotation.AType.Integration,-1);if(null==b)return!0;switch(JSV.common.IntegralData.IntMode.getMode(b.toUpperCase())){case JSV.common.IntegralData.IntMode.NA:return!1;case JSV.common.IntegralData.IntMode.CLEAR:this.integrate(c,null);this.integrate(c,a);break;case JSV.common.IntegralData.IntMode.ON:null==k?this.integrate(c,a):k.setState(!0);break;case JSV.common.IntegralData.IntMode.OFF:null!=
k&&k.setState(!1);break;case JSV.common.IntegralData.IntMode.TOGGLE:null==k?this.integrate(c,a):k.setState(!k.getState());break;case JSV.common.IntegralData.IntMode.AUTO:null==k&&(this.checkIntegralParams(a,"ON"),k=this.getDialog(JSV.common.Annotation.AType.Integration,-1));null!=k&&k.getData().autoIntegrate();break;case JSV.common.IntegralData.IntMode.LIST:this.pd.showDialog(JSV.common.Annotation.AType.Integration);break;case JSV.common.IntegralData.IntMode.MARK:null==k&&(this.checkIntegralParams(a,
"ON"),k=this.getDialog(JSV.common.Annotation.AType.Integration,-1));null!=k&&k.getData().addMarks(b.substring(4).trim());break;case JSV.common.IntegralData.IntMode.MIN:if(null!=k)try{var f=Double.parseDouble(JSV.common.ScriptToken.getTokens(b).get(1));k.getData().setMinimumIntegral(f)}catch(e){if(!y(e,Exception))throw e;}break;case JSV.common.IntegralData.IntMode.UPDATE:null!=k&&k.getData().update(a)}this.updateDialog(JSV.common.Annotation.AType.Integration,-1);return!0},"JSV.common.Parameters,~S");
c(b,"setSpectrum",function(a,b){b&&1<this.nSplit?1<this.nSplit&&this.setSpectrumClicked(a):(this.setSpectrumClicked(a),this.showAllStacked=this.stackSelected=!1);0<=a&&this.dialogsToFront(this.getSpectrum())},"~N,~B");c(b,"setSpectrumJDX",function(a){var b=this.getFixedSelectedSpectrumIndex();this.spectra.removeItemAt(b);this.spectra.add(b,a);this.pendingMeasurement=null;this.clearViews();this.viewData.newSpectrum(this.spectra)},"JSV.common.Spectrum");c(b,"setZoom",function(a,b,c,k){this.setZoomTo(0);
0==a&&0==c&&0==b&&0==k?(this.newPins(),this.imageView=null,this.getScale(),this.getScale()):this.doZoom(a,b,c,k,!0,b!=k,!1,!0,!0)},"~N,~N,~N,~N");c(b,"shiftSpectrum",function(a,b,c){var k=this.getSpectrum();if(!k.isNMR()||!k.is1D())return!1;var f=null,f=0;if(1.7976931348623157E308==c)f=-k.addSpecShift(0);else switch(a){case 3:f=c;break;case 1:case 2:this.nextClickMode=a;if(Double.isNaN(b))return f=this.pd.getInput("Click on "+(1==a?"or beside a peak to set its chemical shift":"the spectrum set the chemical shift at that point")+
(-2147483648==c?"":" to "+c)+".","Set Reference "+(1==a?"for Peak":"at Point"),"OK"),this.nextClickForSetPeak="OK".equals(f)?Double.$valueOf(c):null,!1;this.nextClickForSetPeak=null;case 4:null!=this.nextClickForSetPeak&&(c=this.nextClickForSetPeak.doubleValue(),this.nextClickForSetPeak=null);Double.isNaN(b)&&(b=this.lastClickX);1==this.nextClickMode&&(b=this.getNearestPeak(k,b,this.toY(this.pd.mouseY)));if(Double.isNaN(c))try{var e=this.pd.getInput("New chemical shift (set blank to reset)","Set Reference",
JU.DF.formatDecimalDbl(b,this.getScale().precision[0])).trim();c=0==e.length?b-k.addSpecShift(0):Double.parseDouble(e)}catch(D){if(y(D,Exception))return!1;throw D;}f=c-b}if(0==f)return!1;k.addSpecShift(f);if(null!=this.annotations)for(a=this.annotations.size();0<=--a;)this.annotations.get(a).spec===k&&this.annotations.get(a).addSpecShift(f);if(null!=this.dialogs){var l;for(a=this.dialogs.entrySet().iterator();a.hasNext()&&((l=a.next())||1);)l.getValue().getSpectrum()===k&&l.getValue().setSpecShift(f)}this.getScale().addSpecShift(f);
Double.isNaN(this.lastClickX)||(this.lastClickX+=f);this.updateDialogs();this.doZoom(0,this.getScale().minYOnScale,0,this.getScale().maxYOnScale,!0,!0,!1,!0,!1);this.pd.setTaintedAll();this.pd.repaint();return!0},"~N,~N,~N");c(b,"toPeak",function(a){a*=this.drawXAxisLeftToRight?1:-1;Double.isNaN(this.lastClickX)&&(this.lastClickX=this.lastPixelX=0);var b=this.getSpectrum(),c=this.setCoordClicked(this.lastPixelX,this.lastClickX,0);a=b.setNextPeak(c,a);0>a||(a=b.getPeakList().get(a),b.setSelectedPeak(a),
this.setCoordClicked(a.getXPixel(),a.getX(),0),this.pd.notifyPeakPickedListeners(new JSV.common.PeakPickEvent(this.jsvp,this.pd.coordClicked,a)))},"~N");c(b,"scaleSelectedBy",function(a){for(var b=this.bsSelected.nextSetBit(0);0<=b;b=this.bsSelected.nextSetBit(b+1))this.viewData.scaleSpectrum(b,a)},"~N");e(b,"toString",function(){return"gs: "+this.nSpectra+" "+this.spectra+" "+this.spectra.get(0).getFilePath()});c(b,"setXPointer",function(a,b){null!=a&&this.setSpectrumClicked(this.getSpectrumIndex(a));
this.xValueMovedTo=this.lastClickX=b;this.lastPixelX=this.toPixelX(b);this.setXPixelMovedTo(b,1.7976931348623157E308,0,0);this.yValueMovedTo=NaN},"JSV.common.Spectrum,~N");c(b,"setXPointer2",function(a,b){null!=a&&this.setSpectrumClicked(this.getSpectrumIndex(a));this.setXPixelMovedTo(1.7976931348623157E308,b,0,0)},"JSV.common.Spectrum,~N");c(b,"hasCurrentMeasurement",function(a){return null!=(a===JSV.common.Annotation.AType.Integration?this.selectedSpectrumIntegrals:this.selectedSpectrumMeasurements)},
"JSV.common.Annotation.AType");c(b,"getDialog",function(a,b){-1==b&&(b=this.getCurrentSpectrumIndex());return null==this.dialogs||0>b?null:this.dialogs.get(a+"_"+b)},"JSV.common.Annotation.AType,~N");c(b,"removeDialog",function(a,b){null!=this.dialogs&&0<=a&&this.dialogs.remove(b+"_"+a)},"~N,JSV.common.Annotation.AType");c(b,"addDialog",function(a,b,c){null==this.dialogs&&(this.dialogs=new java.util.Hashtable);a=b+"_"+a;c.setGraphSetKey(a);this.dialogs.put(a,c);return c},"~N,JSV.common.Annotation.AType,JSV.api.AnnotationData");
c(b,"removeDialog",function(a){var b=a.getGraphSetKey();this.dialogs.remove(b);a=a.getData();null!=a&&this.dialogs.put(b,a)},"JSV.dialog.JSVDialog");c(b,"getPeakListing",function(a,b,c){0>a&&(a=this.getCurrentSpectrumIndex());if(0>a)return null;var k=this.getDialog(JSV.common.Annotation.AType.PeakList,-1);if(null==k){if(!c)return null;this.addDialog(a,JSV.common.Annotation.AType.PeakList,k=new JSV.common.PeakData(JSV.common.Annotation.AType.PeakList,this.getSpectrum()))}k.getData().setPeakList(b,
-2147483648,this.viewData.getScale());JSV.common.GraphSet.isDialog(k)&&k.setFields();return k.getData()},"~N,JSV.common.Parameters,~B");c(b,"setPeakListing",function(a){var b=this.getDialog(JSV.common.Annotation.AType.PeakList,-1),c=JSV.common.GraphSet.isDialog(b)?b:null;(null==a?null==c||!c.isVisible():a.booleanValue())?this.pd.showDialog(JSV.common.Annotation.AType.PeakList):JSV.common.GraphSet.isDialog(b)&&b.setVisible(!1)},"Boolean");c(b,"haveIntegralDisplayed",function(a){a=this.getDialog(JSV.common.Annotation.AType.Integration,
a);return null!=a&&a.getState()},"~N");c(b,"getIntegrationGraph",function(a){a=this.getDialog(JSV.common.Annotation.AType.Integration,a);return null==a?null:a.getData()},"~N");c(b,"setIntegrationRatios",function(a){var b=this.getFixedSelectedSpectrumIndex();null==this.aIntegrationRatios&&(this.aIntegrationRatios=Array(this.nSpectra));this.aIntegrationRatios[b]=JSV.common.IntegralData.getIntegrationRatiosFromString(this.getSpectrum(),a)},"~S");c(b,"getIntegrationRatios",function(a){return null==this.aIntegrationRatios?
null:this.aIntegrationRatios[a]},"~N");c(b,"integrate",function(a,b){var c=this.getSpectrumAt(a);if(null==b||!c.canIntegrate())return this.removeDialog(a,JSV.common.Annotation.AType.Integration),!1;this.addDialog(a,JSV.common.Annotation.AType.Integration,new JSV.common.IntegralData(c,b));return!0},"~N,JSV.common.Parameters");c(b,"getIntegration",function(a,b,c){0>a&&(a=this.getCurrentSpectrumIndex());if(0>a)return null;var k=this.getDialog(JSV.common.Annotation.AType.Integration,-1);if(null==k){if(!c)return null;
k=this.addDialog(a,JSV.common.Annotation.AType.Integration,new JSV.common.IntegralData(this.getSpectrum(),b))}return k.getData()},"~N,JSV.common.Parameters,~B");c(b,"getMeasurementInfo",function(a,b){var c;switch(a){case JSV.common.Annotation.AType.PeakList:c=this.getPeakListing(b,null,!1);break;case JSV.common.Annotation.AType.Integration:c=this.getIntegration(b,null,!1);break;default:return null}if(null==c)return null;var k=new java.util.Hashtable;c.getInfo(k);return k},"JSV.common.Annotation.AType,~N");
c(b,"getInfo",function(a,b){var c=new java.util.Hashtable;if("".equals(a))c.put("KEYS","viewInfo spectra");else if("viewInfo".equalsIgnoreCase(a))return this.getScale().getInfo(c);var k=new JU.Lst;c.put("spectra",k);for(var f=0;f<this.nSpectra;f++)if(!(0<=b&&f!=b)){var e=this.spectra.get(f),D=e.getInfo(a);if(0<=b&&null!=a&&(2==D.size()||a.equalsIgnoreCase("id")))return 2==D.size()&&D.remove("id"),D;JSV.common.Parameters.putInfo(a,D,"type",e.getDataType());JSV.common.Parameters.putInfo(a,D,"titleLabel",
e.getTitleLabel());JSV.common.Parameters.putInfo(a,D,"filePath",e.getFilePath().$replace("\\","/"));JSV.common.Parameters.putInfo(a,D,"PeakList",JSV.common.Parameters.isMatch(a,"PeakList")?this.getMeasurementInfo(JSV.common.Annotation.AType.PeakList,f):null);JSV.common.Parameters.putInfo(a,D,"Integration",JSV.common.Parameters.isMatch(a,"Integration")?this.getMeasurementInfo(JSV.common.Annotation.AType.Integration,f):null);if(0<=b)return D;k.addLast(D)}return c},"~S,~N");c(b,"getTitle",function(a){return 1==
this.nSpectra||0<=this.iSpectrumSelected&&(!a||1==this.nSplit)?this.getSpectrum().getTitle():null},"~B");c(b,"getCurrentView",function(){this.setScale(this.getFixedSelectedSpectrumIndex());return this.viewData.getScale()});c(b,"set2DXY",function(a,b,c){var k;null!=this.gs2dLinkedX&&(k=this.toPixelX(a),k!=this.fixX(k)&&(k=-2147483648,a=1.7976931348623157E308),this.cur1D2x1.setX(a,k));null!=this.gs2dLinkedY&&(k=this.toPixelX(b),k!=this.fixX(k)&&(k=-2147483648,b=1.7976931348623157E308),this.cur1D2x2.setX(b,
k));this.cur1D2Locked=c},"~N,~N,~B");c(b,"dialogsToFront",function(a){if(null!=this.dialogs){null==a&&(a=this.getSpectrum());for(var b,c=this.dialogs.entrySet().iterator();c.hasNext()&&((b=c.next())||1);){var k=b.getValue();this.isVisible(k)&&(null==a?k.setVisible(!0):k.setFocus(k.getSpectrum()===a))}}},"JSV.common.Spectrum");c(b,"setPlotColors",function(a){var b=a;if(b.length>this.nSpectra)a=Array(this.nSpectra),System.arraycopy(b,0,a,0,this.nSpectra),b=a;else if(this.nSpectra>b.length){a=Array(this.nSpectra);
var c=this.nSpectra-b.length;System.arraycopy(b,0,a,0,b.length);for(var k=0,b=b.length;k<c;k++,b++)a[b]=this.generateRandomColor();b=a}this.plotColors=b},"~O");c(b,"disposeImage",function(){null!=this.image2D&&this.image2D.parentNode.removeChild(this.image2D);this.plotColors=this.highlights=this.pd=this.jsvp=this.image2D=null});c(b,"generateRandomColor",function(){for(;;){var a=w(255*Math.random()),b=w(255*Math.random()),c=w(255*Math.random()),a=this.g2d.getColor3(a,b,c);if(0!=a.getRGB())return a}});
c(b,"setPlotColor0",function(a){this.plotColors[0]=a},"~O");c(b,"getPlotColor",function(a){return a>=this.plotColors.length?null:this.plotColors[a]},"~N");c(b,"setColorFromToken",function(a,b){null!=b&&this.g2d.setGraphicsColor(a,b===JSV.common.ScriptToken.PLOTCOLOR?this.plotColors[0]:this.pd.getColor(b))},"~O,JSV.common.ScriptToken");c(b,"setPlotColor",function(a,b){var c;switch(b){case -3:c=JSV.common.GraphSet.veryLightGrey;break;case -2:c=this.pd.BLACK;break;case -1:c=this.pd.getColor(JSV.common.ScriptToken.INTEGRALPLOTCOLOR);
break;default:c=this.plotColors[b]}this.g2d.setGraphicsColor(a,c)},"~O,~N");c(b,"draw2DImage",function(){null!=this.imageView&&this.g2d.drawGrayScaleImage(this.gMain,this.image2D,this.imageView.xPixel0,this.imageView.yPixel0,this.imageView.xPixel0+this.imageView.xPixels-1,this.imageView.yPixel0+this.imageView.yPixels-1,this.imageView.xView1,this.imageView.yView1,this.imageView.xView2,this.imageView.yView2)});c(b,"get2DImage",function(){this.imageView=new JSV.common.ImageView;this.imageView.set(this.viewList.get(0).getScale());
if(!this.update2dImage(!0))return!1;this.imageView.resetZoom();return this.sticky2Dcursor=!0},"JSV.common.Spectrum");c(b,"update2dImage",function(a){this.imageView.set(this.viewData.getScale());var b=this.getSpectrumAt(0),c=this.imageView.get2dBuffer(b,!a);if(null==c)return this.imageView=this.image2D=null,!1;a&&(c=this.imageView.adjustView(b,this.viewData),this.imageView.resetView());this.image2D=this.g2d.newGrayScaleImage(this.gMain,this.image2D,this.imageView.imageWidth,this.imageView.imageHeight,
c);this.setImageWindow();return!0},"~B");c(b,"getAnnotation",function(a,b,c,k,f,e,D){return(new JSV.common.ColoredAnnotation).setCA(a,b,this.getSpectrum(),c,this.pd.BLACK,k,f,e,D)},"~N,~N,~S,~B,~B,~N,~N");c(b,"getAnnotation",function(a,b){return JSV.common.Annotation.getColoredAnnotation(this.g2d,this.getSpectrum(),a,b)},"JU.Lst,JSV.common.Annotation");c(b,"fillBox",function(a,b,c,k,f,e){this.setColorFromToken(a,e);this.g2d.fillRect(a,Math.min(b,k),Math.min(c,f),Math.abs(b-k),Math.abs(c-f))},"~O,~N,~N,~N,~N,JSV.common.ScriptToken");
c(b,"drawBox",function(a,b,c,k,f,e){this.setColorFromToken(a,e);this.g2d.drawRect(a,Math.min(b,k),Math.min(c,f),Math.abs(b-k)-1,Math.abs(c-f)-1)},"~O,~N,~N,~N,~N,JSV.common.ScriptToken");c(b,"drawHandle",function(a,b,c,k,f){f?this.g2d.drawRect(a,b-k,c-k,2*k,2*k):this.g2d.fillRect(a,b-k,c-k,2*k+1,2*k+1)},"~O,~N,~N,~N,~B");c(b,"setCurrentBoxColor",function(a){this.g2d.setGraphicsColor(a,this.pd.BLACK)},"~O");c(b,"fillArrow",function(a,b,c,k,f){var e=1;switch(b){case 1:case 3:e=-1}c=F(-1,[c-5,c-5,c+
5,c+5,c+8,c,c-8]);k=F(-1,[k+5*e,k-e,k-e,k+5*e,k+5*e,k+10*e,k+5*e]);switch(b){case 1:case 2:f?this.g2d.fillPolygon(a,k,c,7):this.g2d.drawPolygon(a,k,c,7);break;case 3:case 4:f?this.g2d.fillPolygon(a,c,k,7):this.g2d.drawPolygon(a,c,k,7)}},"~O,~N,~N,~N,~B");c(b,"fillCircle",function(a,b,c,k){k?this.g2d.fillCircle(a,b-4,c-4,8):this.g2d.drawCircle(a,b-4,c-4,8)},"~O,~N,~N,~B");c(b,"setAnnotationColor",function(a,b,c){null!=c?this.setColorFromToken(a,c):(c=null,C(b,"JSV.common.ColoredAnnotation")&&(c=b.getColor()),
null==c&&(c=this.pd.BLACK),this.g2d.setGraphicsColor(a,c))},"~O,JSV.common.Annotation,JSV.common.ScriptToken");c(b,"setSolutionColor",function(a,b,c){for(var k=0;k<this.nSpectra;k++){var f=this.spectra.get(k),e=b||!f.canShowSolutionColor()?-1:a.getColour(f,c);f.setFillColor(-1==e?null:this.pd.vwr.parameters.getColor1(e))}},"JSV.api.VisibleInterface,~B,~B");c(b,"setIRMode",function(a,b){for(var c=0;c<this.nSpectra;c++){var k=this.spectra.get(c);if(k.dataType.equals(b)){var f=JSV.common.Spectrum.taConvert(k,
a);f!==k&&this.pd.setSpecForIRMode(f)}}},"JSV.common.Spectrum.IRMode,~S");c(b,"getSpectrumCount",function(){return 0});c(b,"invertYAxis",function(){this.viewList.get(0).init(null,0,0,this.getSpectrum().invertYAxis().isContinuous());this.resetViewCompletely()});b.isDialog=c(b,"isDialog",function(a){return null!=a&&a.isDialog()},"JSV.api.AnnotationData");b.$GraphSet$Highlight$=function(){var a=p(function(){U(this,arguments);this.x2=this.x1=0;this.spectrum=this.color=null;q(this,arguments)},JSV.common.GraphSet,
"Highlight",null);n(a,function(a,b,c,f){this.x1=a;this.x2=b;this.color=f;this.spectrum=c},"~N,~N,JSV.common.Spectrum,javajs.api.GenericColor");e(a,"toString",function(){return"highlight "+this.x1+" "+this.x2+" "+this.spectrum});e(a,"equals",function(a){return!C(a,"JSV.common.GraphSet.Highlight")?!1:a.x1==this.x1&&a.x2==this.x2},"~O");e(a,"hashCode",function(){return w(1E3*this.x1+1E6*this.x2)})};b.RT2=Math.sqrt(2);b.veryLightGrey=null});r("JSV.common");v(["JSV.common.XYScaleConverter"],"JSV.common.ImageView",
["JSV.common.Coordinate","$.ScaleData"],function(){var b=p(function(){this.buf2d=null;this.yView2=this.xView2=this.yView1=this.xView1=this.yPixelZoom2=this.xPixelZoom2=this.yPixelZoom1=this.xPixelZoom1=this.yPixels=this.xPixels=this.imageHeight=this.imageWidth=this.yPixel1=this.xPixel1=this.yPixel0=this.xPixel0=this.averageGray=this.grayFactorLast=0;this.minX=NaN;this.maxZ=this.minZ=this.maxY=this.minY=this.maxX=0;this.scaleData=null;q(this,arguments)},JSV.common,"ImageView",null,JSV.common.XYScaleConverter);
c(b,"set",function(a){Double.isNaN(this.minX)&&(this.minX=a.minX,this.maxX=a.maxX);this.minZ=a.minY;this.maxZ=a.maxY;this.scaleData=new JSV.common.ScaleData},"JSV.common.ScaleData");c(b,"setZoom",function(a,b,c,k){this.xPixelZoom1=Math.min(a,c);this.yPixelZoom1=Math.min(b,k);this.xPixelZoom2=Math.max(a,c);this.yPixelZoom2=Math.max(b,k);this.setView()},"~N,~N,~N,~N");c(b,"setXY0",function(a,b,c){this.xPixel0=b;this.yPixel0=c;this.xPixel1=this.xPixel0+this.xPixels-1;this.yPixel1=this.yPixel0+this.yPixels-
1;this.setMinMaxY(a)},"JSV.common.Spectrum,~N,~N");c(b,"setPixelWidthHeight",function(a,b){this.xPixels=a;this.yPixels=b},"~N,~N");c(b,"resetView",function(){this.yView1=this.xView1=0;this.xView2=this.imageWidth-1;this.yView2=this.imageHeight-1});c(b,"setView",function(){0==this.xPixelZoom1&&this.resetZoom();var a=this.toImageX(this.xPixelZoom1),b=this.toImageY(this.yPixelZoom1),c=this.toImageX(this.xPixelZoom2),k=this.toImageY(this.yPixelZoom2);this.xView1=Math.min(a,c);this.yView1=Math.min(b,k);
this.xView2=Math.max(a,c);this.yView2=Math.max(b,k);this.setScaleData();this.resetZoom()});c(b,"resetZoom",function(){this.xPixelZoom1=this.xPixel0;this.yPixelZoom1=this.yPixel0;this.xPixelZoom2=this.xPixel1;this.yPixelZoom2=this.yPixel1});c(b,"toImageX",function(a){return this.xView1+w(Math.floor((a-this.xPixel0)/(this.xPixels-1)*(this.xView2-this.xView1)))},"~N");c(b,"toImageY",function(a){return this.yView1+w(Math.floor((a-this.yPixel0)/(this.yPixels-1)*(this.yView2-this.yView1)))},"~N");c(b,"toImageX0",
function(a){return JSV.common.Coordinate.intoRange(w((1*a-this.xPixel0)/(this.xPixels-1)*(this.imageWidth-1)),0,this.imageWidth-1)},"~N");c(b,"toImageY0",function(a){return JSV.common.Coordinate.intoRange(w((1*a-this.yPixel0)/(this.yPixels-1)*(this.imageHeight-1)),0,this.imageHeight-1)},"~N");c(b,"isXWithinRange",function(a){return a>=this.xPixel0-5&&a<this.xPixel0+this.xPixels+5},"~N");c(b,"toSubspectrumIndex",function(a){return JSV.common.Coordinate.intoRange(this.imageHeight-1-this.toImageY(a),
0,this.imageHeight-1)},"~N");c(b,"toX0",function(a){return this.maxX+(this.minX-this.maxX)*(this.fixX(a)-this.xPixel0)/(this.xPixels-1)},"~N");c(b,"toPixelX0",function(a){return this.xPixel1-w((a-this.minX)/(this.maxX-this.minX)*(this.xPixels-1))},"~N");c(b,"toPixelY0",function(a){return this.yPixel1-w(a/(this.imageHeight-1)*(this.yPixels-1))},"~N");c(b,"subIndexToPixelY",function(a){return this.yPixel0+w(1*(this.imageHeight-1-a-this.yView1)/(this.yView2-this.yView1)*(this.yPixels-1))},"~N");c(b,
"fixSubIndex",function(a){return JSV.common.Coordinate.intoRange(a,this.imageHeight-1-this.yView2,this.imageHeight-1-this.yView1)},"~N");c(b,"setView0",function(a,b,c,k){a=this.toImageX0(a);b=this.toImageY0(b);c=this.toImageX0(c);k=this.toImageY0(k);this.xView1=Math.min(a,c);this.yView1=Math.min(b,k);this.xView2=Math.max(a,c);this.yView2=Math.max(b,k);this.resetZoom()},"~N,~N,~N,~N");c(b,"get2dBuffer",function(a,b){var c=a.getSubSpectra();if(null==c||!c.get(0).isContinuous())return null;var k=a.getXYCoords(),
f=c.size();this.imageWidth=k.length;this.imageHeight=f;var e=255/(this.maxZ-this.minZ);if(!b&&null!=this.buf2d&&e==this.grayFactorLast)return this.buf2d;this.grayFactorLast=e;for(var D=this.imageWidth*this.imageHeight,l=null==this.buf2d||this.buf2d.length!=D?F(D,0):this.buf2d,m=0,j=0;j<f;j++){var n=c.get(j).xyCoords;if(n.length!=k.length)return null;for(var p=0;p<k.length;p++){var q=n[p].getYVal(),q=255-JSV.common.Coordinate.intoRange(w((q-this.minZ)*e),0,255);l[--D]=q;m+=q}}this.averageGray=1-m/
(this.imageWidth*this.imageHeight)/255;System.out.println("Average gray = "+this.averageGray);return this.buf2d=l},"JSV.common.Spectrum,~B");c(b,"adjustView",function(a,b){for(var c=0,k=!1;((k=0.05>this.averageGray)||0.3<this.averageGray)&&10>c++;)b.scaleSpectrum(-2,k?2:0.5),this.set(b.getScale()),this.get2dBuffer(a,!1);return this.buf2d},"JSV.common.Spectrum,JSV.common.ViewData");c(b,"getBuffer",function(){return this.buf2d});c(b,"setMinMaxY",function(a){a=a.getSubSpectra();var b=a.get(0);this.maxY=
b.getY2D();this.minY=a.get(a.size()-1).getY2D();b.y2DUnits.equalsIgnoreCase("Hz")&&(this.maxY/=b.freq2dY,this.minY/=b.freq2dY);this.setScaleData()},"JSV.common.Spectrum");c(b,"setScaleData",function(){this.scaleData.minY=this.minY;this.scaleData.maxY=this.maxY;this.scaleData.setYScale(this.toY(this.yPixel0),this.toY(this.yPixel1),!1,!1)});e(b,"fixX",function(a){return a<this.xPixel0?this.xPixel0:a>this.xPixel1?this.xPixel1:a},"~N");e(b,"fixY",function(a){return JSV.common.Coordinate.intoRange(a,this.yPixel0,
this.yPixel1)},"~N");e(b,"getScale",function(){return this.scaleData});e(b,"toX",function(a){return this.maxX+(this.minX-this.maxX)*this.toImageX(this.fixX(a))/(this.imageWidth-1)},"~N");e(b,"toY",function(a){a=this.toSubspectrumIndex(a);return this.maxY+(this.minY-this.maxY)*a/(this.imageHeight-1)},"~N");e(b,"toPixelX",function(a){var b=this.toX(this.xPixel0),c=this.toX(this.xPixel1);return this.xPixel0+w((a-b)/(c-b)*(this.xPixels-1))},"~N");e(b,"toPixelY",function(a){return w(this.yPixel0+(a-this.scaleData.minYOnScale)/
(this.scaleData.maxYOnScale-this.scaleData.minYOnScale)*this.yPixels)},"~N");e(b,"getXPixels",function(){return this.xPixels});e(b,"getYPixels",function(){return this.yPixels});e(b,"getXPixel0",function(){return this.xPixel0})});r("JSV.common");v(["JSV.common.Measurement"],"JSV.common.Integral",null,function(){var b=s(JSV.common,"Integral",JSV.common.Measurement);c(b,"setInt",function(a,b,c,k,f,e){this.setA(a,b,c,"",!1,!1,0,6);this.setPt2(f,e);this.setValue(k);return this},"~N,~N,JSV.common.Spectrum,~N,~N,~N")});
r("JSV.common");u=s(JSV.common,"IntegralComparator",null,java.util.Comparator);e(u,"compare",function(b,a){return b.getXVal()<a.getXVal()?-1:b.getXVal()>a.getXVal()?1:0},"JSV.common.Measurement,JSV.common.Measurement");r("JSV.common");v(["java.lang.Enum","JSV.common.MeasurementData","$.IntegralComparator"],"JSV.common.IntegralData","java.util.Collections $.StringTokenizer JU.AU $.BS $.DF $.Lst $.PT JSV.common.Annotation $.Coordinate $.Integral $.ScriptToken".split(" "),function(){var b=p(function(){this.intRange=
this.percentOffset=this.percentMinY=0;this.normalizationFactor=1;this.integralTotal=this.offset=this.percentRange=0;this.haveRegions=!1;this.xyCoords=null;q(this,arguments)},JSV.common,"IntegralData",JSV.common.MeasurementData);n(b,function(a,b,c,f){A(this,JSV.common.IntegralData,[JSV.common.Annotation.AType.Integration,f]);this.percentMinY=a;this.percentOffset=b;this.percentRange=c;this.calculateIntegral()},"~N,~N,~N,JSV.common.Spectrum");n(b,function(a,b){A(this,JSV.common.IntegralData,[JSV.common.Annotation.AType.Integration,
a]);null==b?this.autoIntegrate():(this.percentOffset=b.integralOffset,this.percentRange=b.integralRange,this.calculateIntegral())},"JSV.common.Spectrum,JSV.common.Parameters");c(b,"getPercentMinimumY",function(){return this.percentMinY});c(b,"getPercentOffset",function(){return this.percentOffset});c(b,"getIntegralFactor",function(){return this.intRange});c(b,"update",function(a){this.update(a.integralMinY,a.integralOffset,a.integralRange)},"JSV.common.Parameters");c(b,"update",function(a,b,c){var f=
this.percentRange;if(!(0>=c||c==this.percentRange&&b==this.percentOffset)){this.percentOffset=b;this.percentRange=c;this.checkRange();a=c/100/this.integralTotal;b/=100;for(var e=0;e<this.xyCoords.length;e++){var D=this.xyCoords[e].getYVal(),D=(D-this.offset)/this.intRange;this.xyCoords[e].setYVal(D*a+b)}1!=this.normalizationFactor&&(this.normalizationFactor*=f/c);if(this.haveRegions)for(e=this.size();0<=--e;)c=this.get(e),f=this.getYValueAt(c.getXVal()),D=this.getYValueAt(c.getXVal2()),c.setYVal(f),
c.setYVal2(D),c.setValue(100*Math.abs(D-f)*this.normalizationFactor);this.intRange=a;this.offset=b}},"~N,~N,~N");c(b,"getYValueAt",function(a){return JSV.common.Coordinate.getYValueAt(this.xyCoords,a)},"~N");c(b,"addIntegralRegion",function(a,b){if(Double.isNaN(a))return this.haveRegions=!1,this.clear(),null;if(Double.isNaN(b))return this.splitIntegral(a);if(a==b)return null;if(a<b)return this.clear(a,b),null;var c=this.getYValueAt(a),f=this.getYValueAt(b);this.haveRegions=!0;c=(new JSV.common.Integral).setInt(a,
c,this.spec,100*Math.abs(f-c)*this.normalizationFactor,b,f);this.clear(a,b);this.addLast(c);java.util.Collections.sort(this,JSV.common.IntegralData.c);return c},"~N,~N");c(b,"splitIntegral",function(a){var b=this.find(a);if(0>b)return null;var c=this.removeItemAt(b),b=c.getXVal(),c=c.getXVal2();this.addIntegralRegion(b,a);return this.addIntegralRegion(a,c)},"~N");e(b,"setSpecShift",function(a){JSV.common.Coordinate.shiftX(this.xyCoords,a);for(var b=this.size();1<=--b;)this.get(b).addSpecShift(a)},
"~N");c(b,"addMarks",function(a){a=JU.PT.rep(" "+a,","," ");a=JU.PT.rep(a," -"," #");a=JU.PT.rep(a,"--","-#");a=a.$replace("-","^");a=a.$replace("#","-");a=JSV.common.ScriptToken.getTokens(a);for(var b=0;b<a.size();b++)try{var c=a.get(b),f=0,e=c.indexOf("^");if(!(0>e)){var D=c.indexOf(":");D>e&&(f=Double.$valueOf(c.substring(D+1).trim()).doubleValue(),c=c.substring(0,D).trim());var l=Double.$valueOf(c.substring(0,e).trim()).doubleValue(),m=Double.$valueOf(c.substring(e+1).trim()).doubleValue();0==
m&&0==l&&this.clear();if(m!=l){var j=this.addIntegralRegion(Math.max(m,l),Math.min(m,l));null!=j&&0<f&&this.setSelectedIntegral(j,f)}}}catch(n){if(!y(n,Exception))throw n;}},"~S");c(b,"calculateIntegral",function(){var a=this.spec.getXYCoords();this.xyCoords=Array(a.length);this.integralTotal=0;this.checkRange();for(var b=1E100,c=0;c<a.length;c++){var f=a[c].getYVal();f<b&&0<=f&&(b=f)}for(var e=1E100,D=-1E100,c=0;c<a.length;c++)f=a[c].getYVal(),this.integralTotal+=f-b,this.integralTotal<e&&(e=this.integralTotal),
this.integralTotal>D&&(D=this.integralTotal);this.integralTotal=D-e;this.intRange=this.percentRange/100/this.integralTotal;this.offset=this.percentOffset/100;e=0;for(c=a.length;0<=--c;)f=a[c].getYVal(),e+=f-b,this.xyCoords[c]=(new JSV.common.Coordinate).set(a[c].getXVal(),e*this.intRange+this.offset);return this.xyCoords});c(b,"checkRange",function(){this.percentOffset=Math.max(5,this.percentOffset);this.percentRange=Math.max(10,this.percentRange)});b.getIntegrationRatiosFromString=c(b,"getIntegrationRatiosFromString",
function(a,b){for(var c=new JU.Lst,f=new java.util.StringTokenizer(b,",");f.hasMoreTokens();){var e=f.nextToken(),e=new java.util.StringTokenizer(e,":"),e=(new JSV.common.Annotation).setA(Double.parseDouble(e.nextToken()),0,a,e.nextToken(),!0,!1,0,0);c.addLast(e)}return c},"JSV.common.Spectrum,~S");c(b,"getXYCoords",function(){return this.xyCoords});c(b,"getPercentYValueAt",function(a){return 100*this.getYValueAt(a)},"~N");c(b,"dispose",function(){this.xyCoords=this.spec=null});c(b,"setSelectedIntegral",
function(a,b){var c=a.getValue();this.factorAllIntegrals(0>=b?1/this.normalizationFactor:b/c,0>=b)},"JSV.common.Measurement,~N");c(b,"factorAllIntegrals",function(a,b){for(var c=0;c<this.size();c++){var f=this.get(c);f.setValue(a*f.getValue())}this.normalizationFactor=b?1:this.normalizationFactor*a},"~N,~B");c(b,"remove",function(a){return this.removeItemAt(a)},"~N");c(b,"getBitSet",function(){var a=JU.BS.newN(this.xyCoords.length);if(0==this.size())return a.setBits(0,this.xyCoords.length),a;for(var b=
this.size();0<=--b;){var c=this.get(b),f=JSV.common.Coordinate.getNearestIndexForX(this.xyCoords,c.getXVal()),c=JSV.common.Coordinate.getNearestIndexForX(this.xyCoords,c.getXVal2());a.setBits(Math.min(f,c),Math.max(f,c))}return a});e(b,"getMeasurementListArray",function(){for(var a=Array(this.size()),b=0,c=this.size();0<=--c;)a[b++]=B(-1,[""+b,JU.DF.formatDecimalDbl(this.get(c).getXVal(),2),JU.DF.formatDecimalDbl(this.get(c).getXVal2(),2),this.get(c).text]);return a},"~S");e(b,"getMeasurementListArrayReal",
function(){for(var a=JU.AU.newDouble2(this.size()),b=0,c=this.size();0<=--c;b++)a[b]=O(-1,[this.get(c).getXVal(),this.get(c).getXVal2(),this.get(c).getValue()]);return a},"~S");e(b,"getDataHeader",function(){return JSV.common.IntegralData.$HEADER});c(b,"shiftY",function(a,b,c,f){b=w(100*(c+f-b)/f);0>a&&(b-=this.percentOffset);0>a?this.update(0,this.percentOffset,b):this.update(0,b,this.percentRange)},"~N,~N,~N,~N");c(b,"autoIntegrate",function(){null==this.xyCoords&&this.calculateIntegral();if(0!=
this.xyCoords.length){this.clear();for(var a=-1,b=0,c=this.xyCoords[this.xyCoords.length-1].getYVal(),f=this.xyCoords.length-1;0<=--f;){var e=this.xyCoords[f].getYVal();b++;1E-4>e-c&&0>a?e<c&&(c=e,b=0):0>a?(a=f+Math.min(b,20),c=e,b=0):1E-4>e-c?(1==b&&(c=e),20<=b&&(this.addIntegralRegion(this.xyCoords[a].getXVal(),this.xyCoords[f].getXVal()),a=-1,c=e,b=0)):(b=0,c=e)}a=this.spec.getHydrogenCount();0<a&&this.factorAllIntegrals(a/this.percentRange,!1)}});c(b,"getInfo",function(a){a.put("offset",Double.$valueOf(this.myParams.integralOffset));
a.put("range",Double.$valueOf(this.myParams.integralRange));a.put("normalizationFactor",Double.$valueOf(this.normalizationFactor));a.put("integralTotal",Double.$valueOf(this.integralTotal));Q(this,JSV.common.IntegralData,"getInfo",[a])},"java.util.Map");c(b,"setMinimumIntegral",function(a){for(var b=this.size();0<=--b;)this.get(b).getValue()<a&&this.removeItemAt(b)},"~N");var a=s(JSV.common.IntegralData,"IntMode",Enum);a.getMode=c(a,"getMode",function(a){for(var b,c=0,f=JSV.common.IntegralData.IntMode.values();c<
f.length&&((b=f[c])||1);c++)if(a.startsWith(b.name()))return b;return JSV.common.IntegralData.IntMode.NA},"~S");j(a,"OFF",0,[]);j(a,"ON",1,[]);j(a,"TOGGLE",2,[]);j(a,"AUTO",3,[]);j(a,"LIST",4,[]);j(a,"MARK",5,[]);j(a,"MIN",6,[]);j(a,"UPDATE",7,[]);j(a,"CLEAR",8,[]);j(a,"NA",9,[]);b.c=new JSV.common.IntegralComparator;b.$HEADER=B(-1,["peak","start/ppm","end/ppm","value"])});r("JSV.common");v(["java.lang.Enum","JSV.source.JDXDataObject","JU.Lst"],"JSV.common.Spectrum","java.util.Hashtable JU.PT JSV.common.Coordinate $.Parameters $.PeakInfo JSV.source.JDXSourceStreamTokenizer JU.Logger".split(" "),
function(){var b=p(function(){this.id="";this.convertedSpectrum=this.highlightedPeak=this.selectedPeak=this.peakYLabel=this.peakXLabel=this.peakList=this.subSpectra=this.fillColor=null;this.specShift=0;this.userYFactor=1;this.currentSubSpectrumIndex=0;this.exportXAxisLeftToRight=this.$isForcedSubset=!1;this.titleLabel=null;q(this,arguments)},JSV.common,"Spectrum",JSV.source.JDXDataObject);K(b,function(){this.peakList=new JU.Lst});n(b,function(){A(this,JSV.common.Spectrum,[]);this.headerTable=new JU.Lst;
this.xyCoords=[];this.parent=this});c(b,"dispose",function(){});c(b,"isForcedSubset",function(){return this.$isForcedSubset});c(b,"setId",function(a){this.id=a},"~S");c(b,"copy",function(){var a=new JSV.common.Spectrum;this.copyTo(a);a.setPeakList(this.peakList,this.peakXLabel,null);a.fillColor=this.fillColor;return a});c(b,"getXYCoords",function(){return this.getCurrentSubSpectrum().xyCoords});c(b,"getPeakList",function(){return this.peakList});c(b,"setPeakList",function(a,b,c){this.peakList=a;this.peakXLabel=
b;this.peakYLabel=c;for(b=a.size();0<=--b;)this.peakList.get(b).spectrum=this;JU.Logger.debugging&&JU.Logger.info("Spectrum "+this.getTitle()+" peaks: "+a.size());return a.size()},"JU.Lst,~S,~S");c(b,"selectPeakByFileIndex",function(a,b,c){if(null!=this.peakList&&0<this.peakList.size()&&(null==c||this.sourceID.equals(b)))for(var k=0;k<this.peakList.size();k++)if(this.peakList.get(k).checkFileIndex(a,b,c))return System.out.println("JSV.Spectrum selecting peak by FileIndex "+this+" "+this.peakList.get(k)),
this.selectedPeak=this.peakList.get(k);return null},"~S,~S,~S");c(b,"selectPeakByFilePathTypeModel",function(a,b,c){if(null!=this.peakList&&0<this.peakList.size())for(var k=0;k<this.peakList.size();k++)if(this.peakList.get(k).checkFileTypeModel(a,b,c))return System.out.println("JSV.Spectrum selecting peak byFilePathTypeModel "+this+" "+this.peakList.get(k)),this.selectedPeak=this.peakList.get(k);return null},"~S,~S,~S");c(b,"matchesPeakTypeModel",function(a,b){if(a.equals("ID"))return this.sourceID.equalsIgnoreCase(b);
if(null!=this.peakList&&0<this.peakList.size())for(var c=0;c<this.peakList.size();c++)if(this.peakList.get(c).checkTypeModel(a,b))return!0;return!1},"~S,~S");c(b,"setSelectedPeak",function(a){this.selectedPeak=a},"JSV.common.PeakInfo");c(b,"setHighlightedPeak",function(a){this.highlightedPeak=a},"JSV.common.PeakInfo");c(b,"getSelectedPeak",function(){return this.selectedPeak});c(b,"getModelPeakInfoForAutoSelectOnLoad",function(){if(null!=this.peakList)for(var a=0;a<this.peakList.size();a++)if(this.peakList.get(a).autoSelectOnLoad())return this.peakList.get(a);
return null});c(b,"getAssociatedPeakInfo",function(a,b){this.selectedPeak=this.findPeakByCoord(a,b);return null==this.selectedPeak?this.getBasePeakInfo():this.selectedPeak},"~N,JSV.common.Coordinate");c(b,"findPeakByCoord",function(a,b){if(null!=b&&null!=this.peakList&&0<this.peakList.size()){for(var c=b.getXVal(),k=-1,f=1E100,e=0;e<this.peakList.size();e++){var D=this.peakList.get(e).checkRange(a,c);D<f&&(f=D,k=e)}if(0<=k)return this.peakList.get(k)}return null},"~N,JSV.common.Coordinate");c(b,"getPeakTitle",
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1));var k=a.startsWith("MOL=");k&&(a=a.substring(4),b=a.indexOf("/n__Jmol"),0<b&&(a=a.substring(0,b)+JU.PT.rep(a.substring(b),"/n","\n")),b=a=JU.PT.rep(a,"\\n","\n"));var f=""+JSV.common.JSVFileManager.getSimulationHash(a,c);JU.Logger.debugging&&JU.Logger.info("JSVFileManager type="+c+" key="+f+" name="+a);var e=JSV.common.JSVFileManager.cacheGet(f);if(null!=e)return e;e=k?null:JU.PT.rep(JSV.common.JSVFileManager.nciResolver,"%FILE",JU.PT.escapeUrl(a));if(!k&&null==(b=JSV.common.JSVFileManager.getFileAsString(e))||
0<=b.indexOf("<html"))return JU.Logger.error("no MOL data returned by NCI"),null;var j=c.equals("C13"),l;l=j?JSV.common.JSVFileManager.nmrdbServerC13:JSV.common.JSVFileManager.nmrdbServerH1;l=l.$replace("$MOLFILE",b);JSV.common.JSVFileManager.cachePut("url",l);var m=JSV.common.JSVFileManager.getFileAsString(l);if(0<=(null==m?m="Error: Error fetching simulation":m).indexOf("Error:"))return m;var n=(new JU.JSJSONParser).parseMap(m,!0);JSV.common.JSVFileManager.cachePut("json",m);return JSV.common.JSVFileManager.processJSON(f,
e,l,a,c,b,n,j,k)},"~S");b.processJSON=c(b,"processJSON",function(a,b,c,e,f,g,j,l,m){var n=j.get("data");j=n.get("molfile");null==j&&(System.out.println("JSVFileManager: no MOL file returned from EPFL"),j=g);var p=JSV.common.JSVFileManager.getAtomMap(j,g);JSV.common.JSVFileManager.cachePut("mol",g);(j=m||!JSV.common.JSViewer.isJS?null:g.getBytes())&&Jmol.Cache.put("http://SIMULATION/"+f+"/"+e+"#molfile",j);c="<Signals src="+JU.PT.esc(c.substring(0,c.indexOf("?")))+">\n";f=l?"13C":"1HNMR";j=n.get("jcamp");
j=JSV.common.JSVFileManager.hackNewNmriumSimulationJCAMP(j);for(var n=n.get("signals"),q=JSV.common.JSVFileManager.getval(j,"##$BF1"),q=null==q?l?100:400:Float.parseFloat(q),r=new JU.SB,s=n.size();0<=--s;){var u=n.get(s);r.append("<Signal ");JSV.common.JSVFileManager.setAttr(r,"type",f,null);var v=u.get("atoms").get(0);null==p?JSV.common.JSVFileManager.setAttr(r,"atoms",v,null):r.append('atoms="').appendI(p[v.intValue()]).append('" ');JSV.common.JSVFileManager.setAttr(r,"multiplicity","multiplicity",
u);v=u.get("delta");v=JSV.common.JSVFileManager.getSignalMinMax(u,v.floatValue(),q,l);JSV.common.JSVFileManager.setAttr(r,"xMin",""+v[0],null);JSV.common.JSVFileManager.setAttr(r,"xMax",""+v[1],null);JSV.common.JSVFileManager.setAttr(r,"integral","nbAtoms",u);r.append("></Signal>\n")}r.append("</Signals>");c+=r.toString();JU.Logger.debugging&&JU.Logger.info(c);JSV.common.JSVFileManager.cachePut("xml",c);j="##TITLE="+(m?"JMOL SIMULATION/"+f:e)+"\n"+j.substring(j.indexOf("\n##")+1);l=g.indexOf("\n");
l=g.indexOf("\n",l+1);0<l&&l==g.indexOf("\n \n")&&(g=g.substring(0,l+1)+"Created "+JSV.common.JSVFileManager.viewer.apiPlatform.getDateFormat("8824")+" by JSpecView "+JSV.common.JSVersion.VERSION+g.substring(l+1));l=j.indexOf("##.");e=JSV.common.JSVFileManager.getAbbreviatedSimulationName(e,f,!1);p=e.indexOf("id='");m&&0<p&&(e=e.substring(p+4,(e+"'").indexOf("'",p+4)));JSV.common.JSVFileManager.cachePut(f+"-json.jcamp",j);j=j.substring(0,l)+"##$MODELS=\n<Models>\n<ModelData id="+JU.PT.esc(e)+' type="MOL" src='+
JU.PT.esc(b)+">\n"+g+"</ModelData>\n</Models>\n##$SIGNALS=\n"+c+"\n"+j.substring(l);JSV.common.JSVFileManager.cachePut("jcamp",j);JSV.common.JSVFileManager.cachePut(a,j);return j},"~S,~S,~S,~S,~S,~S,java.util.Map,~B,~B");b.getSignalMinMax=c(b,"getSignalMinMax",function(a,b,c,e){var f=V(2,0);if(e)f[0]=b-0.5,f[1]=b+0.5;else{a=a.get("js");e=1;for(var g=a.size();0<=--g;){var j=a.get(g),l=j.get("coupling").floatValue();switch(j.get("multiplicity")){case "d":e+=l/2;break;default:case "t":e+=l}}f[0]=b-e/
c;f[1]=b+e/c}return f},"java.util.Map,~N,~N,~B");b.hackNewNmriumSimulationJCAMP=c(b,"hackNewNmriumSimulationJCAMP",function(a){var b=JSV.common.JSVFileManager.getline(a,"##.SHIFT REFERENCE=INTERNAL"),c=JSV.common.JSVFileManager.getval(a,"##$OFFSET");null!=b&&null!=c&&(b=b.substring(0,b.lastIndexOf(", ")+2)+c,a=JSV.common.JSVFileManager.setline(a,"##$OFFSET",null),a=JSV.common.JSVFileManager.setline(a,"##.SHIFT REFERENCE=INTERNAL",b));return a},"~S");b.getline=c(b,"getline",function(a,b){var c=a.indexOf(b);
return 0>c?null:a.substring(c,a.indexOf("\n",c))},"~S,~S");b.getval=c(b,"getval",function(a,b){var c=a.indexOf(b);if(0>c)return null;var e=a.substring(a.indexOf("=",c)+1,a.indexOf("\n",c)),c=e.indexOf("$$");0<=c&&(e=e.substring(c));return e.trim()},"~S,~S");b.setline=c(b,"setline",function(a,b,c){b=a.indexOf(b);return 0>b?a:null==c?a.substring(0,b)+a.substring(a.indexOf("\n",b)+1):a.substring(0,b)+c+a.substring(a.indexOf("\n",b))},"~S,~S,~S");b.getAtomMap=c(b,"getAtomMap",function(a,b){var c=JSV.common.JSVFileManager.getCoord(a),
e=JSV.common.JSVFileManager.getCoord(b),f=c.length;if(f!=e.length)return null;var g=F(f,0),j=new JU.BS;j.setBits(0,f);for(var l=!1,m=0;m<f;m++)for(var n=c[m],p=j.nextSetBit(0);0<=p;p=j.nextSetBit(p+1))if(0.1>n.distanceSquared(e[p])){j.clear(p);g[m]=p;m!=p&&(l=!0);break}return l?g:null},"~S,~S");b.getCoord=c(b,"getCoord",function(a){a=JU.PT.split(a,"\n");for(var b=V(3,0),c=Integer.parseInt(a[3].substring(0,3).trim()),e=Array(c),f=0;f<c;f++)JU.PT.parseFloatArrayInfested(JU.PT.getTokens(a[4+f].substring(0,
31)),b),e[f]=JU.P3.new3(b[0],b[1],b[2]);return e},"~S");b.setAttr=c(b,"setAttr",function(a,b,c,e){a.append(b+'="').appendO(null==e?c:e.get(c)).append('" ')},"JU.SB,~S,~O,java.util.Map");b.getResource=c(b,"getResource",function(a,b,c){var e=null;try{if(null==(e=a.getClass().getResource(b)))c[0]="Couldn't find file: "+b}catch(f){if(y(f,Exception))c[0]="Exception "+f+" in getResource "+b;else throw f;}return e},"~O,~S,~A");b.getResourceString=c(b,"getResourceString",function(a,b,c){a=JSV.common.JSVFileManager.getResource(a,
b,c);if(null==a)return c[0]="Error loading resource "+b,null;if("string"==typeof a)return JSV.common.JSVFileManager.getFileAsString(a);b=new JU.SB;try{for(var e=new java.io.BufferedReader(new java.io.InputStreamReader(a.getContent(),"UTF-8")),f;null!=(f=e.readLine());)b.append(f).append("\n");e.close()}catch(g){if(y(g,Exception))c[0]=g.toString();else throw g;}return b.toString()},"~O,~S,~A");b.getJmolFilePath=c(b,"getJmolFilePath",function(a){try{a=JSV.common.JSVFileManager.getFullPathName(a)}catch(b){if(y(b,
"JSV.exception.JSVException"))return null;throw b;}return null==JSV.common.JSVFileManager.appletDocumentBase?a.$replace("\\","/"):a},"~S");b.getTagName=c(b,"getTagName",function(a){if(null==a)return"String"+ ++JSV.common.JSVFileManager.stringCount;if(JSV.common.JSVFileManager.isURL(a))try{if(a.startsWith("http://SIMULATION/"))return JSV.common.JSVFileManager.getAbbrSimulationFileName(a);var b=(new java.net.URL(Y("java.net.URL"),a,null)).getFile();return b.substring(b.lastIndexOf("/")+1)}catch(c){if(y(c,
"java.io.IOException"))return null;throw c;}return JSV.common.JSVFileManager.newFile(a).getName()},"~S");b.newFile=c(b,"newFile",function(a){return JSV.common.JSVFileManager.viewer.apiPlatform.newFile(a)},"~S");b.setDocumentBase=c(b,"setDocumentBase",function(a,b){JSV.common.JSVFileManager.viewer=a;JSV.common.JSVFileManager.appletDocumentBase=b},"JSV.common.JSViewer,java.net.URL");b.getSimulationType=c(b,"getSimulationType",function(a){return 0<=a.indexOf("C13/")?"C13":"H1"},"~S");b.appletDocumentBase=
null;b.viewer=null;b.jsDocumentBase="";b.urlPrefixes=B(-1,["http:","https:","ftp:","http://SIMULATION/","file:"]);b.htCorrelationCache=new java.util.Hashtable;b.cacheDir=null;b.nciResolver="https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=True";b.nmrdbServerH1='https://nmr-prediction.service.zakodium.com/v1/predict/proton?POST?{"molfile":"$MOLFILE","includeJDX":true}';b.nmrdbServerC13='https://nmr-prediction.service.zakodium.com/v1/predict/carbon?POST?{"molfile":"$MOLFILE","includeJDX":true}';
b.stringCount=0});r("JSV.common");v(["javajs.api.BytePoster","J.api.PlatformViewer","JSV.common.Spectrum"],"JSV.common.JSViewer","java.io.File java.net.URL java.util.Arrays $.Hashtable JU.CU $.Lst $.OC $.PT $.SB JSV.common.Annotation $.ExportType $.JSVFileManager $.PanelData $.PanelNode $.Parameters $.PeakInfo $.PrintLayout $.RepaintManager $.ScriptToken $.ScriptTokenizer $.SyncManager JSV.source.JDXReader $.JDXSource JSV.tree.SimpleTree JU.Logger".split(" "),function(){var b=p(function(){this.irMode=
this.overlayLegendDialog=this.viewDialog=this.dialogManager=this.jsvpPopupMenu=this.fileHelper=this.scriptQueue=this.properties=this.mainPanel=this.selectedPanel=this.repaintManager=this.parameters=this.panelNodes=this.currentSource=this.spectraTree=this.g2d=this.si=this.parentFrame=null;this.autoShowLegend=this.autoIntegrate=this.interfaceOverlaid=this.loadImaginary=this.isEmbedded=!1;this.obscureTitleFromUser=null;this.allowMenu=!0;this.initialEndIndex=this.initialStartIndex=-1;this.isSigned=this.isApplet=
this.isSingleThreaded=!1;this.recentScript="";this.display=this.html5Applet=this.syncID=this.fullName=this.appletName=null;this.maximumSize=2147483647;this.scriptLevelCount=this.nViews=this.fileCount=this.screenWidth=this.screenHeight=0;this.apiPlatform=this.integrationRatios=null;this.hasDisplay=!1;this.peakInfoModelSentToJmol=null;this.popupZoomEnabled=this.popupAllowMenu=!0;this.defaultLoadScript=null;this.nmrMaxY=NaN;this.recentStackPercent=5;this.lastPrintLayout=null;this.recentOpenURL="http://";
this.recentURL=null;this.recentSimulation="tylenol";q(this,arguments)},JSV.common,"JSViewer",null,[J.api.PlatformViewer,javajs.api.BytePoster]);K(b,function(){this.irMode=JSV.common.Spectrum.IRMode.NO_CONVERT});n(b,function(a,b,c,e){this.si=a;this.isApplet=b;this.hasDisplay=e;JSV.common.JSViewer.isJS=b&&c;c=null;self.Jmol&&(c=Jmol);JSV.common.JSViewer.jsmolObject=c;this.isSigned=a.isSigned();this.apiPlatform=this.getPlatformInterface("Platform");this.apiPlatform.setViewer(this,this.display);this.g2d=
this.getPlatformInterface("G2D");this.spectraTree=new JSV.tree.SimpleTree(this);this.parameters=this.getPlatformInterface("Parameters");this.parameters.setName("applet");this.fileHelper=this.getPlatformInterface("FileHelper").set(this);this.isSingleThreaded=this.apiPlatform.isSingleThreaded();this.panelNodes=new JU.Lst;this.repaintManager=new JSV.common.RepaintManager(this);b||this.setPopupMenu(!0,!0)},"JSV.api.ScriptInterface,~B,~B,~B");c(b,"setParentFrame",function(a){this.parentFrame=a},"javax.swing.JFrame");
c(b,"setProperty",function(a,b){null!=this.properties&&this.properties.setProperty(a,b)},"~S,~S");c(b,"setNode",function(a){a.jsvp!==this.selectedPanel&&this.si.siSetSelectedPanel(a.jsvp);this.si.siSendPanelChange();this.si.siNodeSet(a)},"JSV.common.PanelNode");c(b,"setPopupMenu",function(a,b){this.popupAllowMenu=a;this.popupZoomEnabled=b},"~B,~B");c(b,"showMenu",function(a,b){if(this.popupAllowMenu){if(null==this.jsvpPopupMenu)try{this.jsvpPopupMenu=this.getPlatformInterface("Popup"),this.jsvpPopupMenu.jpiInitialize(this,
this.isApplet?"appletMenu":"appMenu"),this.jsvpPopupMenu.setEnabled(this.popupAllowMenu,this.popupZoomEnabled)}catch(c){if(y(c,Exception)){JU.Logger.error(c+" initializing popup menu");return}throw c;}this.jsvpPopupMenu.jpiShow(a,b)}},"~N,~N");c(b,"runScriptNow",function(a){System.out.println(this.checkScript(a));var b=a.indexOf("JSpecView:");0<=b&&(a=a.substring(b+10));this.scriptLevelCount++;null==a&&(a="");a=a.trim();if(a.startsWith("!"))a=a.substring(1).trim();else if(a.startsWith(">"))return JU.Logger.error(a),
!0;if(0<=a.indexOf("<PeakData"))return this.syncScript(a),!0;JU.Logger.info("RUNSCRIPT "+a);var b=!0,c=10;a=new JSV.common.ScriptTokenizer(a,!0);for(var e=null;null!=a&&a.hasMoreTokens()&&0<c&&b;){var f=a.nextToken(),g=new JSV.common.ScriptTokenizer(f,!1),j=JSV.common.ScriptToken.getKey(g);if(null!=j){var l=JSV.common.ScriptToken.getScriptToken(j),g=JSV.common.ScriptToken.getValue(l,g,f);try{switch(l){case JSV.common.ScriptToken.UNKNOWN:JU.Logger.info("Unrecognized parameter: "+j);--c;break;default:if(null==
this.selectedPanel)break;this.parameters.set(this.pd(),l,g);this.si.siUpdateBoolean(l,JSV.common.Parameters.isTrue(g));break;case JSV.common.ScriptToken.PEAKCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.SYNCCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.COORDCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.LOADFILECALLBACKFUNCTIONNAME:this.si.siExecSetCallback(l,g);break;case JSV.common.ScriptToken.DEFAULTLOADSCRIPT:g=JU.PT.rep(g,"''",'"');this.defaultLoadScript=0<g.length?g:null;break;case JSV.common.ScriptToken.DEFAULTNMRNORMALIZATION:this.nmrMaxY=
JU.PT.parseFloat(g);break;case JSV.common.ScriptToken.AUTOINTEGRATE:this.autoIntegrate=JSV.common.Parameters.isTrue(g);break;case JSV.common.ScriptToken.CLOSE:this.execClose(g);break;case JSV.common.ScriptToken.DEBUG:JU.Logger.setLogLevel(g.toLowerCase().equals("high")?6:JSV.common.Parameters.isTrue(g)?5:4);break;case JSV.common.ScriptToken.GETPROPERTY:var m=null==this.selectedPanel?null:this.getPropertyAsJavaObject(g);null!=m&&this.selectedPanel.showMessage(JU.PT.toJSON(null,m),g);break;case JSV.common.ScriptToken.HELP:this.execHelp(g);
break;case JSV.common.ScriptToken.HIDDEN:this.si.siExecHidden(JSV.common.Parameters.isTrue(g));break;case JSV.common.ScriptToken.INTEGRATIONRATIOS:this.integrationRatios=g;this.execIntegrate(null);break;case JSV.common.ScriptToken.INTERFACE:this.interfaceOverlaid=this.checkOvelayInterface(g);break;case JSV.common.ScriptToken.INTEGRALOFFSET:case JSV.common.ScriptToken.INTEGRALRANGE:this.execSetIntegralParameter(l,Double.parseDouble(g));break;case JSV.common.ScriptToken.INVERTY:this.execZoom("invertY");
break;case JSV.common.ScriptToken.JMOL:this.syncToJmol(g);break;case JSV.common.ScriptToken.JSV:this.syncScript(JU.PT.trimQuotes(g));break;case JSV.common.ScriptToken.LOAD:if(0==g.length){null!=this.defaultLoadScript&&this.runScriptNow(this.defaultLoadScript);break}this.execLoad(g,(null==this.defaultLoadScript?"":this.defaultLoadScript+";")+a.getRemainingScript());e=null==this.selectedPanel?null:this.si.siLoaded(g);a=null;break;case JSV.common.ScriptToken.LOADIMAGINARY:this.loadImaginary=JSV.common.Parameters.isTrue(g);
break;case JSV.common.ScriptToken.PEAK:this.execPeak(g);break;case JSV.common.ScriptToken.PEAKLIST:this.execPeakList(g);break;case JSV.common.ScriptToken.SCALEBY:this.scaleSelectedBy(this.panelNodes,g);break;case JSV.common.ScriptToken.SCRIPT:if(g.equals("")||g.toLowerCase().startsWith("inline"))this.execScriptInline(g);else{var n=JSV.common.JSVFileManager.getFileAsString(g);null!=n&&100>this.scriptLevelCount&&this.runScriptNow(n)}break;case JSV.common.ScriptToken.SELECT:this.execSelect(g);break;
case JSV.common.ScriptToken.SPECTRUM:case JSV.common.ScriptToken.SPECTRUMNUMBER:this.setSpectrum(g)||(b=!1);break;case JSV.common.ScriptToken.STACKOFFSETY:this.execOverlayOffsetY(JU.PT.parseInt(""+JU.PT.parseFloat(g)));break;case JSV.common.ScriptToken.TEST:this.si.siExecTest(g);break;case JSV.common.ScriptToken.OVERLAY:case JSV.common.ScriptToken.VIEW:this.execView(g,!0);break;case JSV.common.ScriptToken.HIGHLIGHT:b=this.highlight(f);break;case JSV.common.ScriptToken.FINDX:case JSV.common.ScriptToken.GETSOLUTIONCOLOR:case JSV.common.ScriptToken.INTEGRATION:case JSV.common.ScriptToken.INTEGRATE:case JSV.common.ScriptToken.IRMODE:case JSV.common.ScriptToken.LABEL:case JSV.common.ScriptToken.LINK:case JSV.common.ScriptToken.OVERLAYSTACKED:case JSV.common.ScriptToken.PRINT:case JSV.common.ScriptToken.SETPEAK:case JSV.common.ScriptToken.SETX:case JSV.common.ScriptToken.SHIFTX:case JSV.common.ScriptToken.SHOWERRORS:case JSV.common.ScriptToken.SHOWMEASUREMENTS:case JSV.common.ScriptToken.SHOWMENU:case JSV.common.ScriptToken.SHOWPEAKLIST:case JSV.common.ScriptToken.SHOWINTEGRATION:case JSV.common.ScriptToken.SHOWPROPERTIES:case JSV.common.ScriptToken.SHOWSOURCE:case JSV.common.ScriptToken.YSCALE:case JSV.common.ScriptToken.WRITE:case JSV.common.ScriptToken.ZOOM:if(this.isClosed()){b=
!1;break}switch(l){case JSV.common.ScriptToken.FINDX:this.pd().findX(null,Double.parseDouble(g));break;case JSV.common.ScriptToken.GETSOLUTIONCOLOR:this.show("solutioncolor"+g.toLowerCase());break;case JSV.common.ScriptToken.INTEGRATION:case JSV.common.ScriptToken.INTEGRATE:this.execIntegrate(g);break;case JSV.common.ScriptToken.IRMODE:this.execIRMode(g);break;case JSV.common.ScriptToken.LABEL:this.pd().addAnnotation(JSV.common.ScriptToken.getTokens(g));break;case JSV.common.ScriptToken.LINK:this.pd().linkSpectra(JSV.common.PanelData.LinkMode.getMode(g));
break;case JSV.common.ScriptToken.OVERLAYSTACKED:this.pd().splitStack(!JSV.common.Parameters.isTrue(g));break;case JSV.common.ScriptToken.PRINT:e=this.execWrite(null);break;case JSV.common.ScriptToken.SETPEAK:case JSV.common.ScriptToken.SETX:case JSV.common.ScriptToken.SHIFTX:this.execShiftSpectrum(l,f);break;case JSV.common.ScriptToken.SHOWERRORS:this.show("errors");break;case JSV.common.ScriptToken.SHOWINTEGRATION:this.pd().showAnnotation(JSV.common.Annotation.AType.Integration,JSV.common.Parameters.getTFToggle(g));
break;case JSV.common.ScriptToken.SHOWMEASUREMENTS:this.pd().showAnnotation(JSV.common.Annotation.AType.Measurements,JSV.common.Parameters.getTFToggle(g));break;case JSV.common.ScriptToken.SHOWMENU:this.showMenu(-2147483648,0);break;case JSV.common.ScriptToken.SHOWPEAKLIST:this.pd().showAnnotation(JSV.common.Annotation.AType.PeakList,JSV.common.Parameters.getTFToggle(g));break;case JSV.common.ScriptToken.SHOWPROPERTIES:this.show("properties");break;case JSV.common.ScriptToken.SHOWSOURCE:this.show("source");
break;case JSV.common.ScriptToken.YSCALE:this.setYScale(g);break;case JSV.common.ScriptToken.WINDOW:this.si.siNewWindow(JSV.common.Parameters.isTrue(g),!1);break;case JSV.common.ScriptToken.WRITE:e=this.execWrite(g);break;case JSV.common.ScriptToken.ZOOM:b=this.execZoom(g)}}}catch(p){if(y(p,Exception))e=p.toString(),JU.Logger.error(p.toString()),b=!1,--c;else throw p;}}}this.scriptLevelCount--;this.si.siExecScriptComplete(e,!0);return b},"~S");c(b,"execShiftSpectrum",function(a,b){var c=JSV.common.ScriptToken.getTokens(b),
e=NaN,f=NaN;switch(c.size()){case 2:f=c.get(1);f.equals("")&&(f="?");f=f.equalsIgnoreCase("NONE")?1.7976931348623157E308:f.equalsIgnoreCase("?")?NaN:Double.parseDouble(f);break;case 3:e=Double.parseDouble(c.get(1));f=Double.parseDouble(c.get(2));break;default:Double.parseDouble("")}c=0;switch(a){case JSV.common.ScriptToken.SETPEAK:c=1;break;case JSV.common.ScriptToken.SETX:c=2;break;case JSV.common.ScriptToken.SHIFTX:c=3;Double.isNaN(f)&&Double.parseDouble("");break;default:return}this.pd().shiftSpectrum(c,
e,f)},"JSV.common.ScriptToken,~S");c(b,"execClose",function(a){var b=!a.startsWith("!");b||(a=a.substring(1));this.close(JU.PT.trimQuotes(a));(!b||0==this.panelNodes.size())&&this.si.siValidateAndRepaint(!0)},"~S");c(b,"checkOvelayInterface",function(a){return a.equalsIgnoreCase("single")||a.equalsIgnoreCase("overlay")},"~S");c(b,"execPeak",function(a){try{var b=JSV.common.ScriptToken.getTokens(JU.PT.rep(a,"#","INDEX="));a=' type="'+b.get(0).toUpperCase()+'" _match="'+JU.PT.trimQuotes(b.get(1).toUpperCase())+
'"';2<b.size()&&b.get(2).equalsIgnoreCase("all")&&(a+=' title="ALL"');this.processPeakPickEvent(new JSV.common.PeakInfo(a),!1)}catch(c){if(!y(c,Exception))throw c;}},"~S");c(b,"execPeakList",function(a){var b=this.parameters,c=JSV.common.Parameters.getTFToggle(a);if(0>a.indexOf("="))this.isClosed()||this.pd().getPeakListing(null,c);else{var c=JSV.common.ScriptToken.getTokens(a),e=b.peakListThreshold,f=b.peakListInterpolation;try{for(var g=c.size();0<=--g;){var j=c.get(g),l=j.indexOf("=");if(!(0>=
l)){var m=j.substring(0,l);a=j.substring(l+1);m.startsWith("thr")?e=Double.$valueOf(a).doubleValue():m.startsWith("int")&&(f=a.equalsIgnoreCase("none")?"NONE":"parabolic")}}b.peakListThreshold=e;b.peakListInterpolation=f;this.isClosed()||this.pd().getPeakListing(b,Boolean.TRUE)}catch(n){if(!y(n,Exception))throw n;}}},"~S");c(b,"highlight",function(a){var b=JSV.common.ScriptToken.getTokens(a),c=b.size();switch(c){case 3:case 5:case 6:case 7:break;case 2:case 4:if(b.get(c-1).equalsIgnoreCase("OFF"))break;
default:return!1}if(!this.isClosed()){a=JU.PT.parseFloat(1<c?b.get(1):"");var e=JU.PT.parseFloat(2<c?b.get(2):""),f=this.getRGB(3<c?b.get(3):"100"),g=this.getRGB(4<c?b.get(4):"100"),j=this.getRGB(5<c?b.get(5):"100"),b=this.getRGB(6<c?b.get(6):"100");Float.isNaN(a)||Float.isNaN(e)?this.pd().removeAllHighlights():(this.pd().removeHighlight(a,e),0>b&&(b=150),0<=f&&(0<=g&&0<=j)&&this.pd().addHighlight(null,a,e,null,f,g,j,b));this.repaint(!0)}return!0},"~S");c(b,"getRGB",function(a){a=JU.PT.parseFloat(a);
return I(Float.isNaN(a)?-1:1<a?a:255*a)},"~S");c(b,"execZoom",function(a){var b=0,c=0,e=0,f=0;a=JU.PT.rep(a," - "," ").$replace(","," ");a=JSV.common.ScriptToken.getTokens(a);switch(a.size()){default:return!1;case 0:return b=this.pd().getCurrentGraphSet().getCurrentView(),a=Math.round(100*b.minXOnScale)/100+","+Math.round(100*b.maxXOnScale)/100,a=this.selectedPanel.getInput("Enter zoom range x1 x2","Zoom",a),null==a||this.execZoom(a);case 1:return a=a.get(0),a.equalsIgnoreCase("next")?this.pd().nextView():
a.toLowerCase().startsWith("prev")?this.pd().previousView():a.equalsIgnoreCase("out")?this.pd().resetView():a.equalsIgnoreCase("clear")?this.pd().clearAllView():a.equalsIgnoreCase("invertY")&&this.pd().getCurrentGraphSet().invertYAxis(),!0;case 2:b=Double.parseDouble(a.get(0));c=Double.parseDouble(a.get(1));break;case 3:var g=a.get(0);g.equalsIgnoreCase("X")?(b=Double.parseDouble(a.get(1)),c=Double.parseDouble(a.get(2))):g.equalsIgnoreCase("Y")&&(e=Double.parseDouble(a.get(1)),f=Double.parseDouble(a.get(2)));
break;case 4:b=Double.parseDouble(a.get(0)),e=Double.parseDouble(a.get(1)),c=Double.parseDouble(a.get(2)),f=Double.parseDouble(a.get(3))}this.pd().setZoom(b,e,c,f);return!0},"~S");c(b,"scaleSelectedBy",function(a,b){try{for(var c=Double.parseDouble(b),e=a.size();0<=--e;)a.get(e).pd().scaleSelectedBy(c)}catch(f){if(!y(f,Exception))throw f;}},"JU.Lst,~S");c(b,"pd",function(){return null==this.selectedPanel?null:this.selectedPanel.getPanelData()});c(b,"isClosed",function(){return null==this.pd()});c(b,
"execSelect",function(a){if(a.startsWith("ID ")){if(!this.isClosed())try{this.pd().selectSpectrum(null,"ID",JU.PT.trimQuotes(a.substring(3)),!0)}catch(b){if(!y(b,Exception))throw b;}}else{var c=a.equalsIgnoreCase("first"),e=a.equalsIgnoreCase("last");if(c||e)a=this.selectedPanel.getPanelData(),e=a.graphSets,null==e||0==e.size()||(c=e.get(c?0:e.size()-1),a.setCurrentGraphSet(c,-1));else{c=this.panelNodes;for(e=c.size();0<=--e;)c.get(e).pd().selectFromEntireSet(-2147483648);c=new JU.Lst;this.fillSpecList(a,
c,!1)}}},"~S");c(b,"execView",function(a,b){if(a.equals(""))this.checkOverlay();else{var c=new JU.Lst,e=this.fillSpecList(a,c,!0);0<c.size()&&this.si.siOpenDataOrFile(null,e,c,e,-1,-1,!1,null,null);b||this.si.siValidateAndRepaint(!1)}},"~S,~B");c(b,"execIRMode",function(a){for(var b=JSV.common.Spectrum.IRMode.getMode(a),c=this.pd().getSpectrum().dataType,e=this.panelNodes.size();0<=--e;)this.panelNodes.get(e).pd().setIRMode(b,c);this.setIRmode(a)},"~S");c(b,"execIntegrate",function(a){this.isClosed()||
(this.pd().checkIntegral(this.parameters,a),null!=this.integrationRatios&&this.pd().setIntegrationRatios(this.integrationRatios),this.integrationRatios=null,this.repaint(!0))},"~S");c(b,"repaint",function(a){this.selectedPanel.doRepaint(a)},"~B");c(b,"execSetIntegralParameter",function(a,b){var c=this.parameters;switch(a){case JSV.common.ScriptToken.INTEGRALRANGE:c.integralRange=b;break;case JSV.common.ScriptToken.INTEGRALOFFSET:c.integralOffset=b}this.isClosed()||this.pd().checkIntegral(this.parameters,
"update")},"JSV.common.ScriptToken,~N");c(b,"setYScale",function(a){var b=JSV.common.ScriptToken.getTokens(a),c=0,e=!1;1<b.size()&&b.get(0).equalsIgnoreCase("ALL")&&(e=!0,c++);a=Double.parseDouble(b.get(c++));b=Double.parseDouble(b.get(c));if(e){e=this.pd().getSpectrum();for(c=this.panelNodes.size();0<=--c;){var f=this.panelNodes.get(c);f.source===this.currentSource&&JSV.common.Spectrum.areXScalesCompatible(e,f.getSpectrum(),!1,!1)&&f.pd().setZoom(0,a,0,b)}}else this.pd().setZoom(0,a,0,b)},"~S");
c(b,"newStructToJmol",function(a){JU.Logger.info("sending new structure to Jmol:\n"+a);this.syncToJmol("struct:"+a)},"~S");c(b,"sendPanelChange",function(){var a=this.pd(),b=a.getSpectrum(),c=b.getSelectedPeak();null==c&&(c=b.getModelPeakInfoForAutoSelectOnLoad());null==c&&(c=b.getBasePeakInfo());a.addPeakHighlight(c);JU.Logger.info(Thread.currentThread()+"JSViewer sendFrameChange "+this.selectedPanel);this.notifyJmol(c)});c(b,"getPropertyAsJavaObject",function(a){var b=new java.util.Hashtable;if("SOURCEID".equalsIgnoreCase(a))return b.put(a,
null==this.pd()?"":this.pd().getSpectrum().sourceID),b;if(null!=a&&a.startsWith("DATA_"))return b.put(a,""+JSV.common.JSVFileManager.cacheGet(a.substring(5))),b;var c=!1;if(null!=a&&a.toUpperCase().startsWith("ALL ")||"all".equalsIgnoreCase(a))a=a.substring(3).trim(),c=!0;"".equals(a)&&(a=null);if("NAMES".equalsIgnoreCase(a)||"KEYS".equalsIgnoreCase(a))a="";var e=this.pd().getInfo(!0,a);if(!c&&null!=e)return e;null!=e&&b.put("current",e);c=new JU.Lst;for(e=0;e<this.panelNodes.size();e++)null!=this.panelNodes.get(e).jsvp&&
c.addLast(this.panelNodes.get(e).getInfo(a));b.put("items",c);return b},"~S");c(b,"getCoordinate",function(){if(!this.isClosed()){var a=this.pd().getClickedCoordinate();if(null!=a)return a.getXVal()+" "+a.getYVal()}return""});c(b,"fillSpecList",function(a,b,c){var e,f=null,g=a.equalsIgnoreCase("NONE");if(g||a.equalsIgnoreCase("all"))a="*";if(0>a.indexOf("*")){e=a.$plit(" ");a=new JU.SB;for(var j=0;j<e.length;j++){var l=e[j].indexOf(".");l!=e[j].lastIndexOf(".")&&(e[j]=e[j].substring(0,l+1)+e[j].substring(l+
1).$replace(".","_"));a.append(e[j]).append(" ")}a=a.toString().trim()}if(a.equals("*"))e=JSV.common.ScriptToken.getTokens(JSV.common.PanelNode.getSpectrumListAsString(this.panelNodes));else if(a.startsWith('"')||a.startsWith("'"))e=JSV.common.ScriptToken.getTokens(a);else if(a=JU.PT.rep(a,"_"," _ "),a=JU.PT.rep(a,"-"," - "),e=JSV.common.ScriptToken.getTokens(a),f=JSV.common.ScriptToken.getTokens(JSV.common.PanelNode.getSpectrumListAsString(this.panelNodes)),0==f.size())return null;var m=this.isClosed()?
"1.":JSV.common.PanelNode.findNode(this.selectedPanel,this.panelNodes).id,m=m.substring(0,m.indexOf(".")+1);a=new JU.SB;for(var n=e.size(),p=null,j=0;j<n;j++){var q=e.get(j),l=NaN,r=-1;j+1<n&&e.get(j+1).equals("*")?(j+=2,l=Double.parseDouble(e.get(j))):j+1<n&&e.get(j+1).equals("_")&&(j+=2,r=Integer.parseInt(e.get(j)));if(q.equals("-")){null==p&&(p=f.get(0));q=j+1==n?f.get(f.size()-1):e.get(++j);q.contains(".")||(q=m+q);for(l=0;l<f.size()&&!f.get(l).equals(p);)l++;for(l++;l<f.size()&&!p.equals(q);){var s=
JSV.common.PanelNode.findNodeById(p=f.get(l++),this.panelNodes);b.addLast(s.pd().getSpectrumAt(0));a.append(",").append(p)}}else if(q.startsWith("'")&&q.endsWith("'")&&(q='"'+JU.PT.trim(q,"'")+'"'),q.startsWith('"'))for(var q=JU.PT.trim(q,'"'),r=this.panelNodes.size(),u=0;u<r;u++){if(s=this.panelNodes.get(u),null!=s.fileName&&s.fileName.startsWith(q)||null!=s.frameTitle&&s.frameTitle.startsWith(q))this.addSpecToList(s.pd(),l,-1,b,c),a.append(",").append(s.id)}else q.contains(".")||(q=m+q),s=JSV.common.PanelNode.findNodeById(q,
this.panelNodes),null!=s&&(p=q,this.addSpecToList(s.pd(),l,r,b,c),a.append(",").append(q),0<r&&a.append(".").appendI(r))}c&&0<b.size()&&(s=JSV.common.PanelNode.findNodeById(a.substring(1),this.panelNodes),null!=s&&(this.setNode(s),b.clear()));return g?"NONE":0<a.length()?a.toString().substring(1):null},"~S,JU.Lst,~B");c(b,"addSpecToList",function(a,b,c,e,f){f?(a.getSpectrumAt(0).setUserYFactor(Double.isNaN(b)?1:b),a.addToList(c-1,e)):a.selectFromEntireSet(c-1)},"JSV.common.PanelData,~N,~N,JU.Lst,~B");
c(b,"getSolutionColor",function(a){var b=this.pd().getSpectrum(),c=b.canShowSolutionColor()?JSV.common.JSViewer.getInterface("JSV.common.Visible"):null;return null==c?-1:c.getColour(b,a)},"~B");c(b,"openDataOrFile",function(a,b,c,e,f,g,j,l){if("NONE".equals(b))return this.close("View*"),0;this.si.writeStatus("");var m=null,n=null,p=null,q=!1;null!=e&&e.startsWith("cache://")&&(a=Jmol.Cache.get(b=e));var r=null;if(null!=a)try{p=b,n=m=JSV.common.JSVFileManager.getFullPathName(b)}catch(s){if(!y(s,"JSV.exception.JSVException"))throw s;
}else if(null!=c)q=!0,n=p=m="View"+ ++this.nViews;else if(null!=e)try{r=this.apiPlatform.newFile(e),this.recentURL=m=(new java.net.URL(JSV.common.JSVFileManager.appletDocumentBase,e,null)).toString(),p=JSV.common.JSVFileManager.getTagName(m)}catch(u){if(y(u,"java.net.MalformedURLException"))p=r.getName(),n=m=r.getFullPath(),this.recentURL=null;else throw u;}b=-1;if(0<=(b=JSV.common.PanelNode.isOpen(this.panelNodes,m))||0<=(b=JSV.common.PanelNode.isOpen(this.panelNodes,e)))return q?(--this.nViews,
this.setNode(this.panelNodes.get(b))):this.si.writeStatus(m+" is already open"),-1;!j&&!q&&this.close("all");this.si.setCursor(3);try{this.si.siSetCurrentSource(q?JSV.source.JDXSource.createView(c):JSV.source.JDXReader.createJDXSource(r,a,m,this.obscureTitleFromUser===Boolean.TRUE,this.loadImaginary,f,g,this.nmrMaxY))}catch(v){if(y(v,Exception))return alert(v.toString()),this.si.setCursor(0),this.isApplet&&this.selectedPanel.showMessage(v.toString(),"Error Opening File"),-3;throw v;}this.si.setCursor(0);
System.gc();null==n?(n=this.currentSource.getFilePath(),null!=n&&(p=n.substring(n.lastIndexOf("/")+1))):this.currentSource.setFilePath(n);null==l&&!q&&(l=n);null!=l&&this.currentSource.setID(l);this.si.siSetLoaded(p,n);a=this.currentSource.getJDXSpectrum(0);if(null==a)return-4;c=this.currentSource.getSpectra();JSV.common.Spectrum.process(c,this.irMode);c=this.interfaceOverlaid||a.isAutoOverlayFromJmolClick();q||c&&this.currentSource.isCompoundSource?this.combineSpectra(q?e:null):this.splitSpectra();
this.pd().setTaintedAll();q||this.si.siUpdateRecentMenus(m);return 0},"~O,~S,JU.Lst,~S,~N,~N,~B,~S");c(b,"close",function(a){var b=0,c=null==a?-2:a.indexOf(">");0<c&&(b=JU.PT.parseInt(a.substring(c+1).trim()),a=a.substring(0,c).trim());"*".equals(a)&&(a="all");var e="all"===a;if(null==a||0==b&&a.equalsIgnoreCase("all"))this.closeSource(null);else{var f=a.equalsIgnoreCase("views"),c=new JU.Lst;a=a.$replace("\\","/");var g=this.panelNodes.size(),b=g-b;if(a.endsWith("*"))for(a=a.substring(0,a.length-
1);0<=--g;)this.panelNodes.get(g).fileName.startsWith(a)&&c.addLast(this.panelNodes.get(g).source);else if(a.equalsIgnoreCase("selected"))for(a=null;0<=--g;)e=this.panelNodes.get(g).source,this.panelNodes.get(g).isSelected&&(null==a||a!==e)&&c.addLast(e),a=e;else if(e||f||a.equalsIgnoreCase("simulations"))for(a=0;0<=--g&&a<b;){if(e||(f?this.panelNodes.get(g).isView:this.panelNodes.get(g).isSimulation))c.addLast(this.panelNodes.get(g).source),a++}else e=0==a.length?this.currentSource:JSV.common.PanelNode.findSourceByNameOrId(a,
this.panelNodes),null!=e&&c.addLast(e);for(g=c.size();0<=--g;)this.closeSource(c.get(g));null==this.selectedPanel&&0<this.panelNodes.size()&&this.si.siSetSelectedPanel(JSV.common.PanelNode.getLastFileFirstNode(this.panelNodes))}},"~S");c(b,"execLoad",function(a,b){var c=JSV.common.ScriptToken.getTokens(a),e=c.get(0),f=null,g=0;e.equalsIgnoreCase("ID")&&(f=JU.PT.trimQuotes(c.get(1)),e=c.get(2),g=2);var j=e.equalsIgnoreCase("APPEND");j&&(g++,0<g&&(e=c.get(g)));var l=e.equalsIgnoreCase("CHECK");l&&g++;
0<g&&(e=c.get(g));null==b&&(b=this.defaultLoadScript);if(e.equals("?"))this.openFileFromDialog(j,!1,null,b);else if(e.equals("http://?"))this.openFileFromDialog(j,!0,null,null);else if(e.equals("$?")||e.equals("$H1?"))this.openFileFromDialog(j,!0,"H1",null);else if(e.equals("$C13?"))this.openFileFromDialog(j,!0,"C13",null);else{var m=e.equalsIgnoreCase("MOL")||e.equalsIgnoreCase("H1"),n=e.equalsIgnoreCase("C13");if(m||n)e="http://SIMULATION/"+(m?"H1/":"C13/")+"MOL="+JU.PT.trimQuotes(c.get(++g));!l&&
!j&&(e.equals('""')&&null!=this.currentSource&&(e=this.currentSource.getFilePath()),this.close("all"));e=JU.PT.trimQuotes(e);if(l=e.startsWith("$"))!e.startsWith("$H1")&&!e.startsWith("$C13")&&(e="$H1/"+e.substring(1)),e="http://SIMULATION/"+e.substring(1);m=g+1<c.size()?Integer.$valueOf(c.get(++g)).intValue():-1;c=g+1<c.size()?Integer.$valueOf(c.get(++g)).intValue():m;this.si.siOpenDataOrFile(null,null,null,e,m,c,j,b,f);l&&(this.close("views"),this.execView("*",!0))}},"~S,~S");c(b,"combineSpectra",
function(a){for(var b=this.currentSource,c=b.getSpectra(),e=!1,f=c.size();0<=--f;)if(c.get(f).isSimulation){e=!0;break}c=this.si.siGetNewJSVPanel2(c);c.setTitle(b.getTitle());c.getTitle().equals("")&&(c.getPanelData().setViewTitle(""),c.setTitle(a));this.si.siSetPropertiesFromPreferences(c,!0);this.spectraTree.createTree(++this.fileCount,b,B(-1,[c])).getPanelNode().isView=!0;b=JSV.common.PanelNode.findNode(this.selectedPanel,this.panelNodes);b.setFrameTitle(a);b.isView=!0;this.autoShowLegend&&1==
this.pd().getNumberOfGraphSets()&&b.setLegend(this.getDialog(JSV.common.Annotation.AType.OverlayLegend,null));this.si.siSetMenuEnables(b,!1);e&&this.pd().splitStack(!0)},"~S");c(b,"closeSource",function(a){for(var b=this.spectraTree.getRootNode(),c=null==a?null:a.getFilePath(),e=new JU.Lst,b=b.children();b.hasMoreElements();){var f=b.nextElement();if(null==c||f.getPanelNode().source.matchesFilePath(c)){JU.Logger.info("Closing "+f.getPanelNode().source.getFilePath());for(var g=f.children();g.hasMoreElements();){var j=
g.nextElement();e.addLast(j);this.panelNodes.removeObj(j.getPanelNode())}e.addLast(f);if(null!=c)break}}this.spectraTree.deleteNodes(e);null==a&&(null!=this.currentSource&&this.currentSource.dispose(),this.currentSource=null,null!=this.selectedPanel&&this.selectedPanel.dispose());this.currentSource===a&&(this.si.siSetSelectedPanel(null),this.si.siSetCurrentSource(null));for(e=c=0;e<this.panelNodes.size();e++)b=JU.PT.parseFloat(this.panelNodes.get(e).id),b>=c+1&&(c=w(Math.floor(b)));this.fileCount=
c;System.gc();JU.Logger.debugging&&JU.Logger.checkMemory();this.si.siSourceClosed(a)},"JSV.source.JDXSource");c(b,"setFrameAndTreeNode",function(a){null==this.panelNodes||(0>a||a>=this.panelNodes.size())||this.setNode(this.panelNodes.get(a))},"~N");c(b,"selectFrameNode",function(a){a=JSV.common.PanelNode.findNode(a,this.panelNodes);if(null==a)return null;this.spectraTree.setPath(this.spectraTree.newTreePath(a.treeNode.getPath()));return a},"JSV.api.JSVPanel");c(b,"setSpectrum",function(a){if(0<=a.indexOf(".")){a=
JSV.common.PanelNode.findNodeById(a,this.panelNodes);if(null==a)return!1;this.setNode(a)}else{a=JU.PT.parseInt(a);if(0>=a)return this.checkOverlay(),!1;this.setFrameAndTreeNode(a-1)}return!0},"~S");c(b,"splitSpectra",function(){for(var a=this.currentSource,b=a.getSpectra(),c=Array(b.size()),e=null,f=0;f<b.size();f++)e=b.get(f),e=this.si.siGetNewJSVPanel(e),this.si.siSetPropertiesFromPreferences(e,!0),c[f]=e;this.spectraTree.createTree(++this.fileCount,a,c);this.si.siGetNewJSVPanel(null);a=JSV.common.PanelNode.findNode(this.selectedPanel,
this.panelNodes);this.si.siSetMenuEnables(a,!0)});c(b,"selectedTreeNode",function(a){null!=a&&(a.isLeaf()?this.setNode(a.getPanelNode()):System.out.println("not a leaf"),this.si.siSetCurrentSource(a.getPanelNode().source))},"JSV.api.JSVTreeNode");c(b,"dispose",function(){this.fileHelper=null;null!=this.viewDialog&&this.viewDialog.dispose();this.viewDialog=null;null!=this.overlayLegendDialog&&this.overlayLegendDialog.dispose();this.overlayLegendDialog=null;null!=this.jsvpPopupMenu&&(this.jsvpPopupMenu.jpiDispose(),
this.jsvpPopupMenu=null);if(null!=this.panelNodes)for(var a=this.panelNodes.size();0<=--a;)this.panelNodes.get(a).dispose(),this.panelNodes.removeItemAt(a)});c(b,"runScript",function(a){null==this.scriptQueue?this.si.siProcessCommand(a):this.scriptQueue.addLast(a)},"~S");c(b,"requestRepaint",function(){null!=this.selectedPanel&&this.repaintManager.refresh()});c(b,"repaintDone",function(){this.repaintManager.repaintDone()});c(b,"checkOverlay",function(){null!=this.mainPanel&&this.markSelectedPanels(this.panelNodes,
this.mainPanel.getCurrentPanelIndex());this.viewDialog=this.getDialog(JSV.common.Annotation.AType.Views,null)});c(b,"markSelectedPanels",function(a,b){for(var c=a.size();0<=--c;)a.get(c).isSelected=b==c},"JU.Lst,~N");c(b,"execOverlayOffsetY",function(a){if(-2147483648==a){if(null==this.selectedPanel)return;a=this.selectedPanel.getInput("Enter a vertical offset in percent for stacked plots","Overlay",""+this.recentStackPercent);a=JU.PT.parseFloat(a);if(Float.isNaN(a))return;a=I(a)}this.recentStackPercent=
a;this.parameters.viewOffset=a;this.isClosed()&&this.pd().setYStackOffsetPercent(a)},"~N");c(b,"execScriptInline",function(a){0<a.length&&(a=a.substring(6).trim());0==a.length&&(a=this.selectedPanel.getInput("Enter a JSpecView script","Script",this.recentScript));null!=a&&(this.recentScript=a,this.runScriptNow(a))},"~S");c(b,"setDisplay",function(a){this.apiPlatform.setViewer(this,this.display=a);var b=F(2,0);this.apiPlatform.getFullScreenDimensions(a,b);this.setScreenDimension(b[0],b[1])},"~O");
c(b,"setScreenDimension",function(a,b){b=Math.min(b,this.maximumSize);a=Math.min(a,this.maximumSize);this.screenWidth==a&&this.screenHeight==b||this.resizeImage(a,b)},"~N,~N");c(b,"resizeImage",function(a,b){0<a?(this.screenWidth=a,this.screenHeight=b):(a=0==this.screenWidth?this.screenWidth=500:this.screenWidth,b=0==this.screenHeight?this.screenHeight=500:this.screenHeight);this.g2d.setWindowParameters(a,b)},"~N,~N");c(b,"updateJS",function(){null!=this.selectedPanel&&this.selectedPanel.paintComponent(this.apiPlatform.getGraphics(null))});
c(b,"processMouseEvent",function(a,b,c,e,f){return null!=this.selectedPanel&&this.selectedPanel.processMouseEvent(a,b,c,e,f)},"~N,~N,~N,~N,~N");c(b,"processTwoPointGesture",function(a){this.isClosed()||this.selectedPanel.processTwoPointGesture(a)},"~A");c(b,"processKeyEvent",function(a){this.isClosed()||this.selectedPanel.processKeyEvent(a)},"~O");c(b,"getApplet",function(){return this.html5Applet});c(b,"openFileAsyncSpecial",function(a){var b=null==this.currentSource?"NO":this.getDialogManager().getDialogInput(this,
"Do you want to append this file? (Answer NO to replace.)","Drag/Drop Action",3,null,null,"YES");null!=b&&(b=b.toLowerCase().startsWith("y")?"append":"",this.runScript("load "+b+' "'+a+'"'+(""===b?"":"; view *")))},"~S,~N");c(b,"getHeight",function(){return this.screenHeight});c(b,"getWidth",function(){return this.screenWidth});c(b,"getPlatformInterface",function(a){return JSV.common.JSViewer.getInterface("JSV."+(JSV.common.JSViewer.isJS?"js2d.Js":"java.Awt")+a)},"~S");c(b,"getDialogManager",function(){if(null!=
this.dialogManager)return this.dialogManager;this.dialogManager=this.getPlatformInterface("DialogManager");return this.dialogManager.set(this)});c(b,"getDialog",function(a,b){switch(a){case JSV.common.Annotation.AType.Integration:return JSV.common.JSViewer.getInterface("JSV.dialog.IntegrationDialog").setParams("Integration for "+b,this,b);case JSV.common.Annotation.AType.Measurements:return JSV.common.JSViewer.getInterface("JSV.dialog.MeasurementsDialog").setParams("Measurements for "+b,this,b);case JSV.common.Annotation.AType.PeakList:return JSV.common.JSViewer.getInterface("JSV.dialog.PeakListDialog").setParams("Peak List for "+
b,this,b);case JSV.common.Annotation.AType.OverlayLegend:return this.overlayLegendDialog=JSV.common.JSViewer.getInterface("JSV.dialog.OverlayLegendDialog").setParams(this.pd().getViewTitle(),this,null);case JSV.common.Annotation.AType.Views:return this.viewDialog=JSV.common.JSViewer.getInterface("JSV.dialog.ViewsDialog").setParams("View/Combine/Close Spectra",this,null);default:return null}},"JSV.common.Annotation.AType,JSV.common.Spectrum");c(b,"show",function(a){this.getDialogManager();if(a.equals("properties"))this.dialogManager.showProperties(null,
this.pd().getSpectrum());else if(a.equals("errors"))this.dialogManager.showSourceErrors(null,this.currentSource);else if(a.equals("source"))null==this.currentSource?0<this.panelNodes.size()&&this.dialogManager.showMessageDialog(null,"Please Select a Spectrum","Select Spectrum",0):this.dialogManager.showSource(this,this.pd().getSpectrum());else if(a.startsWith("solutioncolorfill"))if(0<=a.indexOf("all"))for(var b=this.panelNodes.size();0<=--b;)this.panelNodes.get(b).pd().setSolutionColor(a);else this.pd().setSolutionColor(a);
else a.startsWith("solutioncolor")&&(a=this.getSolutionColorStr(0>a.indexOf("false")),a="background-color:rgb("+a+")'><br />Predicted Solution Colour- RGB("+a+")<br /><br />",JSV.common.JSViewer.isJS?this.dialogManager.showMessage(this,"<div style='width:100%;height:100%;"+a+"</div>","Predicted Colour"):this.selectedPanel.showMessage("<html><body style='"+a+"</body></html>","Predicted Colour"))},"~S");c(b,"getPrintLayout",function(a){if(!JSV.common.JSViewer.isJS&&this.hasDisplay)try{var b=this.getPlatformInterface("PrintDialog").set(this.parentFrame,
this.lastPrintLayout,a).getPrintLayout();null!=b&&(this.lastPrintLayout=b);return b}catch(c){if(!y(c,Exception))throw c;}return new JSV.common.PrintLayout(this.pd())},"~B");c(b,"setIRmode",function(a){this.irMode=a.equals("AtoT")?JSV.common.Spectrum.IRMode.TO_TRANS:a.equals("TtoA")?JSV.common.Spectrum.IRMode.TO_ABS:JSV.common.Spectrum.IRMode.getMode(a)},"~S");c(b,"getOptionFromDialog",function(a,b,c){return this.getDialogManager().getOptionFromDialog(null,a,this.selectedPanel,b,c)},"~A,~S,~S");c(b,
"print",function(a){return this.execWrite('PDF "'+a+'"')},"~S");c(b,"execWrite",function(a){JSV.common.JSViewer.isJS&&null==a&&(a="PDF");a=JSV.common.JSViewer.getInterface("JSV.export.Exporter").write(this,null==a?null:JSV.common.ScriptToken.getTokens(a),!1);this.si.writeStatus(a);return a},"~S");c(b,"$export",function(a,b){null==a&&(a="XY");var c=this.pd(),e=c.getNumberOfSpectraInCurrentSet();if(-1>b||b>=e)return"Maximum spectrum index (0-based) is "+(e-1)+".";c=0>b?c.getSpectrum():c.getSpectrumAt(b);
try{return JSV.common.JSViewer.getInterface("JSV.export.Exporter").exportTheSpectrum(this,JSV.common.ExportType.getType(a),null,c,0,c.getXYCoords().length-1,null,a.equalsIgnoreCase("PDF"))}catch(f){if(y(f,Exception))return JU.Logger.error(f.toString()),null;throw f;}},"~S,~N");e(b,"postByteArray",function(a,b){return JSV.common.JSVFileManager.postByteArray(a,b)},"~S,~A");c(b,"getOutputChannel",function(a,b){for(;a.startsWith("/");)a=a.substring(1);return(new JU.OC).setParams(this,a,!b,null)},"~S,~B");
b.getInterface=c(b,"getInterface",function(a){try{var b=$._4Name(a);return null==b?null:b.newInstance()}catch(c){if(y(c,Exception))return JU.Logger.error("Interface.java Error creating instance for "+a+": \n"+c),null;throw c;}},"~S");c(b,"showMessage",function(a){null!=this.selectedPanel&&null!=a&&this.selectedPanel.showMessage(a,null)},"~S");c(b,"openFileFromDialog",function(a,b,c,e){var f=null;if(null!=c){f=this.fileHelper.getUrlFromDialog("Enter the name or identifier of a compound",this.recentSimulation);
if(null==f)return!1;this.recentSimulation=f;if(f.equals("<this structure>"))return this.isEmbedded?(this.syncToJmol('sync . "'+c+'Simulate:";'),!0):!1;f="$"+c+"/"+f}else if(b){f=this.fileHelper.getUrlFromDialog("Enter the URL of a JCAMP-DX File",null==this.recentURL?this.recentOpenURL:this.recentURL);if(null==f)return!1;this.recentOpenURL=f}else b=B(-1,[Boolean.$valueOf(a),e]),b=this.fileHelper.showFileOpenDialog(this.mainPanel,b),null!=b&&(f=b.getFullPath());return null!=f?(this.runScriptNow("load "+
(a?"APPEND ":"")+'"'+f+'"'+(null==e?"":";"+e)),!0):!1},"~B,~B,~S,~S");c(b,"openFile",function(a,b){if(b&&null!=this.panelNodes){var c=JSV.common.PanelNode.findSourceByNameOrId((new java.io.File(a)).getAbsolutePath(),this.panelNodes);null!=c&&this.closeSource(c)}this.si.siOpenDataOrFile(null,null,null,a,-1,-1,!0,this.defaultLoadScript,null)},"~S,~B");c(b,"selectPanel",function(a,b){var c=-1;if(null!=b){for(var e=b.size();0<=--e;){var f=b.get(e).jsvp;f===a?c=e:(f.setEnabled(!1),f.setFocusable(!1),f.getPanelData().closeAllDialogsExcept(JSV.common.Annotation.AType.NONE))}this.markSelectedPanels(b,
c);this.selectedPanel=a;null!=a&&a.getPanelData().clearMouseSet(null)}return c},"JSV.api.JSVPanel,JU.Lst");c(b,"checkAutoIntegrate",function(){this.autoIntegrate&&this.pd().integrateAll(this.parameters)});c(b,"parseInitScript",function(a){null==a&&(a="");a=new JSV.common.ScriptTokenizer(a,!0);for(JU.Logger.debugging&&JU.Logger.info("Running in DEBUG mode");a.hasMoreTokens();){var b=a.nextToken(),c=new JSV.common.ScriptTokenizer(b,!1),e=c.nextToken();e.equalsIgnoreCase("SET")&&(e=c.nextToken());var e=
e.toUpperCase(),f=JSV.common.ScriptToken.getScriptToken(e),b=JSV.common.ScriptToken.getValue(f,c,b);JU.Logger.info("KEY-> "+e+" VALUE-> "+b+" : "+f);try{switch(f){default:this.parameters.set(null,f,b);break;case JSV.common.ScriptToken.UNKNOWN:break;case JSV.common.ScriptToken.APPLETID:this.fullName=this.appletName+"__"+(this.appletName=b)+"__";e=null;self.Jmol&&(e=Jmol._applets[b]);this.html5Applet=e;break;case JSV.common.ScriptToken.AUTOINTEGRATE:this.autoIntegrate=JSV.common.Parameters.isTrue(b);
break;case JSV.common.ScriptToken.COMPOUNDMENUON:break;case JSV.common.ScriptToken.APPLETREADYCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.COORDCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.LOADFILECALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.PEAKCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.SYNCCALLBACKFUNCTIONNAME:this.si.siExecSetCallback(f,b);break;case JSV.common.ScriptToken.ENDINDEX:this.initialEndIndex=Integer.parseInt(b);break;case JSV.common.ScriptToken.INTERFACE:this.checkOvelayInterface(b);
break;case JSV.common.ScriptToken.IRMODE:this.setIRmode(b);break;case JSV.common.ScriptToken.MENUON:this.allowMenu=Boolean.parseBoolean(b);break;case JSV.common.ScriptToken.OBSCURE:null==this.obscureTitleFromUser&&(this.obscureTitleFromUser=Boolean.$valueOf(b));break;case JSV.common.ScriptToken.STARTINDEX:this.initialStartIndex=Integer.parseInt(b);break;case JSV.common.ScriptToken.SYNCID:this.fullName=this.appletName+"__"+(this.syncID=b)+"__"}}catch(g){if(!y(g,Exception))throw g;}}},"~S");c(b,"getSolutionColorStr",
function(a){a=JU.CU.colorPtFromInt(this.getSolutionColor(a),null);return I(a.x)+","+I(a.y)+","+I(a.z)},"~B");c(b,"checkCommandLineForTip",function(a,b,c){var e="\u0001"==a;if(!e&&"\x00"!=a){if("\t"!=a&&("\n"==a||32>a.charCodeAt(0)||126<a.charCodeAt(0)))return null;b+=Character.isISOControl(a)?"":""+a}var f;0<=b.indexOf(";")&&(b=b.substring(b.lastIndexOf(";")+1));for(var g=null;b.startsWith(" ");)b=b.substring(1);if(0==b.length&&!e)f="";else{f=JSV.common.ScriptToken.getTokens(b);if(0==f.size()&&!e)return"";
b=b.endsWith(" ")||1<f.size()&&c;f=JSV.common.ScriptToken.getScriptTokenList(0==f.size()?null:f.get(0),b);switch(f.size()){case 0:f="?";break;case 1:e=f.get(0);f=e.getTip();try{f=0<=f.indexOf("TRUE")?" ("+this.parameters.getBoolean(e)+")":0<=e.name().indexOf("COLOR")?" ("+JU.CU.toRGBHexString(this.parameters.getElementColor(e))+")":""}catch(j){if(y(j,Exception))return null;throw j;}if("\t"==a||b||!c){f=e.name()+" "+e.getTip()+f+" "+e.getDescription();"\t"==a&&(g=e.name()+" ");break}f=e.name()+" "+
f;break;default:f=JSV.common.ScriptToken.getNameList(f)}}c?this.si.writeStatus(f):g=f;return g},"~S,~S,~B");c(b,"checkScript",function(a){return this.checkCommandLineForTip("\x00",a,!1)},"~S");c(b,"execHelp",function(a){var b=this.checkCommandLineForTip("\u0001",a,!1);if(0>b.indexOf(" ")&&0<b.indexOf(",")){var c=JU.PT.split(b,",");java.util.Arrays.sort(c);for(var b="",e=0;e<c.length;e++)var f=JSV.common.ScriptToken.getScriptToken(c[e]),b=b+(c[e]+" "+f.getTip()+"\n  "+f.getDescription()+"\n\n");this.getDialogManager().showMessage(null,
b,"HELP "+a)}else this.selectedPanel.showMessage(b,"Help "+a);System.out.println(b)},"~S");c(b,"setRecentSimulation",function(a){null==a&&(a="<this structure>");this.recentSimulation=a},"~S");c(b,"setCreatingImage",function(a){this.pd().creatingImage=a},"~B");c(b,"checkFileAlreadyLoaded",function(a){if(this.isClosed())return!1;if(this.pd().hasFileLoaded(a))return!0;for(var b=this.panelNodes.size();0<=--b;)if(this.panelNodes.get(b).pd().hasFileLoaded(a))return this.si.siSetSelectedPanel(this.panelNodes.get(b).jsvp),
!0;return!1},"~S");c(b,"processPeakPickEvent",function(a){if(C(a,"JSV.common.PeakInfo")){var b=this.pd().findMatchingPeakInfo(a);if(null==b){if(!"ALL".equals(a.getTitle()))return;for(var c=null,e=0;e<this.panelNodes.size();e++)if(null!=(b=this.panelNodes.get(e).pd().findMatchingPeakInfo(a))){c=this.panelNodes.get(e);break}if(null==c)return;this.setNode(c)}a=b}else this.si.siSetSelectedPanel(a.getSource()),a=a.getPeakInfo();this.pd().addPeakHighlight(a);this.notifyJmol(a);a.isClearAll()?this.repaint(!1):
this.pd().selectSpectrum(a.getFilePath(),a.getType(),a.getModel(),!0);this.si.siCheckCallbacks(a.getTitle())},"~O,~B");c(b,"syncScript",function(a){JSV.common.SyncManager.syncFromJmol(this,a)},"~S");c(b,"syncToJmol",function(a){this.si.syncToJmol(a)},"~S");c(b,"notifyJmol",function(a){this.repaint(!0);JSV.common.SyncManager.syncToJmol(this,a)},"JSV.common.PeakInfo");b.isJS=!1;b.isSwingJS=!1;b.jsmolObject=null});r("JSV.common");v(["JSV.common.Annotation","$.Coordinate"],"JSV.common.Measurement",null,
function(){var b=p(function(){this.pt2=null;this.value=0;q(this,arguments)},JSV.common,"Measurement",JSV.common.Annotation);K(b,function(){this.pt2=new JSV.common.Coordinate});c(b,"setM1",function(a,b,c){this.setA(a,b,c,"",!1,!1,0,6);this.setPt2(this.getXVal(),this.getYVal());return this},"~N,~N,JSV.common.Spectrum");c(b,"copyM",function(){var a=new JSV.common.Measurement;a.setA(this.getXVal(),this.getYVal(),this.spec,this.text,!1,!1,this.offsetX,this.offsetY);a.setPt2(this.pt2.getXVal(),this.pt2.getYVal());
return a});c(b,"setPt2",function(a,b){this.spec=a;b&&this.setPt2(this.getXVal(),this.getYVal());return this},"JSV.common.Spectrum,~B");c(b,"setPt2",function(a,b){this.pt2.setXVal(a);this.pt2.setYVal(b);this.value=Math.abs(a-this.getXVal());this.text=this.spec.setMeasurementText(this)},"~N,~N");c(b,"getSpectrum",function(){return this.spec});c(b,"setValue",function(a){this.value=a;this.text=this.spec.setMeasurementText(this)},"~N");c(b,"getValue",function(){return this.value});c(b,"getXVal2",function(){return this.pt2.getXVal()});
c(b,"getYVal2",function(){return this.pt2.getYVal()});e(b,"addSpecShift",function(a){this.setXVal(this.getXVal()+a);this.pt2.setXVal(this.pt2.getXVal()+a)},"~N");c(b,"setYVal2",function(a){this.pt2.setYVal(a)},"~N");c(b,"overlaps",function(a,b){return Math.min(this.getXVal(),this.getXVal2())<Math.max(a,b)&&Math.max(this.getXVal(),this.getXVal2())>Math.min(a,b)},"~N,~N");e(b,"toString",function(){return"["+this.getXVal()+","+this.pt2.getXVal()+"]"})});r("JSV.common");v(["JU.Lst","JSV.api.AnnotationData"],
"JSV.common.MeasurementData",["JU.AU","$.DF","JSV.common.Annotation","$.Parameters"],function(){var b=p(function(){this.units=this.spec=this.type=null;this.precision=0;this.myParams=null;this.isON=!0;this.key=null;q(this,arguments)},JSV.common,"MeasurementData",JU.Lst,JSV.api.AnnotationData);n(b,function(a,b){A(this,JSV.common.MeasurementData,[]);this.type=a;this.spec=b;this.myParams=(new JSV.common.Parameters).setName("MeasurementData")},"JSV.common.Annotation.AType,JSV.common.Spectrum");c(b,"getMeasurements",
function(){return this});e(b,"getAType",function(){return this.type});e(b,"getState",function(){return this.isON});e(b,"setState",function(a){this.isON=a},"~B");c(b,"setMeasurements",function(){},"JU.Lst");e(b,"getParameters",function(){return this.myParams});c(b,"getDataHeader",function(){return JSV.common.MeasurementData.HEADER});c(b,"getMeasurementListArray",function(a){this.units=a;var b=this.getMeasurementListArrayReal(a),c=this.spec.isNMR()?4:2;a=this.spec.isHNMR()&&a.equals("ppm")?4:2;for(var e=
Array(this.size()),f=this.size();0<=--f;)e[f]=B(-1,[""+(f+1),JU.DF.formatDecimalDbl(b[f][0],c),JU.DF.formatDecimalDbl(b[f][1],c),JU.DF.formatDecimalDbl(b[f][2],a)]);return e},"~S");c(b,"getMeasurementListArrayReal",function(a){a=this.spec.isNMR()&&a.equalsIgnoreCase("HZ");for(var b=JU.AU.newDouble2(this.size()),c=0,e=this.size();0<=--e;){var f=this.get(e).getValue();a&&(f*=this.spec.getObservedFreq());b[c++]=O(-1,[this.get(e).getXVal(),this.get(e).getXVal2(),f])}return b},"~S");b.checkParameters=
c(b,"checkParameters",function(a,b){if(0==a.size())return!1;var c=a.getParameters();switch(a.getAType()){case JSV.common.Annotation.AType.PeakList:return b.peakListInterpolation.equals(c.peakListInterpolation)&&b.peakListThreshold==c.peakListThreshold}return!1},"JSV.common.MeasurementData,JSV.common.ColorParameters");e(b,"getSpectrum",function(){return this.spec});e(b,"getData",function(){return this});c(b,"clear",function(a,b){for(var c=this.size();0<=--c;){var e=this.get(c);(0==e.text.length||e.overlaps(a,
b))&&this.removeItemAt(c)}},"~N,~N");c(b,"find",function(a){for(var b=this.size();0<=--b;)if(this.get(b).overlaps(a,a))return b;return-1},"~N");e(b,"setSpecShift",function(a){for(var b=this.size();0<=--b;){var c=this.get(b),e=c.getXVal()+a;c.setXVal(e);c.setValue(e);c.text=JU.DF.formatDecimalDbl(e,this.precision)}},"~N");e(b,"getGraphSetKey",function(){return this.key});e(b,"setGraphSetKey",function(a){this.key=a},"~S");e(b,"isVisible",function(){return!0});c(b,"getInfo",function(a){a.put("header",
this.getDataHeader());a.put("table",this.getMeasurementListArrayReal("ppm"));null!=this.units&&a.put("units",this.units)},"java.util.Map");e(b,"isDialog",function(){return!1});b.HEADER=B(-1,["","start","end","value"])});r("JSV.common");v(["java.lang.Enum","J.api.EventManager","java.util.Hashtable","JU.Lst"],"JSV.common.PanelData","JU.CU JSV.common.Annotation $.Coordinate $.GraphSet $.JSVFileManager $.JSVersion $.JSViewer $.MeasurementData $.Parameters $.PeakPickEvent $.ScriptToken $.Spectrum $.SubSpecChangeEvent $.ZoomEvent JU.Font $.Logger".split(" "),
function(){var b=p(function(){this.graphSets=this.jsvp=this.options=this.currentGraphSet=this.listeners=this.vwr=this.g2d0=this.g2d=null;this.currentSplitPoint=0;this.coordsClicked=this.coordClicked=this.thisWidget=null;this.isIntegralDrag=this.drawXAxisLeftToRight=this.shiftPressed=this.ctrlPressed=!1;this.xAxisLeftToRight=!0;this.scalingFactor=1;this.integralShiftMode=0;this.left=60;this.right=50;this.coordStr="";this.startupPinTip="Click to set.";this.title=null;this.endIndex=this.startIndex=this.thisHeight=
this.thisWidth=this.nSpectra=this.clickCount=0;this.titleFontName=this.displayFontName=this.viewTitle=this.commonFilePath=null;this.creatingImage=this.isPrinting=!1;this.doReset=!0;this.printingFontName=null;this.printGraphPosition="default";this.isLinked=this.display1D=this.titleDrawn=!1;this.spectra=this.printJobTitle=null;this.taintedAll=!0;this.testingJavaScript=!1;this.mouseState=this.currentFont=null;this.peakTabsOn=this.titleOn=this.gridOn=!0;this.mouseY=this.mouseX=0;this.mousePeak=this.mouseSet=
null;this.linking=!1;this.xPixelClicked=0;this.gMain=this.optionsSaved=this.bgcolor=this.BLACK=this.zoomBoxColor2=this.zoomBoxColor=this.highlightColor=this.unitsColor=this.titleColor=this.scaleColor=this.plotAreaColor=this.peakOverColor=this.peakTabColor=this.integralPlotColor=this.gridColor=this.coordinatesColor=null;this.unitsDrawn=!1;q(this,arguments)},JSV.common,"PanelData",null,J.api.EventManager);K(b,function(){this.listeners=new JU.Lst;this.options=new java.util.Hashtable});n(b,function(a,
b){this.vwr=b;this.jsvp=a;this.g2d=this.g2d0=b.g2d;this.BLACK=this.g2d.getColor1(0);this.highlightColor=this.g2d.getColor4(255,0,0,200);this.zoomBoxColor=this.g2d.getColor4(150,150,100,130);this.zoomBoxColor2=this.g2d.getColor4(150,100,100,130)},"JSV.api.JSVPanel,JSV.common.JSViewer");c(b,"addListener",function(a){this.listeners.contains(a)||this.listeners.addLast(a)},"JSV.api.PanelListener");c(b,"getCurrentGraphSet",function(){return this.currentGraphSet});c(b,"dispose",function(){this.jsvp=null;
for(var a=0;a<this.graphSets.size();a++)this.graphSets.get(a).dispose();this.listeners=this.options=this.thisWidget=this.coordsClicked=this.coordClicked=this.currentGraphSet=this.currentFont=this.graphSets=null});c(b,"setViewTitle",function(a){this.viewTitle=a},"~S");c(b,"getViewTitle",function(){return null==this.viewTitle?this.getTitle():this.viewTitle});c(b,"getInfo",function(a,b){var c=new java.util.Hashtable,e=null;if(a)return this.currentGraphSet.getInfo(b,this.getCurrentSpectrumIndex());var f=
this.options.entrySet();if("".equals(b)){for(var e="type title nSets ",g,f=f.iterator();f.hasNext()&&((g=f.next())||1);)e+=g.getKey().name()+" ";c.put("KEYS",e)}else{for(f=f.iterator();f.hasNext()&&((g=f.next())||1);)JSV.common.Parameters.putInfo(b,c,g.getKey().name(),g.getValue());JSV.common.Parameters.putInfo(b,c,"type",this.getSpectrumAt(0).getDataType());JSV.common.Parameters.putInfo(b,c,"title",this.title);JSV.common.Parameters.putInfo(b,c,"nSets",Integer.$valueOf(this.graphSets.size()))}e=new JU.Lst;
for(g=this.graphSets.size();0<=--g;)e.addLast(this.graphSets.get(g).getInfo(b,-1));c.put("sets",e);return c},"~B,~S");c(b,"setBooleans",function(a,b){if(null==b)for(var c,e=a.getBooleans().entrySet().iterator();e.hasNext()&&((c=e.next())||1);)this.setBooleans(a,c.getKey());else this.setBoolean(b,a.getBoolean(b))},"JSV.common.Parameters,JSV.common.ScriptToken");c(b,"setBoolean",function(a,b){this.setTaintedAll();if(a===JSV.common.ScriptToken.REVERSEPLOT)this.currentGraphSet.setReversePlot(b);else switch(this.options.put(a,
Boolean.$valueOf(b)),a){case JSV.common.ScriptToken.DISPLAY1D:case JSV.common.ScriptToken.DISPLAY2D:this.doReset=!0}},"JSV.common.ScriptToken,~B");c(b,"getBoolean",function(a){if(a===JSV.common.ScriptToken.REVERSEPLOT)return this.currentGraphSet.reversePlot;if(null==this.options)return!1;a=this.options.get(a);return null!=a&&C(a,Boolean)&&a===Boolean.TRUE},"JSV.common.ScriptToken");c(b,"setFontName",function(a,b){switch(a){case JSV.common.ScriptToken.DISPLAYFONTNAME:this.displayFontName=b;break;case JSV.common.ScriptToken.TITLEFONTNAME:this.titleFontName=
b}null!=b&&this.options.put(a,b)},"JSV.common.ScriptToken,~S");c(b,"getDisplay1D",function(){return this.display1D});c(b,"setTaintedAll",function(){this.taintedAll=!0});c(b,"initOne",function(a){this.spectra=new JU.Lst;this.spectra.addLast(a);this.initMany(this.spectra,0,0)},"JSV.common.Spectrum");c(b,"initMany",function(a,b,c){this.startIndex=b;this.endIndex=c;this.nSpectra=a.size();this.spectra=a;this.commonFilePath=a.get(0).getFilePath();for(b=0;b<this.nSpectra;b++)if(!this.commonFilePath.equalsIgnoreCase(a.get(b).getFilePath())){this.commonFilePath=
null;break}this.setGraphSets(JSV.common.PanelData.LinkMode.NONE)},"JU.Lst,~N,~N");c(b,"setGraphSets",function(a){this.graphSets=JSV.common.GraphSet.createGraphSetsAndSetLinkMode(this,this.jsvp,this.spectra,this.startIndex,this.endIndex,a);this.currentGraphSet=this.graphSets.get(0);this.setTitle(this.getSpectrum().getTitleLabel())},"JSV.common.PanelData.LinkMode");c(b,"findMatchingPeakInfo",function(a){for(var b=null,c=0;c<this.graphSets.size()&&null==(b=this.graphSets.get(c).findMatchingPeakInfo(a));c++);
return b},"JSV.common.PeakInfo");c(b,"integrateAll",function(a){for(var b=this.graphSets.size();0<=--b;)this.graphSets.get(b).integrate(-1,a)},"JSV.common.ColorParameters");c(b,"getNumberOfGraphSets",function(){return this.graphSets.size()});c(b,"getTitle",function(){return this.title});c(b,"refresh",function(){this.doReset=!0});c(b,"setTitle",function(a){this.title=a},"~S");c(b,"addAnnotation",function(a){a=this.currentGraphSet.addAnnotation(a,this.getTitle());null!=a&&this.setTitle(a)},"JU.Lst");
c(b,"addPeakHighlight",function(a){for(var b=0;b<this.graphSets.size();b++)this.graphSets.get(b).addPeakHighlight(a)},"JSV.common.PeakInfo");c(b,"selectPeakByFileIndex",function(a,b,c){var e=this.currentGraphSet.selectPeakByFileIndex(a,b,c);if(null==e)for(var f=this.graphSets.size();0<=--f&&!(this.graphSets.get(f)!==this.currentGraphSet&&null!=(e=this.graphSets.get(f).selectPeakByFileIndex(a,b,c))););return e},"~S,~S,~S");c(b,"setPlotColors",function(a){for(var b=this.graphSets.size();0<=--b;)this.graphSets.get(b).setPlotColors(a)},
"~A");c(b,"selectSpectrum",function(a,b,c,e){e&&this.currentGraphSet.selectSpectrum(a,b,c);if("ID".equals(b))this.jumpToSpectrumIndex(this.getCurrentSpectrumIndex(),!0);else for(e=0;e<this.graphSets.size();e++)this.graphSets.get(e)!==this.currentGraphSet&&this.graphSets.get(e).selectSpectrum(a,b,c)},"~S,~S,~S,~B");c(b,"hasFileLoaded",function(a){for(var b=this.graphSets.size();0<=--b;)if(this.graphSets.get(b).hasFileLoaded(a))return!0;return!1},"~S");c(b,"clearAllView",function(){for(var a=this.graphSets.size();0<=
--a;)this.graphSets.get(a).resetViewCompletely()});c(b,"drawGraph",function(a,b,c,e,f,g,j){this.gMain=a;this.display1D=!this.isLinked&&this.getBoolean(JSV.common.ScriptToken.DISPLAY1D);var l=40,m=50,n=this.isPrinting||this.doReset||this.thisWidth!=e||this.thisHeight!=f;n&&this.setTaintedAll();this.taintedAll&&this.g2d.fillBackground(c,this.bgcolor);b!==a&&(this.g2d.fillBackground(b,null),a!==c&&this.g2d.fillBackground(a,null),this.g2d.setStrokeBold(a,!1));this.isPrinting?(l*=3,m*=3,this.scalingFactor=
10,j=!1):j?(m*=2,j=!1):(this.scalingFactor=1,j=!this.creatingImage&&this.getBoolean(JSV.common.ScriptToken.COORDINATESON),this.titleOn=this.getBoolean(JSV.common.ScriptToken.TITLEON),this.gridOn=this.getBoolean(JSV.common.ScriptToken.GRIDON),this.peakTabsOn=this.getBoolean(JSV.common.ScriptToken.PEAKTABSON));var p=this.getBoolean(JSV.common.ScriptToken.POINTSONLY);this.unitsDrawn=this.titleDrawn=this.doReset=!1;this.thisWidth=e;this.thisHeight=f;for(var q=this.graphSets.size();0<=--q;)this.graphSets.get(q).drawGraphSet(a,
b,c,e,f,this.left,this.right,l,m,n,this.taintedAll,p);if(this.isPrinting||this.creatingImage)this.titleDrawn=!0;this.isPrinting&&(this.titleOn&&!this.titleDrawn&&this.taintedAll)&&this.drawTitle(a,(f+20)*this.scalingFactor,e*this.scalingFactor,this.getDrawTitle(!0,-1));j&&null!=this.coordStr&&this.drawCoordinates(b,l,this.thisWidth-this.right,l-20);g&&this.taintedAll&&this.printFilePath(a,this.left,f,null!=this.commonFilePath?this.commonFilePath:1==this.graphSets.size()&&null!=this.currentGraphSet.getTitle(!0)?
this.getSpectrum().getFilePath():null);this.isPrinting&&this.printVersion(a,f);!this.testingJavaScript&&(this.isPrinting||a===b)?this.setTaintedAll():this.taintedAll=!1},"~O,~O,~O,~N,~N,~B,~B");c(b,"drawCoordinates",function(a,b,c,e){this.g2d.setGraphicsColor(a,this.coordinatesColor);b=this.setFont(a,this.jsvp.getWidth(),1,14,!0);this.g2d.drawString(a,this.coordStr,c-b.stringWidth(this.coordStr),e)},"~O,~N,~N,~N");c(b,"setFont",function(a,b,c,e,f){return this.g2d.setFont(a,this.getFont(a,b,c,e,f))},
"~O,~N,~N,~N,~B");c(b,"printFilePath",function(a,b,c,e){if(null!=e){b*=this.scalingFactor;c*=this.scalingFactor;0<e.indexOf("?")&&(e=e.substring(e.indexOf("?")+1));e=e.substring(e.lastIndexOf("/")+1);e=e.substring(e.lastIndexOf("\\")+1);this.g2d.setGraphicsColor(a,this.BLACK);var f=this.setFont(a,1E3,0,9,!0);b!=this.left*this.scalingFactor&&(b-=f.stringWidth(e));this.g2d.drawString(a,e,b,c-f.getHeight())}},"~O,~N,~N,~S");c(b,"printVersion",function(a,b){this.g2d.setGraphicsColor(a,this.BLACK);var c=
this.setFont(a,100,0,12,!0),e=this.jsvp.getApiPlatform().getDateFormat(null)+" JSpecView "+JSV.common.JSVersion.VERSION_SHORT,f=c.stringWidth(e);this.g2d.drawString(a,e,(this.thisWidth-this.right)*this.scalingFactor-f,b*this.scalingFactor+3*c.getHeight())},"~O,~N");c(b,"drawTitle",function(a,b,c,e){var f=this.getFont(a,c,this.isPrinting||this.getBoolean(JSV.common.ScriptToken.TITLEBOLDON)?1:0,14,!0),g=f.stringWidth(e);g>0.5*c&&(f=w(7*c/g),10>f&&(f=10),f=this.getFont(a,c,this.isPrinting||this.getBoolean(JSV.common.ScriptToken.TITLEBOLDON)?
1:0,f,!0));this.g2d.setGraphicsColor(a,this.titleColor);this.setCurrentFont(this.g2d.setFont(a,f));b-=w(f.getHeight()*(this.isPrinting?2:0.4));this.g2d.drawString(a,e,this.isPrinting?this.left*this.scalingFactor:5,b)},"~O,~N,~N,~S");c(b,"setCurrentFont",function(a){this.currentFont=a},"JU.Font");c(b,"getFontHeight",function(){return this.currentFont.getAscent()});c(b,"getStringWidth",function(a){return this.currentFont.stringWidth(a)},"~S");c(b,"selectFromEntireSet",function(a){for(var b=0,c=0;b<
this.graphSets.size();b++)if(-2147483648==a)this.graphSets.get(b).setSelected(-1);else for(var e=this.graphSets.get(b).spectra,f=0;f<e.size();f++,c++)(0>a||a==c)&&this.graphSets.get(b).setSelected(f)},"~N");c(b,"addToList",function(a,b){for(var c=0;c<this.spectra.size();c++)(0>a||c==a)&&b.addLast(this.spectra.get(c))},"~N,JU.Lst");c(b,"scaleSelectedBy",function(a){for(var b=this.graphSets.size();0<=--b;)this.graphSets.get(b).scaleSelectedBy(a)},"~N");c(b,"setCurrentGraphSet",function(a,b){var c=1<
a.nSplit?a.getSplitPoint(b):a.getCurrentSpectrumIndex(),e=this.currentGraphSet!==a,f=e||this.currentSplitPoint!=c;this.currentGraphSet=a;this.currentSplitPoint=c;(e||1<a.nSplit&&f)&&this.setSpectrum(c,!0);if(!e){e=a.checkSpectrumClickedEvent(this.mouseX,this.mouseY,this.clickCount);if(!e)return!1;this.currentSplitPoint=c=a.getCurrentSpectrumIndex();this.setSpectrum(c,!0)}this.jumpToSpectrumIndex(c,e||1<a.nSplit&&f);return e},"JSV.common.GraphSet,~N");c(b,"jumpToSpectrum",function(a){a=this.currentGraphSet.getSpectrumIndex(a);
this.jumpToSpectrumIndex(a,!0)},"JSV.common.Spectrum");c(b,"jumpToSpectrumIndex",function(a,b){if(!(0>a||a>=this.currentGraphSet.nSpectra)){this.currentSplitPoint=a;b&&this.setSpectrum(this.currentSplitPoint,1<this.currentGraphSet.nSplit);var c=this.getSpectrum();this.notifySubSpectrumChange(c.getSubIndex(),c)}},"~N,~B");c(b,"splitStack",function(a){this.currentGraphSet.splitStack(a)},"~B");c(b,"getNumberOfSpectraInCurrentSet",function(){return this.currentGraphSet.nSpectra});c(b,"getSourceID",function(){var a=
this.getSpectrum().sourceID;return null==a?this.getSpectrumAt(0).sourceID:a});c(b,"getStartingPointIndex",function(a){return this.currentGraphSet.viewData.getStartingPointIndex(a)},"~N");c(b,"getEndingPointIndex",function(a){return this.currentGraphSet.viewData.getEndingPointIndex(a)},"~N");c(b,"haveSelectedSpectrum",function(){return this.currentGraphSet.haveSelectedSpectrum()});c(b,"getShowAnnotation",function(a){return this.currentGraphSet.getShowAnnotation(a,-1)},"JSV.common.Annotation.AType");
c(b,"showAnnotation",function(a,b){this.currentGraphSet.setShowAnnotation(a,b)},"JSV.common.Annotation.AType,Boolean");c(b,"setYStackOffsetPercent",function(a){this.currentGraphSet.yStackOffsetPercent=a},"~N");c(b,"setSpectrum",function(a,b){this.currentGraphSet.setSpectrum(a,b)},"~N,~B");c(b,"getSpectrum",function(){return this.currentGraphSet.getSpectrum()});c(b,"setSpecForIRMode",function(a){this.setTaintedAll();var b=this.currentGraphSet.getSpectrum();this.currentGraphSet.setSpectrumJDX(a);for(var c=
0;c<this.spectra.size();c++)this.spectra.get(c)===b&&this.spectra.set(c,a)},"JSV.common.Spectrum");c(b,"isShowAllStacked",function(){return this.currentGraphSet.showAllStacked});c(b,"getCurrentSpectrumIndex",function(){return this.currentGraphSet.getCurrentSpectrumIndex()});c(b,"getSpectrumAt",function(a){return null==this.currentGraphSet?null:this.currentGraphSet.getSpectrumAt(a)},"~N");c(b,"addHighlight",function(a,b,c,e,f,g,j,l){(null==a?this.currentGraphSet:a).addHighlight(b,c,e,this.g2d.getColor4(f,
g,j,l))},"JSV.common.GraphSet,~N,~N,JSV.common.Spectrum,~N,~N,~N,~N");c(b,"removeHighlight",function(a,b){this.currentGraphSet.removeHighlight(a,b)},"~N,~N");c(b,"removeAllHighlights",function(){this.currentGraphSet.removeAllHighlights()});c(b,"setZoom",function(a,b,c,e){this.currentGraphSet.setZoom(a,b,c,e);this.doReset=!0;this.setTaintedAll();this.notifyListeners(new JSV.common.ZoomEvent)},"~N,~N,~N,~N");c(b,"resetView",function(){this.currentGraphSet.resetView()});c(b,"previousView",function(){this.currentGraphSet.previousView()});
c(b,"nextView",function(){this.currentGraphSet.nextView()});c(b,"getSelectedIntegral",function(){return this.currentGraphSet.getSelectedIntegral()});c(b,"advanceSubSpectrum",function(a){this.currentGraphSet.advanceSubSpectrum(a)},"~N");c(b,"setSelectedIntegral",function(a){this.currentGraphSet.setSelectedIntegral(a)},"~N");c(b,"scaleYBy",function(a){this.currentGraphSet.scaleYBy(a)},"~N");c(b,"toPeak",function(a){this.currentGraphSet.toPeak(a)},"~N");c(b,"getClickedCoordinate",function(){return this.coordClicked});
c(b,"getPickedCoordinates",function(a,b){return JSV.common.Coordinate.getPickedCoordinates(this.coordsClicked,this.coordClicked,a,b)},"JSV.common.Coordinate,JSV.common.Coordinate");c(b,"shiftSpectrum",function(a,b,c){return this.currentGraphSet.shiftSpectrum(a,b,c)},"~N,~N,~N");c(b,"findX",function(a,b){this.currentGraphSet.setXPointer(a,b)},"JSV.common.Spectrum,~N");c(b,"setXPointers",function(a,b,c,e){this.currentGraphSet.setXPointer(a,b);this.currentGraphSet.setXPointer2(c,e)},"JSV.common.Spectrum,~N,JSV.common.Spectrum,~N");
c(b,"isCurrentGraphSet",function(a){return a===this.currentGraphSet},"JSV.common.GraphSet");c(b,"repaint",function(){this.jsvp.doRepaint(!1)});c(b,"setToolTipText",function(a){this.jsvp.setToolTipText(a)},"~S");c(b,"setHighlightColor",function(a){this.setColor(JSV.common.ScriptToken.HIGHLIGHTCOLOR,a)},"javajs.api.GenericColor");c(b,"getInput",function(a,b,c){return this.jsvp.getInput(a,b,c)},"~S,~S,~S");c(b,"getFont",function(a,b,c,e,f){e*=this.scalingFactor;f?400>b&&(e=b*e/400):250>b&&(e=b*e/250);
b=this.jsvp.getFontFaceID(this.isPrinting?this.printingFontName:this.displayFontName);return this.currentFont=JU.Font.createFont3D(b,c,e,e,0,this.jsvp.getApiPlatform(),a)},"~O,~N,~N,~N,~B");c(b,"notifySubSpectrumChange",function(a,b){this.notifyListeners(new JSV.common.SubSpecChangeEvent(a,null==b?null:b.getTitleLabel()))},"~N,JSV.common.Spectrum");c(b,"notifyPeakPickedListeners",function(a){null==a&&(a=new JSV.common.PeakPickEvent(this.jsvp,this.coordClicked,this.getSpectrum().getAssociatedPeakInfo(this.xPixelClicked,
this.coordClicked)));this.notifyListeners(a)},"JSV.common.PeakPickEvent");c(b,"notifyListeners",function(a){for(var b=0;b<this.listeners.size();b++)null!=this.listeners.get(b)&&this.listeners.get(b).panelEvent(a)},"~O");c(b,"escapeKeyPressed",function(a){this.currentGraphSet.escapeKeyPressed(a)},"~B");c(b,"hasFocus",function(){return this.jsvp.hasFocus()});c(b,"isMouseUp",function(){return this.mouseState===JSV.common.PanelData.Mouse.UP});c(b,"clearMouseSet",function(a){null==a&&(this.mousePeak=null);
null!=this.mouseSet&&this.mouseSet!==a&&this.mouseSet.mouseMovedEvent(2147483647,0);this.mouseSet=a;null==a&&0<this.graphSets.size()&&(this.mouseSet=a=this.graphSets.get(this.graphSets.size()-1)).setSpectrumMovedTo(a.nSpectra-1)},"JSV.common.GraphSet");c(b,"doMouseMoved",function(a,b){this.mouseX=a;this.mouseY=b;this.mouseState=JSV.common.PanelData.Mouse.UP;this.clickCount=0;var c=JSV.common.GraphSet.findGraphSet(this.graphSets,a,b);null!=c&&(this.clearMouseSet(c),c=c.mouseMovedEvent(a,b),this.mousePeak!==
c&&(this.mousePeak=c,this.setTaintedAll()))},"~N,~N");c(b,"doMouseClicked",function(a,b,c){var e=JSV.common.GraphSet.findGraphSet(this.graphSets,a,b);null!=e&&(this.setCurrentGraphSet(e,b),e.mouseClickedEvent(a,b,this.clickCount,c),this.setTaintedAll(),this.repaint())},"~N,~N,~B");c(b,"doMousePressed",function(a,b){this.mouseState=JSV.common.PanelData.Mouse.DOWN;var c=JSV.common.GraphSet.findGraphSet(this.graphSets,a,b);null!=c&&(this.clearMouseSet(c),this.setCurrentGraphSet(c,b),this.clickCount=
++this.clickCount%3,this.currentGraphSet.mousePressedEvent(a,b,this.clickCount))},"~N,~N");c(b,"doMouseDragged",function(a,b){this.isIntegralDrag=(new Boolean(this.isIntegralDrag|this.ctrlPressed)).valueOf();this.mouseState=JSV.common.PanelData.Mouse.DOWN;JSV.common.GraphSet.findGraphSet(this.graphSets,a,b)===this.currentGraphSet&&(this.currentGraphSet.checkWidgetEvent(a,b,!1)&&this.setTaintedAll(),this.currentGraphSet.mouseMovedEvent(a,b))},"~N,~N");c(b,"doMouseReleased",function(a,b,c){this.mouseState=
JSV.common.PanelData.Mouse.UP;!(null==this.thisWidget&&null==this.currentGraphSet.pendingMeasurement)&&c&&(this.currentGraphSet.mouseReleasedEvent(a,b),this.thisWidget=null,this.isIntegralDrag=!1,this.integralShiftMode=0)},"~N,~N,~B");c(b,"hasCurrentMeasurements",function(a){return this.currentGraphSet.hasCurrentMeasurement(a)},"JSV.common.Annotation.AType");c(b,"getDialog",function(a){return this.currentGraphSet.getDialog(a,-1)},"JSV.common.Annotation.AType");c(b,"addDialog",function(a,b,c){this.currentGraphSet.addDialog(a,
b,c)},"~N,JSV.common.Annotation.AType,JSV.api.AnnotationData");c(b,"getPeakListing",function(a,b){null!=a&&this.currentGraphSet.getPeakListing(-1,a,!0);this.currentGraphSet.setPeakListing(b)},"JSV.common.Parameters,Boolean");c(b,"checkIntegral",function(a,b){this.currentGraphSet.checkIntegralParams(a,b)},"JSV.common.Parameters,~S");c(b,"setIntegrationRatios",function(a){this.currentGraphSet.setIntegrationRatios(a)},"~S");c(b,"getView",function(){return this.currentGraphSet.getCurrentView()});c(b,
"closeAllDialogsExcept",function(a){for(var b=this.graphSets.size();0<=--b;)this.graphSets.get(b).closeDialogsExcept(a)},"JSV.common.Annotation.AType");c(b,"removeDialog",function(a){this.currentGraphSet.removeDialog(a)},"JSV.dialog.JSVDialog");c(b,"normalizeIntegral",function(){var a=this.getSelectedIntegral();if(null!=a){var b=a.text;0==b.length&&(b=""+a.getValue());a=this.getInput("Enter a new value for this integral","Normalize Integral",b);try{this.setSelectedIntegral(Double.parseDouble(a))}catch(c){if(!y(c,
Exception))throw c;}}});c(b,"getDrawTitle",function(a,b){var c=null;a?c=this.printJobTitle:1==this.nSpectra?c=this.getSpectrum().getPeakTitle():0<=b?c=this.getSpectrumAt(b).getPeakTitle():null!=this.viewTitle?(null!=this.currentGraphSet.getTitle(!1)&&(c=this.getSpectrum().getPeakTitle()),null==c&&(c=this.viewTitle)):c=this.jsvp.getTitle().trim();0<=c.indexOf("\n")&&(c=c.substring(0,c.indexOf("\n")).trim());return c},"~B,~N");c(b,"linkSpectra",function(a){a===JSV.common.PanelData.LinkMode.ALL&&(a=
2==this.nSpectra?JSV.common.PanelData.LinkMode.AB:3==this.nSpectra?JSV.common.PanelData.LinkMode.ABC:JSV.common.PanelData.LinkMode.NONE);a!==JSV.common.PanelData.LinkMode.NONE&&a.toString().length!=this.nSpectra||this.setGraphSets(a)},"JSV.common.PanelData.LinkMode");c(b,"doZoomLinked",function(a,b,c,e,f,g){if(!this.linking){this.linking=!0;for(var j=a.getSpectrumAt(0),l=this.graphSets.size();0<=--l;){var m=this.graphSets.get(l);m!==a&&JSV.common.Spectrum.areXScalesCompatible(j,this.graphSets.get(l).getSpectrumAt(0),
!1,!0)&&m.doZoom(b,0,c,0,g,!1,f,!1,e)}this.linking=!1}},"JSV.common.GraphSet,~N,~N,~B,~B,~B");c(b,"clearLinkViews",function(a){if(!this.linking){this.linking=!0;for(var b=a.getSpectrum(),c=this.graphSets.size();0<=--c;){var e=this.graphSets.get(c);e!==a&&JSV.common.Spectrum.areXScalesCompatible(b,this.graphSets.get(c).getSpectrum(),!1,!0)&&e.clearViews()}this.linking=!1}},"JSV.common.GraphSet");c(b,"setlinkedXMove",function(a,b,c){if(!this.linking){this.linking=!0;for(var e=a.getSpectrum(),f=this.graphSets.size();0<=
--f;){var g=this.graphSets.get(f);g!==a&&JSV.common.Spectrum.areXScalesCompatible(e,this.graphSets.get(f).getSpectrum(),!1,!0)&&null==g.imageView&&(c?g.setXPixelMovedTo(1.7976931348623157E308,b,0,0):g.setXPixelMovedTo(b,1.7976931348623157E308,0,0))}this.linking=!1}},"JSV.common.GraphSet,~N,~B");c(b,"set2DCrossHairsLinked",function(a,b,c,e){for(var f=this.graphSets.size();0<=--f;){var g=this.graphSets.get(f);g!==a&&g.set2DXY(b,c,e)}},"JSV.common.GraphSet,~N,~N,~B");c(b,"dialogsToFront",function(a){this.currentGraphSet.dialogsToFront(a)},
"JSV.common.Spectrum");c(b,"setColor",function(a,b){null!=b&&this.options.put(a,JU.CU.toRGBHexString(b));switch(a){case JSV.common.ScriptToken.COORDINATESCOLOR:this.coordinatesColor=b;return;case JSV.common.ScriptToken.HIGHLIGHTCOLOR:this.highlightColor=b.addAlpha(150);return;case JSV.common.ScriptToken.ZOOMBOXCOLOR:this.zoomBoxColor=b;return;case JSV.common.ScriptToken.ZOOMBOXCOLOR2:this.zoomBoxColor2=b;return;case JSV.common.ScriptToken.BACKGROUNDCOLOR:this.jsvp.setBackgroundColor(this.bgcolor=
b);break;case JSV.common.ScriptToken.GRIDCOLOR:this.gridColor=b;break;case JSV.common.ScriptToken.INTEGRALPLOTCOLOR:this.integralPlotColor=b;break;case JSV.common.ScriptToken.PEAKOVERCOLOR:this.peakOverColor=b.addAlpha(30);break;case JSV.common.ScriptToken.PEAKTABCOLOR:this.peakTabColor=b;break;case JSV.common.ScriptToken.PLOTCOLOR:for(var c=this.graphSets.size();0<=--c;)this.graphSets.get(c).setPlotColor0(b);break;case JSV.common.ScriptToken.PLOTAREACOLOR:this.plotAreaColor=b;break;case JSV.common.ScriptToken.SCALECOLOR:this.scaleColor=
b;break;case JSV.common.ScriptToken.TITLECOLOR:this.titleColor=b;break;case JSV.common.ScriptToken.UNITSCOLOR:this.unitsColor=b;break;default:JU.Logger.warn("AwtPanel --- unrecognized color: "+a);return}this.taintedAll=!0},"JSV.common.ScriptToken,javajs.api.GenericColor");c(b,"getColor",function(a){switch(a){default:return JU.Logger.error("awtgraphset missing color "+a),this.BLACK;case JSV.common.ScriptToken.ZOOMBOXCOLOR2:return this.zoomBoxColor2;case JSV.common.ScriptToken.ZOOMBOXCOLOR:return this.zoomBoxColor;
case JSV.common.ScriptToken.HIGHLIGHTCOLOR:return this.highlightColor;case JSV.common.ScriptToken.INTEGRALPLOTCOLOR:return this.integralPlotColor;case JSV.common.ScriptToken.GRIDCOLOR:return this.gridColor;case JSV.common.ScriptToken.PEAKOVERCOLOR:return this.peakOverColor;case JSV.common.ScriptToken.PEAKTABCOLOR:return this.peakTabColor;case JSV.common.ScriptToken.PLOTAREACOLOR:return this.plotAreaColor;case JSV.common.ScriptToken.SCALECOLOR:return this.scaleColor;case JSV.common.ScriptToken.TITLECOLOR:return this.titleColor;
case JSV.common.ScriptToken.UNITSCOLOR:return this.unitsColor}},"JSV.common.ScriptToken");c(b,"getOverlayLegendData",function(){for(var a=this.currentGraphSet.nSpectra,b=Array(a),c=this.getSpectrumAt(0).getFilePath(),e=this.getSpectrumAt(a-1).getFilePath(),c=null!=c&&null!=e&&!c.equals(e),e=0;e<a;e++){var f=Array(3),g=this.getSpectrumAt(e),j=g.getTitle();c&&(j=JSV.common.JSVFileManager.getTagName(g.getFilePath())+" - "+j);g=this.getCurrentPlotColor(e);f[0]=new Integer(e+1);f[1]=g;f[2]=" "+j;b[e]=
f}return b});c(b,"setColorOrFont",function(a,b){if(null==b){for(var c,e=a.elementColors.entrySet().iterator();e.hasNext()&&((c=e.next())||1);)this.setColorOrFont(a,c.getKey());this.setColorOrFont(a,JSV.common.ScriptToken.DISPLAYFONTNAME);this.setColorOrFont(a,JSV.common.ScriptToken.TITLEFONTNAME)}else{switch(b){case JSV.common.ScriptToken.DISPLAYFONTNAME:this.setFontName(b,a.displayFontName);return;case JSV.common.ScriptToken.TITLEFONTNAME:this.setFontName(b,a.titleFontName);return}this.setColor(b,
a.getElementColor(b))}},"JSV.common.ColorParameters,JSV.common.ScriptToken");c(b,"getCurrentPlotColor",function(a){return this.currentGraphSet.getPlotColor(a)},"~N");c(b,"setPrint",function(a,b){null==a?(this.options.putAll(this.optionsSaved),this.optionsSaved=null):(this.printJobTitle=a.title,this.printingFontName=b,this.printGraphPosition=a.position,this.optionsSaved=new java.util.Hashtable,this.optionsSaved.putAll(this.options),this.gridOn=a.showGrid,this.titleOn=a.showTitles,this.setBoolean(JSV.common.ScriptToken.XSCALEON,
a.showXScale),this.setBoolean(JSV.common.ScriptToken.XUNITSON,a.showXScale),this.setBoolean(JSV.common.ScriptToken.YSCALEON,a.showYScale),this.setBoolean(JSV.common.ScriptToken.YUNITSON,a.showYScale))},"JSV.common.PrintLayout,~S");c(b,"setDefaultPrintOptions",function(a){a.showGrid=this.gridOn;a.showXScale=this.getBoolean(JSV.common.ScriptToken.XSCALEON);a.showYScale=this.getBoolean(JSV.common.ScriptToken.YSCALEON);a.showTitles=this.titleOn},"JSV.common.PrintLayout");c(b,"showDialog",function(a){var b=
this.getDialog(a);this.closeAllDialogsExcept(a);if(null!=b&&C(b,"JSV.dialog.JSVDialog"))return b.reEnable();var c=this.getCurrentSpectrumIndex();if(0>c)return this.jsvp.showMessage("To enable "+a+" first select a spectrum by clicking on it.",""+a),null;var e=this.getSpectrum(),f=this.vwr.getDialog(a,e);null==b&&a===JSV.common.Annotation.AType.Measurements&&(b=new JSV.common.MeasurementData(JSV.common.Annotation.AType.Measurements,e));null!=b&&f.setData(b);this.addDialog(c,a,f);f.reEnable();return f},
"JSV.common.Annotation.AType");c(b,"printPdf",function(a,b){var c=!b.layout.equals("landscape");this.print(a,c?b.imageableHeight:b.imageableWidth,c?b.imageableWidth:b.imageableHeight,b.imageableX,b.imageableY,b.paperHeight,b.paperWidth,c,0)},"J.api.GenericGraphics,JSV.common.PrintLayout");c(b,"print",function(a,b,c,e,f,g,j,l,m){if(0!=m)return 1;this.g2d=this.g2d0;this.isPrinting=!0;C(a,"J.api.GenericGraphics")&&(this.g2d=a,a=this.gMain);this.printGraphPosition.equals("default")?l?(b=450,c=280):(b=
280,c=450):this.printGraphPosition.equals("fit to page")||(l?(b=450,c=280,e=w(w(j-c)/2),f=w(w(g-b)/2)):(b=280,c=450,f=w(w(j-280)/2),e=w(w(g-450)/2)));this.setTaintedAll();this.g2d.translateScale(null,e,f,0.1);null==a&&(a=(new java.awt.image.BufferedImage(w(c),w(b),2)).getGraphics());this.drawGraph(a,a,a,w(c),w(b),!1,!1);this.g2d!==this.g2d0&&a!==this.gMain&&a.dispose();this.isPrinting=!1;return 0},"~O,~N,~N,~N,~N,~N,~N,~B,~N");e(b,"keyPressed",function(a,b){if(this.isPrinting)return!1;this.checkKeyControl(a,
!0);switch(a){case 27:case 127:case 8:return this.escapeKeyPressed(27!=a),this.isIntegralDrag=!1,this.setTaintedAll(),this.repaint(),!0}var c=0,e=!1;if(0==b)switch(a){case 37:case 39:this.doMouseMoved(39==a?++this.mouseX:--this.mouseX,this.mouseY);this.repaint();e=!0;break;case 33:case 34:c=33==a?JSV.common.GraphSet.RT2:1/JSV.common.GraphSet.RT2;e=!0;break;case 40:case 38:e=40==a?-1:1,null==this.getSpectrumAt(0).getSubSpectra()?this.notifySubSpectrumChange(e,null):(this.advanceSubSpectrum(e),this.setTaintedAll(),
this.repaint()),e=!0}else if(this.checkMod(a,2))switch(a){case 40:case 38:case 45:case 61:c=61==a||38==a?JSV.common.GraphSet.RT2:1/JSV.common.GraphSet.RT2;e=!0;break;case 37:case 39:this.toPeak(39==a?1:-1),e=!0}0!=c&&(this.scaleYBy(c),this.setTaintedAll(),this.repaint());return e},"~N,~N");e(b,"keyReleased",function(a){this.isPrinting||this.checkKeyControl(a,!1)},"~N");e(b,"keyTyped",function(a,b){if(this.isPrinting)return!1;switch(a){case 110:if(0!=b)break;this.normalizeIntegral();return!0;case 26:if(2!=
b)break;this.previousView();this.setTaintedAll();this.repaint();return!0;case 25:if(2!=b)break;this.nextView();this.setTaintedAll();this.repaint();return!0}return!1},"~N,~N");e(b,"mouseAction",function(a,b,c,e,f,g){if(!this.isPrinting)switch(a){case 4:if(!this.checkMod(g,16))break;this.doMousePressed(c,e);break;case 5:this.doMouseReleased(c,e,this.checkMod(g,16));this.setTaintedAll();this.repaint();break;case 1:this.doMouseDragged(c,e);this.repaint();break;case 0:this.jsvp.getFocusNow(!1);if(0!=(g&
28)){this.doMouseDragged(c,e);this.repaint();break}this.doMouseMoved(c,e);null!=this.coordStr&&this.repaint();break;case 2:if(this.checkMod(g,4)){this.jsvp.showMenu(c,e);break}this.ctrlPressed=!1;this.doMouseClicked(c,e,this.updateControlPressed(g))}},"~N,~N,~N,~N,~N,~N");c(b,"checkMod",function(a,b){return(a&b)==b},"~N,~N");c(b,"checkKeyControl",function(a,b){switch(a){case 17:case 157:this.ctrlPressed=b;break;case 16:this.shiftPressed=b}},"~N,~B");c(b,"updateControlPressed",function(a){return this.ctrlPressed=
(new Boolean(this.ctrlPressed|(this.checkMod(a,2)||this.checkMod(a,20)))).valueOf()},"~N");e(b,"mouseEnterExit",function(a,b,c,e){if(e)this.thisWidget=null,this.isIntegralDrag=!1,this.integralShiftMode=0;else try{this.jsvp.getFocusNow(!1)}catch(f){if(y(f,Exception))System.out.println("pd "+this+" cannot focus");else throw f;}},"~N,~N,~N,~B");c(b,"setSolutionColor",function(a){var b=0<=a.indexOf("none"),c=0>a.indexOf("false");if(0>a.indexOf("all"))b=b?-1:this.vwr.getSolutionColor(c),this.getSpectrum().setFillColor(-1==
b?null:this.vwr.parameters.getColor1(b));else{a=JSV.common.JSViewer.getInterface("JSV.common.Visible");for(var e=this.graphSets.size();0<=--e;)this.graphSets.get(e).setSolutionColor(a,b,c)}},"~S");c(b,"setIRMode",function(a,b){for(var c=this.graphSets.size();0<=--c;)this.graphSets.get(c).setIRMode(a,b)},"JSV.common.Spectrum.IRMode,~S");c(b,"closeSpectrum",function(){this.vwr.close("views");this.vwr.close(this.getSourceID());this.vwr.execView("*",!0)});b=s(JSV.common.PanelData,"LinkMode",Enum);b.getMode=
c(b,"getMode",function(a){if(a.equals("*"))return JSV.common.PanelData.LinkMode.ALL;for(var b,c=0,e=JSV.common.PanelData.LinkMode.values();c<e.length&&((b=e[c])||1);c++)if(b.name().equalsIgnoreCase(a))return b;return JSV.common.PanelData.LinkMode.NONE},"~S");j(b,"ALL",0,[]);j(b,"NONE",1,[]);j(b,"AB",2,[]);j(b,"ABC",3,[]);b=s(JSV.common.PanelData,"Mouse",Enum);j(b,"UP",0,[]);j(b,"DOWN",1,[])});r("JSV.common");v(null,"JSV.common.PanelNode",["JU.SB","JSV.common.Parameters"],function(){var b=p(function(){this.legend=
this.id=this.jsvp=this.fileName=this.source=this.treeNode=null;this.isSimulation=this.isView=this.isSelected=!1;this.frameTitle=null;q(this,arguments)},JSV.common,"PanelNode",null);n(b,function(a,b,c,e){this.id=a;this.source=c;this.fileName=b;this.isSimulation=0<=c.getFilePath().indexOf("http://SIMULATION/");this.jsvp=e;null!=e&&(this.pd().getSpectrumAt(0).setId(a),this.frameTitle=e.getTitle())},"~S,~S,JSV.source.JDXSource,JSV.api.JSVPanel");c(b,"setTreeNode",function(a){this.treeNode=a},"JSV.api.JSVTreeNode");
c(b,"getTreeNode",function(){return this.treeNode});c(b,"dispose",function(){this.source.dispose();null!=this.jsvp&&this.jsvp.dispose();this.legend=this.jsvp=this.source=null});c(b,"pd",function(){return this.jsvp.getPanelData()});c(b,"getSpectrum",function(){return this.pd().getSpectrum()});c(b,"setLegend",function(a){null!=this.legend&&this.legend.dispose();return this.legend=a},"JSV.dialog.JSVDialog");e(b,"toString",function(){return(null==this.id?"":this.id+": ")+(null==this.frameTitle?this.fileName:
this.frameTitle)});b.findSourceByNameOrId=c(b,"findSourceByNameOrId",function(a,b){for(var c=b.size();0<=--c;){var e=b.get(c);if(a.equals(e.id)||a.equals(e.source.getSpectra().get(0).sourceID)||e.source.matchesFilePath(a))return e.source}for(c=b.size();0<=--c;)if(e=b.get(c),a.equals(e.fileName))return e.source;return null},"~S,JU.Lst");b.findNodeById=c(b,"findNodeById",function(a,b){if(null!=a)for(var c=b.size();0<=--c;)if(a.equals(b.get(c).id)||a.equals(b.get(c).frameTitle))return b.get(c);return null},
"~S,JU.Lst");b.findNode=c(b,"findNode",function(a,b){for(var c=b.size();0<=--c;)if(b.get(c).jsvp===a)return b.get(c);return null},"JSV.api.JSVPanel,JU.Lst");b.getSpectrumListAsString=c(b,"getSpectrumListAsString",function(a){for(var b=new JU.SB,c=0;c<a.size();c++){var e=a.get(c);e.isView||b.append(" ").append(e.id)}return b.toString().trim()},"JU.Lst");b.isOpen=c(b,"isOpen",function(a,b){if(null!=b)for(var c=a.size();0<=--c;)if(a.get(c).source.matchesFilePath(b)||b.equals(a.get(c).frameTitle))return c;
return-1},"JU.Lst,~S");c(b,"setFrameTitle",function(a){this.frameTitle=a},"~S");b.getLastFileFirstNode=c(b,"getLastFileFirstNode",function(a){for(var b=a.size(),c=0==b?null:a.get(b-1),b=b-1;0<=--b&&a.get(b).source===c.source;)c=a.get(b);return null==c?null:c.jsvp},"JU.Lst");c(b,"getInfo",function(a){var b=this.pd().getInfo(!1,a);JSV.common.Parameters.putInfo(a,b,"panelId",this.id);JSV.common.Parameters.putInfo(a,b,"panelFileName",this.fileName);JSV.common.Parameters.putInfo(a,b,"panelSource",this.source.getFilePath());
return b},"~S")});r("JSV.common");v(null,"JSV.common.Parameters",["java.util.Hashtable","JSV.common.ScriptToken"],function(){var b=p(function(){this.name=null;this.integralMinY=0.1;this.integralRange=50;this.integralOffset=30;this.integralDrawAll=!1;this.viewOffset=0;this.peakListThreshold=NaN;this.peakListInterpolation="parabolic";this.precision=2;this.htBooleans=null;q(this,arguments)},JSV.common,"Parameters",null);n(b,function(){this.htBooleans=new java.util.Hashtable;this.setBoolean(JSV.common.ScriptToken.TITLEON,
!0);this.setBoolean(JSV.common.ScriptToken.ENABLEZOOM,!0);this.setBoolean(JSV.common.ScriptToken.DISPLAY2D,!0);this.setBoolean(JSV.common.ScriptToken.COORDINATESON,!0);this.setBoolean(JSV.common.ScriptToken.PEAKTABSON,!0);this.setBoolean(JSV.common.ScriptToken.POINTSONLY,!1);this.setBoolean(JSV.common.ScriptToken.GRIDON,!0);this.setBoolean(JSV.common.ScriptToken.XSCALEON,!0);this.setBoolean(JSV.common.ScriptToken.YSCALEON,!0);this.setBoolean(JSV.common.ScriptToken.XUNITSON,!0);this.setBoolean(JSV.common.ScriptToken.YUNITSON,
!0)});c(b,"setName",function(a){this.name=a;return this},"~S");c(b,"getBooleans",function(){return this.htBooleans});c(b,"setBoolean",function(a,b){this.htBooleans.put(a,Boolean.$valueOf(b));return b},"JSV.common.ScriptToken,~B");c(b,"getBoolean",function(a){return Boolean.TRUE===this.htBooleans.get(a)},"JSV.common.ScriptToken");b.isTrue=c(b,"isTrue",function(a){return 0==a.length||Boolean.parseBoolean(a)},"~S");b.getTFToggle=c(b,"getTFToggle",function(a){return a.equalsIgnoreCase("TOGGLE")?null:
JSV.common.Parameters.isTrue(a)?Boolean.TRUE:Boolean.FALSE},"~S");c(b,"setP",function(a,b,c){switch(b){default:return;case JSV.common.ScriptToken.COORDINATESON:case JSV.common.ScriptToken.DISPLAY1D:case JSV.common.ScriptToken.DISPLAY2D:case JSV.common.ScriptToken.ENABLEZOOM:case JSV.common.ScriptToken.GRIDON:case JSV.common.ScriptToken.POINTSONLY:case JSV.common.ScriptToken.PEAKTABSON:case JSV.common.ScriptToken.REVERSEPLOT:case JSV.common.ScriptToken.TITLEON:case JSV.common.ScriptToken.TITLEBOLDON:case JSV.common.ScriptToken.XSCALEON:case JSV.common.ScriptToken.XUNITSON:case JSV.common.ScriptToken.YSCALEON:case JSV.common.ScriptToken.YUNITSON:c=
JSV.common.Parameters.getTFToggle(c);if(null!=c){this.setBoolean(b,c.booleanValue());break}if(null==a)return;c=!a.getBoolean(b);switch(b){case JSV.common.ScriptToken.XSCALEON:this.setBoolean(JSV.common.ScriptToken.XUNITSON,c);a.setBoolean(JSV.common.ScriptToken.XUNITSON,c);break;case JSV.common.ScriptToken.YSCALEON:this.setBoolean(JSV.common.ScriptToken.YUNITSON,c),a.setBoolean(JSV.common.ScriptToken.YUNITSON,c)}this.setBoolean(b,c)}null!=a&&a.setBooleans(this,b)},"JSV.common.PanelData,JSV.common.ScriptToken,~S");
b.isMatch=c(b,"isMatch",function(a,b){return null==a||b.equalsIgnoreCase(a)},"~S,~S");b.putInfo=c(b,"putInfo",function(a,b,c,e){null!=e&&JSV.common.Parameters.isMatch(a,c)&&b.put(null==a?c:a,e)},"~S,java.util.Map,~S,~O")});r("JSV.common");v(["JSV.common.MeasurementData"],"JSV.common.PeakData",["JU.DF","JSV.common.Coordinate","$.PeakPick"],function(){var b=p(function(){this.maxY=this.minY=this.thresh=0;q(this,arguments)},JSV.common,"PeakData",JSV.common.MeasurementData);c(b,"getThresh",function(){return this.thresh});
e(b,"getDataHeader",function(){return this.spec.isHNMR()?JSV.common.PeakData.HNMR_HEADER:B(-1,["peak",this.spec.getXUnits(),this.spec.getYUnits()])});e(b,"getMeasurementListArray",function(){for(var a=Array(this.size()),b=O(-1,[-1E100,1E100,1E100]),c,e=0,f=this.size();0<=--f;e++)c=this.spec.getPeakListArray(this.get(f),b,this.maxY),a[e]=2==c.length?B(-1,[""+(e+1),JU.DF.formatDecimalDbl(c[0],2),JU.DF.formatDecimalDbl(c[1],4)]):B(-1,[""+(e+1),JU.DF.formatDecimalDbl(c[0],4),JU.DF.formatDecimalDbl(c[1],
4),JU.DF.formatDecimalDbl(c[2],2),0==c[3]?"":JU.DF.formatDecimalDbl(c[3],2),0==c[4]?"":JU.DF.formatDecimalDbl(c[4],2),0==c[5]?"":JU.DF.formatDecimalDbl(c[5],2)]);return a},"~S");e(b,"getMeasurementListArrayReal",function(){for(var a=O(this.size(),0),b=O(-1,[-1E100,1E100,1E100]),c=0,e=this.size();0<=--e;c++)a[c]=this.spec.getPeakListArray(this.get(e),b,this.maxY);return a},"~S");c(b,"getInfo",function(a){a.put("interpolation",this.myParams.peakListInterpolation);a.put("threshold",Double.$valueOf(this.myParams.peakListThreshold));
Q(this,JSV.common.PeakData,"getInfo",[a])},"java.util.Map");c(b,"setPeakList",function(a,b,c){this.precision=-2147483648==b?this.spec.getDefaultUnitPrecision():b;var e=this.spec.getXYCoords();if(!(3>e.length)){this.clear();null!=a&&(this.myParams.peakListInterpolation=a.peakListInterpolation,this.myParams.peakListThreshold=a.peakListThreshold);a=this.myParams.peakListInterpolation.equals("parabolic");var f=this.spec.isInverted();this.minY=c.minYOnScale;this.maxY=c.maxYOnScale;var g=c.minXOnScale;
c=c.maxXOnScale;this.thresh=this.myParams.peakListThreshold;Double.isNaN(this.thresh)&&(this.thresh=this.myParams.peakListThreshold=(this.minY+this.maxY)/2);var j=0,l=O(-1,[e[0].getYVal(),j=e[1].getYVal(),0]),m=0;if(f)for(f=2;f<e.length;f++){var n=l[f%3]=e[f].getYVal();if(j<this.thresh&&(l[(f-2)%3]>j&&j<n)&&(j=a?JSV.common.Coordinate.parabolicInterpolation(e,f-1):e[f-1].getXVal(),j>=g||j<=c))if(j=(new JSV.common.PeakPick).setValue(j,n,this.spec,null,0),this.addLast(j),100==++m)break;j=n}else for(f=
2;f<e.length;f++){n=l[f%3]=e[f].getYVal();if(j>this.thresh&&(l[(f-2)%3]<j&&j>n)&&(j=a?JSV.common.Coordinate.parabolicInterpolation(e,f-1):e[f-1].getXVal(),j>=g&&j<=c&&(j=(new JSV.common.PeakPick).setValue(j,n,this.spec,JU.DF.formatDecimalDbl(j,b),j),this.addLast(j),100==++m)))break;j=n}}},"JSV.common.Parameters,~N,JSV.common.ScaleData");b.HNMR_HEADER=B(-1,"peak shift/ppm intens shift/hz diff/hz 2-diff 3-diff".split(" "))});r("JSV.common");v(null,"JSV.common.PeakInfo",["JU.PT"],function(){var b=p(function(){this.px1=
this.px0=this.yMax=this.yMin=this.xMax=this.xMin=0;this.atomKey=this._match=this.spectrum=this.id=this.atoms=this.model=this.title=this.filePathForwardSlash=this.file=this.index=this.type2=this.type=this.stringInfo=null;q(this,arguments)},JSV.common,"PeakInfo",null);n(b,function(a){if(null!=a){this.stringInfo=a;this.type=JU.PT.getQuotedAttribute(a,"type");null==this.type&&(this.type="");this.type=this.type.toUpperCase();var b=this.type.indexOf("/");this.type2=0>b?"":JSV.common.PeakInfo.fixType(this.type.substring(this.type.indexOf("/")+
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this.atomKey=","+this.atoms+",";this.title=JU.PT.getQuotedAttribute(a,"title");this._match=JU.PT.getQuotedAttribute(a,"_match");this.xMax=JU.PT.parseFloat(JU.PT.getQuotedAttribute(a,"xMax"));this.xMin=JU.PT.parseFloat(JU.PT.getQuotedAttribute(a,"xMin"));this.yMax=JU.PT.parseFloat(JU.PT.getQuotedAttribute(a,"yMax"));this.yMin=JU.PT.parseFloat(JU.PT.getQuotedAttribute(a,"yMin"))}},"~S");c(b,"isClearAll",function(){return null==this.spectrum});c(b,"getType",function(){return this.type});c(b,"getAtoms",
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c(b,"getTitle",function(){return this.title});c(b,"checkFileIndex",function(a,b,c){return null!=c?0<=this.atomKey.indexOf(c):b.equals(this.index)&&(a.equals(this.file)||a.equals(this.filePathForwardSlash))},"~S,~S,~S");c(b,"checkFileTypeModel",function(a,b,c){return a.equals(this.file)&&this.checkModel(c)&&this.type.endsWith(b)},"~S,~S,~S");c(b,"checkTypeModel",function(a,b){return this.checkType(a)&&this.checkModel(b)},"~S,~S");c(b,"checkModel",function(a){return null!=a&&a.equals(this.model)},"~S");
c(b,"checkType",function(a){return a.endsWith(this.type)},"~S");c(b,"checkTypeMatch",function(a){return this.checkType(a.type)&&(this.checkId(a._match)||this.checkModel(a._match)||0<=this.title.toUpperCase().indexOf(a._match))},"JSV.common.PeakInfo");c(b,"checkId",function(a){return null==a?!1:null!=this.id&&a.toUpperCase().startsWith("ID=")&&a.substring(3).equals(this.id)||(a=a.toUpperCase()).startsWith("INDEX=")&&a.equals("INDEX="+this.index)||a.startsWith("#=")&&a.equals("#="+this.index)},"~S");
c(b,"getModel",function(){return this.model});c(b,"getFilePath",function(){return this.file});c(b,"autoSelectOnLoad",function(){return this.type.startsWith("GC")});c(b,"setPixelRange",function(a,b){this.px0=a;this.px1=b},"~N,~N");c(b,"checkRange",function(a,b){return(2147483647!=a?this.px0<=a&&this.px1>=a:b>=this.xMin&&b<=this.xMax)?Math.abs(b-this.getX()):1E100},"~N,~N");c(b,"getXPixel",function(){return w((this.px0+this.px1)/2)})});r("JSV.common");v(["JSV.common.Measurement"],"JSV.common.PeakPick",
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(this.maxYOnScale-this.minYOnScale)/(b-1)},"~N,~N,~B");b.copyScaleFactors=c(b,"copyScaleFactors",function(a,b){for(var c=0;c<a.length;c++)b[c].spectrumScaleFactor=a[c].spectrumScaleFactor,b[c].spectrumYRef=a[c].spectrumYRef,b[c].userYFactor=a[c].userYFactor,b[c].specShift=a[c].specShift,b[c].isShiftZoomedY=a[c].isShiftZoomedY},"~A,~A");b.copyYScales=c(b,"copyYScales",function(a,b){for(var c=0;c<a.length;c++)b[c].initMinYOnScale=a[c].initMinYOnScale,b[c].initMaxYOnScale=a[c].initMaxYOnScale,b[c].minY=
a[c].minY,b[c].maxY=a[c].maxY,a[c].isShiftZoomedY&&(b[c].isShiftZoomedY=!0,b[c].minYOnScale=a[c].minYOnScale,b[c].maxYOnScale=a[c].maxYOnScale)},"~A,~A");b.setDataPointIndices=c(b,"setDataPointIndices",function(a,b,c,e,f,g){for(var j=0,l=a.size(),m=0;m<l;m++){var n=a.get(m).getXYCoords();JSV.common.ScaleData.getXRange(m,n,b,c,0,n.length-1,f,g)>=e&&j++}return j==l},"JU.Lst,~N,~N,~N,~A,~A");b.fixScale=c(b,"fixScale",function(a){if(!a.isEmpty())for(;;){for(var b,c=a.entrySet().iterator();c.hasNext()&&
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case JSV.common.ScriptToken.SELECT:case JSV.common.ScriptToken.OVERLAY:case JSV.common.ScriptToken.VIEW:case JSV.common.ScriptToken.ZOOM:return JSV.common.ScriptToken.removeCommandName(c).$replace(","," ").trim()}},"JSV.common.ScriptToken,JSV.common.ScriptTokenizer,~S");b.removeCommandName=c(b,"removeCommandName",function(a){var b=a.indexOf(" ");return 0>b?"":a.substring(b).trim()},"~S");b.getKey=c(b,"getKey",function(a){var b=a.nextToken();if(b.startsWith("#")||b.startsWith("//"))return null;b.equalsIgnoreCase("SET")&&
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return b.toString().substring(1)},"JU.Lst");c(b,"getDescription",function(){return this.description});b.htParams=null;j(b,"UNKNOWN",0,[]);j(b,"APPLETID",1,[]);j(b,"APPLETREADYCALLBACKFUNCTIONNAME",2,[]);j(b,"AUTOINTEGRATE",3,["TF","automatically integrate an NMR spectrum"]);j(b,"BACKGROUNDCOLOR",4,["C","set the background color"]);j(b,"CLOSE",5,["spectrumId or fileName or ALL or VIEWS or SIMULATIONS","close one or more views or simulations"]);j(b,"COMPOUNDMENUON",6,[]);j(b,"COORDCALLBACKFUNCTIONNAME",
7,[]);j(b,"COORDINATESCOLOR",8,["C","set the color of the coordinates shown in the upper right-hand corner"]);j(b,"COORDINATESON",9,["T","turn on or off the coordinates shown in the upper right-hand corner"]);j(b,"DEBUG",10,["TF","turn debugging on and off"]);j(b,"DEFAULTLOADSCRIPT",11,['"script..."',"set the script to be run after each file is loaded"]);j(b,"DEFAULTNMRNORMALIZATION",12,["maxYvalue","set the value to be given the largest peak in an HMR spectrum"]);j(b,"DISPLAYFONTNAME",13,[]);j(b,
"DISPLAY1D",14,["T","turn on or off display of 1D spectra when 1D and 2D spectra are loaded"]);j(b,"DISPLAY2D",15,["T","turn on or off display of the 2D spectrum when 1D and 2D spectra are loaded"]);j(b,"ENABLEZOOM",16,["T","allow or disallow zooming"]);j(b,"ENDINDEX",17,[]);j(b,"FINDX",18,["value","move the vertical-line cursor to a specific x-axis value"]);j(b,"GETPROPERTY",19,["[propertyName] or ALL or NAMES","get a property value or all property values as key/value pairs, or a list of names"]);
j(b,"GETSOLUTIONCOLOR",20,[" FILL or FILLNONE or FILLALL or FILLALLNONE","estimate the solution color for UV/VIS spectra"]);j(b,"GRIDCOLOR",21,["C","color of the grid"]);j(b,"GRIDON",22,["T","turn the grid lines on or off"]);j(b,"HELP",23,["[command]","get this listing or help for a specific command"]);j(b,"HIDDEN",24,[]);j(b,"HIGHLIGHTCOLOR",25,["C","set the highlight color"]);j(b,"HIGHLIGHT",26,["OFF or X1 X2 [OFF] or X1 X2 r g b [a]","turns on or off a highlight color, possibily setting its color, where r g b a are 0-255 or 0.0-1.0"]);
j(b,"INTEGRALOFFSET",27,["percent","sets the integral offset from baseline"]);j(b,"INTEGRALRANGE",28,["percent","sets the height of the total integration"]);j(b,"INTEGRATE",29,["","see INTEGRATION"]);j(b,"INTEGRATION",30,["ON/OFF/TOGGLE/AUTO/CLEAR/MIN value/MARK ppm1-ppm2:norm,ppm3-ppm4,...","show/hide integration or set integrals (1D 1H NMR only)"]);j(b,"INTEGRALPLOTCOLOR",31,["C","color of the integration line"]);j(b,"INTEGRATIONRATIOS",32,["'x:value,x:value,..'","annotate the spectrum with numbers or text at specific x values"]);
j(b,"INTERFACE",33,["SINGLE or OVERLAY","set how multiple spectra are displayed"]);j(b,"INVERTY",34,["","invert the Y axis"]);j(b,"IRMODE",35,["A or T or TOGGLE","set the IR mode to absorption or transmission"]);j(b,"JMOL",36,["...Jmol command...","send a command to Jmol (if present)"]);j(b,"JSV",37,[]);j(b,"LABEL",38,['x y [color and/or "text"]',"add a text label"]);j(b,"LINK",39,["AB or ABC or NONE or ALL","synchronize the crosshair of a 2D spectrum with 1D cursors"]);j(b,"LOAD",40,['[APPEND] "fileName" [first] [last]; use "" for current file; $H1/name or $C13/name for simulation',
"load a specturm"]);j(b,"LOADFILECALLBACKFUNCTIONNAME",41,[]);j(b,"LOADIMAGINARY",42,["TF","set TRUE to load imaginary NMR component"]);j(b,"MENUON",43,[]);j(b,"OBSCURE",44,[]);j(b,"OVERLAY",45,[]);j(b,"OVERLAYSTACKED",46,["TF","whether viewed spectra are shown separately, in a stack"]);j(b,"PEAK",47,["[IR,CNMR,HNMR,MS] [#nnn or ID=xxx or text] [ALL], for example: PEAK HNMR #3","highlights a peak based on its number or title text, optionally checking all loade spectra"]);j(b,"PEAKCALLBACKFUNCTIONNAME",
48,[]);j(b,"PEAKLIST",49,["[THRESHOLD=n] [INTERPOLATE=PARABOLIC or NONE]","creates a peak list based on a threshold value and parabolic or no interpolation"]);j(b,"PEAKOVERCOLOR",50,["C","sets the color of peak backgrounds when moused over"]);j(b,"PEAKTABCOLOR",51,["C","sets the color of peak marks for a peak listing"]);j(b,"PEAKTABSON",52,["T","show peak tabs for simulated spectra"]);j(b,"PLOTAREACOLOR",53,["C","sets the color of the plot background"]);j(b,"PLOTCOLOR",54,["C","sets the color of the graph line"]);
j(b,"PLOTCOLORS",55,["color,color,color,...","sets the colors of multiple plots"]);j(b,"POINTSONLY",56,["TF","show points only for all data"]);j(b,"PRINT",57,["","prints the current spectrum"]);j(b,"REVERSEPLOT",58,["T","reverses the x-axis of a spectrum"]);j(b,"SCALEBY",59,["factor","multiplies the y-scale of the spectrum by a factor"]);j(b,"SCALECOLOR",60,["C","sets the color of the x-axis and y-axis scales"]);j(b,"SCRIPT",61,["filename.jsv","runs a script from a file"]);j(b,"SELECT",62,["spectrumID, spectrumID,...",
"selects one or more spectra based on IDs"]);j(b,"SETPEAK",63,["xNew, xOld xNew, ?, or NONE","sets nearest peak to xOld ppm to a new value; NONE resets (1D NMR only)"]);j(b,"SETX",64,["xNew, xOld xNew, ?, or NONE","sets an old ppm position in the spectrum to a new value; NONE resets (1D NMR only)"]);j(b,"SHIFTX",65,["dx or NONE","shifts the x-axis of a 1D NMR spectrum by the given ppm; NONE resets (1D NMR only)"]);j(b,"SHOWERRORS",66,["shows recent errors"]);j(b,"SHOWINTEGRATION",67,["T","shows an integration listing"]);
j(b,"SHOWMEASUREMENTS",68,["T","shows a listing of measurements"]);j(b,"SHOWMENU",69,["displays the popup menu"]);j(b,"SHOWPEAKLIST",70,["T","shows a listing for peak picking"]);j(b,"SHOWPROPERTIES",71,["displays the header information of a JDX file"]);j(b,"SHOWSOURCE",72,["displays the source JDX file associated with the selected data"]);j(b,"SPECTRUM",73,["id","displays a specific spectrum, where id is a number 1, 2, 3... or a file.spectrum number such as 2.1"]);j(b,"SPECTRUMNUMBER",74,["n","displays the nth spectrum loaded"]);
j(b,"STACKOFFSETY",75,["percent","sets the y-axis offset of stacked spectra"]);j(b,"STARTINDEX",76,[]);j(b,"SYNCCALLBACKFUNCTIONNAME",77,[]);j(b,"SYNCID",78,[]);j(b,"TEST",79,[]);j(b,"TITLEON",80,["T","turns the title in the bottom left corner on or off"]);j(b,"TITLEBOLDON",81,["T","makes the title bold"]);j(b,"TITLECOLOR",82,["C","sets the color of the title"]);j(b,"TITLEFONTNAME",83,["fontName","sets the title font"]);j(b,"UNITSCOLOR",84,["C","sets the color of the x-axis and y-axis units"]);j(b,
"VERSION",85,[]);j(b,"VIEW",86,['spectrumID, spectrumID, ... Example: VIEW 3.1, 3.2  or  VIEW "acetophenone"',"creates a view of one or more spectra"]);j(b,"XSCALEON",87,["T","set FALSE to turn off the x-axis scale"]);j(b,"XUNITSON",88,["T","set FALSE to turn off the x-axis units"]);j(b,"YSCALE",89,["[ALL] lowValue highValue"]);j(b,"YSCALEON",90,["T","set FALSE to turn off the y-axis scale"]);j(b,"YUNITSON",91,["T","set FALSE to turn off the y-axis units"]);j(b,"WINDOW",92,[]);j(b,"WRITE",93,['[XY,DIF,DIFDUP,PAC,FIX,SQZ,AML,CML,JPG,PDF,PNG,SVG] "filename"',
"writes a file in the specified format"]);j(b,"ZOOM",94,["OUT or PREVIOUS or NEXT or x1,x2 or x1,y1 x2,y2","sets the zoom"]);j(b,"ZOOMBOXCOLOR",95,[]);j(b,"ZOOMBOXCOLOR2",96,[])});r("JSV.common");v(null,"JSV.common.ScriptTokenizer",["JU.PT"],function(){var b=p(function(){this.str=null;this.pt=-1;this.len=0;this.isCmd=!1;this.doCheck=!0;q(this,arguments)},JSV.common,"ScriptTokenizer",null);n(b,function(a,b){this.str=a;this.len=a.length;this.isCmd=b},"~S,~B");b.nextStringToken=c(b,"nextStringToken",
function(a,b){var c=a.nextToken();return b&&'"'==c.charAt(0)&&c.endsWith('"')&&1<c.length?JU.PT.trimQuotes(c):c},"JSV.common.ScriptTokenizer,~B");c(b,"nextToken",function(){this.doCheck&&this.hasMoreTokens();for(var a=this.pt,b='"'==this.str.charAt(this.pt);++this.pt<this.len;){switch(this.str.charAt(this.pt).charCodeAt(0)){case 34:if(b){if(this.isCmd){b=!1;continue}this.pt++;break}this.isCmd&&(b=!0);continue;case 32:if(!this.isCmd&&!b)break;continue;case 59:case 10:if(this.isCmd&&!b)break;continue;
default:continue}break}this.doCheck=!0;return this.str.substring(a,this.pt)});c(b,"hasMoreTokens",function(){for(;++this.pt<this.len;){switch(this.str.charAt(this.pt).charCodeAt(0)){case 32:case 59:case 10:continue}break}this.doCheck=!1;return this.pt<this.len});c(b,"getRemainingScript",function(){return this.str.substring(this.pt)})});r("JSV.common");z=p(function(){this.isub=0;this.title=null;q(this,arguments)},JSV.common,"SubSpecChangeEvent",null);n(z,function(b,a){this.isub=b;this.title=a},"~N,~S");
c(z,"isValid",function(){return null!=this.title});c(z,"getSubIndex",function(){return this.isub});e(z,"toString",function(){return this.title});r("JSV.common");v(null,"JSV.common.SyncManager",["JU.PT","$.SB","JSV.common.PanelNode","JU.Logger"],function(){var b=s(JSV.common,"SyncManager",null);b.syncToJmol=c(b,"syncToJmol",function(a,b){a.peakInfoModelSentToJmol=b.getModel();a.si.syncToJmol(JSV.common.SyncManager.jmolSelect(a.pd(),b))},"JSV.common.JSViewer,JSV.common.PeakInfo");b.syncFromJmol=c(b,
"syncFromJmol",function(a,b){b.equals("TEST")&&(b=JSV.common.SyncManager.testScript);if(0>b.indexOf("<PeakData"))b.startsWith("JSVSTR:")?a.si.syncToJmol(b):(a.runScriptNow(b),0<=b.indexOf("#SYNC_PEAKS")&&JSV.common.SyncManager.syncToJmolPeaksAfterSyncScript(a));else{var c=JU.PT.getQuotedAttribute(b,"sourceID"),e,f,g,j,l;if(null==c){g=JU.PT.getQuotedAttribute(b,"file");j=JU.PT.getQuotedAttribute(b,"index");if(null==g||null==j)return;g=JU.PT.rep(g,"#molfile","");f=JU.PT.getQuotedAttribute(b,"model");
c=JU.PT.getQuotedAttribute(b,"src");e=null!=c&&c.startsWith("Jmol")?null:a.peakInfoModelSentToJmol;if(null!=f&&null!=e&&!f.equals(e)){JU.Logger.info("JSV ignoring model "+f+"; should be "+e);return}a.peakInfoModelSentToJmol=null;if(0==a.panelNodes.size()||!a.checkFileAlreadyLoaded(g))JU.Logger.info("file "+g+" not found -- JSViewer closing all and reopening"),a.si.siSyncLoad(g);e=JU.PT.getQuotedAttribute(b,"type");l=null}else g=null,j=f=c,l=","+JU.PT.getQuotedAttribute(b,"atom")+",",e="ID";j=JSV.common.SyncManager.selectPanelByPeak(a,
g,j,l);l=a.pd();l.selectSpectrum(g,e,f,!0);a.si.siSendPanelChange();l.addPeakHighlight(j);a.repaint(!0);(null==c||null!=j&&null!=j.getAtoms())&&a.si.syncToJmol(JSV.common.SyncManager.jmolSelect(a.pd(),j))}},"JSV.common.JSViewer,~S");b.syncToJmolPeaksAfterSyncScript=c(b,"syncToJmolPeaksAfterSyncScript",function(a){var b=a.currentSource;if(null!=b)try{var c="file="+JU.PT.esc(b.getFilePath()),e=b.getSpectra(),f=e.get(e.size()-1).getPeakList(),g=new JU.SB;g.append("[");for(var j=f.size(),b=0;b<j;b++){var l=
f.get(b).toString(),l=l+" "+c;g.append(JU.PT.esc(l));0<b&&g.append(",")}g.append("]");a.si.syncToJmol("Peaks: "+g)}catch(m){if(!y(m,Exception))throw m;}},"JSV.common.JSViewer");b.selectPanelByPeak=c(b,"selectPanelByPeak",function(a,b,c,e){var f=a.panelNodes;if(null==f)return null;for(var g=null,j=f.size();0<=--j;)f.get(j).pd().addPeakHighlight(null);g=a.pd().selectPeakByFileIndex(b,c,e);if(null!=g)a.setNode(JSV.common.PanelNode.findNode(a.selectedPanel,f));else for(j=f.size();0<=--j;){var l=f.get(j);
if(null!=(g=l.pd().selectPeakByFileIndex(b,c,e))){a.setNode(l);break}}return g},"JSV.common.JSViewer,~S,~S,~S");b.jmolSelect=c(b,"jmolSelect",function(a,b){var c="IR".equals(b.getType())||"RAMAN".equals(b.getType())?"vibration ON; selectionHalos OFF;":"vibration OFF; selectionhalos "+(null==b.getAtoms()?"OFF":"ON");return"Select: "+b+' script="'+c+' " sourceID="'+a.getSpectrum().sourceID+'"'},"JSV.common.PanelData,JSV.common.PeakInfo");b.testScript='<PeakData  index="1" title="" model="~1.1" type="1HNMR" xMin="3.2915" xMax="3.2965" atoms="15,16,17,18,19,20" multiplicity="" integral="1"> src="JPECVIEW" file="http://SIMULATION/$caffeine"'});
r("JSV.common");v(null,"JSV.common.ViewData",["JSV.common.Coordinate","$.ScaleData"],function(){var b=p(function(){this.thisScale=this.scaleData=null;this.iThisScale=this.nSpectra=0;this.spectra=null;q(this,arguments)},JSV.common,"ViewData",null);n(b,function(a,b,c,e,f,g,j){this.nSpectra=j?1:a.size();this.scaleData=Array(this.nSpectra);for(j=0;j<this.nSpectra;j++)this.scaleData[j]=new JSV.common.ScaleData(e[j],f[j]);this.init(a,b,c,g)},"JU.Lst,~N,~N,~A,~A,~B,~B");n(b,function(a,b,c,e){this.nSpectra=
a.size();var f=a.get(0).getXYCoords().length;this.scaleData=Array(1);this.scaleData[0]=new JSV.common.ScaleData(0,f-1);this.init(a,b,c,e)},"JU.Lst,~N,~N,~B");c(b,"getScaleData",function(){return this.scaleData});c(b,"getScale",function(){return this.thisScale});c(b,"init",function(a,b,c,e){null==a?a=this.spectra:this.spectra=a;this.thisScale=this.scaleData[this.iThisScale=0];for(var f=0;f<this.scaleData.length;f++)this.scaleData[f].userYFactor=a.get(f).getUserYFactor(),this.scaleData[f].spectrumYRef=
a.get(f).getYRef();this.resetScaleFactors();var g=JSV.common.Coordinate.getMinX(a,this),j=JSV.common.Coordinate.getMaxX(a,this),l=JSV.common.Coordinate.getMinYUser(a,this),m=JSV.common.Coordinate.getMaxYUser(a,this);b!=c&&(l=b,m=c,l>m&&(f=l,l=m,m=f));a=a.get(0).isInverted();for(f=0;f<this.scaleData.length;f++)this.scaleData[f].setMinMax(g,j,l,m),this.scaleData[f].setScale(e,a)},"JU.Lst,~N,~N,~B");c(b,"newSpectrum",function(a){this.init(a,0,0,!1)},"JU.Lst");c(b,"setXRangeForSubSpectrum",function(a){this.setXRange(0,
a,this.scaleData[0].minX,this.scaleData[0].maxX,0,a.length-1)},"~A");c(b,"setXRange",function(a,b,c,e,f,g){for(var j=0,l=0,j=f;j<=g;j++)if(f=b[j].getXVal(),f>=c){this.scaleData[a%this.scaleData.length].startDataPointIndex=j;break}for(;j<=g&&!(f=b[j].getXVal(),l++,f>=e);j++);this.scaleData[a%this.scaleData.length].endDataPointIndex=j;return l},"~N,~A,~N,~N,~N,~N");c(b,"getStartingPointIndex",function(a){return this.scaleData[a%this.scaleData.length].startDataPointIndex},"~N");c(b,"getEndingPointIndex",
function(a){return this.scaleData[a%this.scaleData.length].endDataPointIndex},"~N");c(b,"areYScalesSame",function(a,b){a%=this.scaleData.length;b%=this.scaleData.length;return this.scaleData[a].minYOnScale==this.scaleData[b].minYOnScale&&this.scaleData[a].maxYOnScale==this.scaleData[b].maxYOnScale},"~N,~N");c(b,"setScale",function(a,b,c,e){this.iThisScale=a%this.scaleData.length;this.thisScale=this.scaleData[this.iThisScale];this.thisScale.setXYScale(b,c,e)},"~N,~N,~N,~B");c(b,"resetScaleFactors",
function(){for(var a=0;a<this.scaleData.length;a++)this.scaleData[a].spectrumScaleFactor=1});c(b,"scaleSpectrum",function(a,b){if(!(0>=b||a>=this.nSpectra))if(-2==a)this.thisScale.scale2D(b);else if(0>a)for(a=0;a<this.scaleData.length;a++)this.scaleData[a].scaleBy(b);else this.scaleData[a%this.scaleData.length].scaleBy(b)},"~N,~N");c(b,"getNewScales",function(a,b,c,e){if(b)return this.scaleData;a%=this.scaleData.length;b=(c-this.thisScale.minYOnScale)/(this.thisScale.maxYOnScale-this.thisScale.minYOnScale);
e=(e-this.thisScale.minYOnScale)/(this.thisScale.maxYOnScale-this.thisScale.minYOnScale);c=Array(this.scaleData.length);for(var f=0;f<this.scaleData.length;f++)c[f]=0<=a&&f!=a?this.scaleData[f]:new JSV.common.ScaleData;JSV.common.ScaleData.copyScaleFactors(this.scaleData,c);JSV.common.ScaleData.copyYScales(this.scaleData,c);for(f=0;f<this.scaleData.length;f++)0<=a&&f!=a||(c[f].isShiftZoomedY=!0,c[f].minYOnScale=this.scaleData[f].minYOnScale*(1-b)+b*this.scaleData[f].maxYOnScale,c[f].maxYOnScale=this.scaleData[f].minYOnScale*
(1-e)+e*this.scaleData[f].maxYOnScale);return c},"~N,~B,~N,~N")});r("JSV.common");E(JSV.common,"XYScaleConverter");r("JSV.common");s(JSV.common,"ZoomEvent",null);r("JSV.dialog");v(["JSV.api.AnnotationData","JSV.common.Annotation"],"JSV.dialog.JSVDialog",["JU.DF","$.PT","JSV.common.IntegralData","$.PeakData","JSV.dialog.DialogManager"],function(){var b=p(function(){this.myParams=this.xyData=this.combo1=this.txt3=this.txt2=this.txt1=this.jsvp=this.dialog=this.manager=this.$spec=this.vwr=this.title=
this.type=this.options=this.optionKey=null;this.precision=1;this.showHideButton=this.loc=null;this.defaultVisible=this.isNumeric=this.addApplyBtn=this.addCombo1=this.addClearBtn=!1;this.tableData=this.graphSetKey=this.subType=null;this.addUnits=!1;this.unitPtr=this.formatOptions=this.unitOptions=null;this.isON=!0;this.iSelected=this.iRowColSelected=-1;this.skipCreate=!1;this.iColSelected=this.iRowSelected=-1;q(this,arguments)},JSV.dialog,"JSVDialog",JSV.common.Annotation,JSV.api.AnnotationData);e(b,
"isDialog",function(){return!0});c(b,"setParams",function(a,b,c){this.title=a=JSV.dialog.DialogManager.fixTitle(a);this.vwr=b;this.$spec=c;this.manager=b.getDialogManager();this.jsvp=b.selectedPanel;this.myParams=b.getPlatformInterface("Parameters").setName("dialogParams");this.subType=null==c?"!":c.getTypeLabel();this.optionKey=this.type+"_"+this.subType;this.options=this.manager.getDialogOptions();null!=c&&(a=c.getDefaultAnnotationInfo(this.type),this.options.put(this.optionKey,a),this.unitOptions=
a[0],this.formatOptions=a[1],this.unitPtr=this.options.get(this.optionKey+"_unitPtr"),null==this.unitPtr&&(this.unitPtr=a[2]));switch(this.type){case JSV.common.Annotation.AType.Integration:this.addApplyBtn=this.defaultVisible=this.addClearBtn=this.isNumeric=!0;break;case JSV.common.Annotation.AType.Measurements:this.defaultVisible=this.addCombo1=this.addClearBtn=this.isNumeric=!0;break;case JSV.common.Annotation.AType.PeakList:this.defaultVisible=this.addApplyBtn=this.isNumeric=!0;break;case JSV.common.Annotation.AType.Views:this.defaultVisible=
!0}this.initDialog();return this},"~S,JSV.common.JSViewer,JSV.common.Spectrum");c(b,"initDialog",function(){this.dialog=this.manager.getDialog(this);this.restoreDialogPosition(this.jsvp,this.getPosXY());this.dialog.setTitle(this.title);this.layoutDialog()});c(b,"layoutDialog",function(){this.dialog.startLayout();this.addUniqueControls();this.isNumeric&&(this.getUnitOptions(),this.addCombo1&&(this.combo1=this.dialog.addSelectOption("cmbUnits","Units",this.unitOptions,this.unitPtr.intValue(),this.addUnits)),
this.addApplyBtn&&this.dialog.addButton("btnApply","Apply"),this.showHideButton=this.dialog.addButton("btnShow","Show"),this.addClearBtn&&this.dialog.addButton("btnClear","Clear"));this.dialog.endLayout();this.checkEnables();this.dialog.setVisible(this.defaultVisible)});c(b,"callbackAD",function(a,b){if(a.equals("FOCUS"))this.eventFocus();else if(a.equals("tableSelect"))this.tableSelect(b);else if(a.equals("btnClear"))this.clear();else if(a.equals("btnApply"))this.eventApply();else if(a.equals("btnShow")){var c=
this.dialog.getText(this.showHideButton);this.eventShowHide(c.equals("Show"))}else if(a.equals("cmbUnits"))this.setPrecision(this.dialog.getSelectedIndex(this.combo1));else if(a.startsWith("txt"))this.eventApply();else if(a.equals("windowClosing"))return this.done(),!0;null!=this.jsvp&&this.jsvp.doRepaint(!0);return!0},"~S,~S");c(b,"addUniqueControls",function(){},"JSV.dialog.DialogManager");e(b,"getAType",function(){return this.type});e(b,"getGraphSetKey",function(){return this.graphSetKey});e(b,
"setGraphSetKey",function(a){this.graphSetKey=a},"~S");e(b,"getSpectrum",function(){return this.$spec});e(b,"getState",function(){return this.isON});e(b,"setState",function(a){this.isON=a},"~B");c(b,"checkEnables",function(){var a=this.checkVisible();this.dialog.setText(this.showHideButton,a?"Hide":"Show")});c(b,"createTable",function(a,b,c){this.tableData=a;this.dialog.createTable(a,b,c)},"~A,~A,~A");c(b,"setTableSelectionEnabled",function(a){this.dialog.setCellSelectionEnabled(a)},"~B");c(b,"getParameters",
function(){return this.myParams});c(b,"showMessage",function(a,b,c){this.manager.showMessageDialog(this.dialog,a,b,c)},"~S,~S,~N");c(b,"setThreshold",function(a){this.dialog.setText(this.txt1,this.getThreasholdText(a))},"~N");c(b,"applyFromFields",function(){this.apply(null)});c(b,"reEnable",function(){this.paramsReEnable();return this});c(b,"dispose",function(){this.dialog.dispose()});c(b,"setVisible",function(a){this.dialog.setVisible(a)},"~B");e(b,"isVisible",function(){return this.dialog.isVisible()});
c(b,"selectTableRow",function(a){this.dialog.selectTableRow(a)},"~N");c(b,"repaint",function(){this.dialog.repaint()});c(b,"setFields",function(){switch(this.type){case JSV.common.Annotation.AType.PeakList:this.myParams=this.xyData.getParameters(),this.setThreshold(this.myParams.peakListThreshold),this.dialog.setSelectedIndex(this.combo1,this.myParams.peakListInterpolation.equals("none")?1:0),this.createData()}});c(b,"setFocus",function(a){this.dialog.setFocus(a)},"~B");c(b,"update",function(a,b,
c){this.selectTableRow(-1);switch(this.type){case JSV.common.Annotation.AType.Integration:this.loadData();this.checkEnables();break;case JSV.common.Annotation.AType.Measurements:this.loadData();this.checkEnables();break;case JSV.common.Annotation.AType.PeakList:20<c&&this.applyFromFields();if(null==this.xyData||null==a||20<c)break;c=0;var e=1E100;a=a.getXVal();var f=this.xyData;b=Math.abs(b/20);for(var g=f.size();0<=--g;){var j=Math.abs(a-f.get(g).getXVal());j<e&&(e=j,c=g)}e<b&&(this.selectTableRow(f.size()-
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c=F(-1,[40,65,65,50]);this.createTable(a,b,c);break;case JSV.common.Annotation.AType.PeakList:null==this.xyData&&this.createData();a=this.xyData.getMeasurementListArray(null);b=this.xyData.getDataHeader();c=F(-1,[40,65,50,50,50,50,50]);this.createTable(a,b,c);this.setTableSelectionEnabled(!0);break;case JSV.common.Annotation.AType.OverlayLegend:b=B(-1,["No.","Plot Color","Title"]),a=this.vwr.selectedPanel.getPanelData().getOverlayLegendData(),c=F(-1,[30,60,250]),this.createTable(a,b,c),this.setTableSelectionEnabled(!0)}});
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a.setOwner(this.owner);a.setDataClass(this.dataClass);a.setDataType(this.dataType);a.setHeaderTable(this.headerTable);a.setXFactor(this.xFactor);a.setYFactor(this.yFactor);a.setXUnits(this.xUnits);a.setYUnits(this.yUnits);a.setXLabel(this.xLabel);a.setYLabel(this.yLabel);a.setXYCoords(this.xyCoords);a.setContinuous(this.continuous);a.setIncreasing(this.xIncreases);a.observedFreq=this.observedFreq;a.observedNucl=this.observedNucl;a.fileShiftRef=this.fileShiftRef;a.fileShiftRefDataPt=this.fileShiftRefDataPt;
a.fileShiftRefType=this.fileShiftRefType;a.$isHZtoPPM=this.$isHZtoPPM;a.numDim=this.numDim;a.nucleusX=this.nucleusX;a.nucleusY=this.nucleusY;a.freq2dX=this.freq2dX;a.freq2dY=this.freq2dY;a.setFilePath(this.filePath);a.nH=this.nH},"JSV.source.JDXDataObject");c(b,"getTypeLabel",function(){return this.isNMR()?this.nucleusX+"NMR":this.dataType});c(b,"getDefaultAnnotationInfo",function(a){var b,c=this.isNMR();switch(a){case JSV.common.Annotation.AType.Integration:return B(-1,[null,F(-1,[1]),null]);case JSV.common.Annotation.AType.Measurements:return a=
c?B(-1,["Hz","ppm"]):B(-1,[""]),b=this.isHNMR()?F(-1,[1,4]):F(-1,[1,3]),B(-1,[a,b,Integer.$valueOf(0)]);case JSV.common.Annotation.AType.PeakList:return a=c?B(-1,["Hz","ppm"]):B(-1,[""]),b=this.isHNMR()?F(-1,[1,2]):F(-1,[1,1]),B(-1,[a,b,Integer.$valueOf(c?1:0)])}return null},"JSV.common.Annotation.AType");c(b,"getPeakListArray",function(a,b,c){var e=a.getXVal();a=a.getYVal();this.isNMR()&&(a/=c);c=Math.abs(e-b[0]);b[0]=e;var g=c+b[1];b[1]=c;var j=g+b[2];b[2]=g;return this.isNMR()?O(-1,[e,a,e*this.observedFreq,
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this.applyShiftReference(b?a:1,this.fileShiftRef);this.fileFirstX>this.fileLastX&&JSV.common.Coordinate.reverse(this.xyCoords);b&&(JSV.common.Coordinate.applyScale(this.xyCoords,1/a,1),this.setXUnits("PPM"),this.setHZtoPPM(!0))});c(b,"setShiftReference",function(a,b,c){this.fileShiftRef=a;this.fileShiftRefDataPt=0<b?b:1;this.fileShiftRefType=c},"~N,~N,~N");c(b,"isShiftTypeSpecified",function(){return-1!=this.fileShiftRefType});c(b,"applyShiftReference",function(a,b){if(!(this.fileShiftRefDataPt>this.xyCoords.length||
0>this.fileShiftRefDataPt)){var c;switch(this.fileShiftRefType){case 0:b=this.xyCoords[this.fileShiftRefDataPt-1].getXVal()-b*a;break;case 1:b=this.fileFirstX-b*a;break;case 2:b=this.fileLastX+b}for(var e=0;e<this.xyCoords.length;e++)c=this.xyCoords[e],c.setXVal(c.getXVal()-b),this.xyCoords[e]=c}},"~N,~N");b.gyroData=O(-1,[1,42.5774806,2,6.53590131,3,45.4148,3,32.436,6,6.2661,7,16.5483,9,5.9842,10,4.5752,11,13.663,13,10.70839657,14,3.07770646,15,4.3172657,17,5.7742,19,40.07757016,21,3.3631,23,11.26952167,
25,2.6083,27,11.1031,29,8.4655,31,17.2514409,33,3.2717,35,4.1765,37,3.4765,37,5.819,39,3.46,39,1.9893,40,2.4737,41,1.0919,43,2.8688,45,10.3591,47,2.4041,49,2.4048,50,4.2505,51,11.2133,53,2.4115,55,10.5763,57,1.3816,59,10.077,61,3.8114,63,11.2982,65,12.103,67,2.6694,69,10.2478,71,13.0208,73,1.4897,75,7.315,77,8.1571,79,10.7042,81,11.5384,83,1.6442,85,4.1254,87,13.9811,87,1.8525,89,2.0949,91,3.9748,93,10.4523,95,2.7874,97,2.8463,99,9.6294,99,1.9553,101,2.1916,103,1.3477,105,1.957,107,1.7331,109,1.9924,
111,9.0692,113,9.4871,113,9.3655,115,9.3856,115,14.0077,117,15.261,119,15.966,121,10.2551,123,5.5532,123,11.2349,125,13.5454,127,8.5778,129,11.8604,131,3.5159,133,5.6234,135,4.2582,137,4.7634,138,5.6615,139,6.0612,137,4.88,139,5.39,141,2.37,141,13.0359,143,2.319,145,1.429,143,11.59,147,5.62,147,1.7748,149,14631,151,10.5856,153,4.6745,155,1.312,157,1.72,159,10.23,161,1.4654,163,2.0508,165,9.0883,167,1.2281,169,3.531,171,7.5261,173,2.073,175,4.8626,176,3.451,177,1.7282,179,1.0856,180,4.087,181,5.1627,
183,1.7957,185,9.7176,187,9.817,187,0.9856,189,3.3536,191,0.7658,191,0.8319,195,9.2922,197,0.7406,199,7.7123,201,2.8469,203,24.7316,205,24.9749,207,9.034,209,6.963,209,11.7,211,9.16,223,5.95,223,1.3746,225,11.187,227,5.6,229,1.4,231,10.2,235,0.83,237,9.57,239,3.09,243,4.6,1E100]);b.gyroMap=new java.util.Hashtable;for(var b=0,a=JSV.source.JDXDataObject.gyroData.length-1;b<a;b+=2)JSV.source.JDXDataObject.gyroMap.put(""+w(JSV.source.JDXDataObject.gyroData[b]),Double.$valueOf(JSV.source.JDXDataObject.gyroData[b+
1]))});r("JSV.source");v(["java.util.Iterator"],"JSV.source.JDXDecompressor",["JSV.common.Coordinate","JU.Logger"],function(){var b=p(function(){this.ich=this.nPoints=this.yFactor=this.xFactor=0;this.t=null;this.lastX=this.firstX=0;this.maxY=4.9E-324;this.minY=1.7976931348623157E308;this.debugging=!1;this.line=this.xyCoords=null;this.lineLen=0;this.errorLog=null;this.lastDif=-2147483648;this.lastY=this.nptsFound=this.dupCount=0;this.isDIF=!0;q(this,arguments)},JSV.source,"JDXDecompressor",null,java.util.Iterator);
n(b,function(a,b,c,e,f,g){this.t=a;this.firstX=b;this.lastX=c;this.xFactor=e;this.yFactor=f;this.nPoints=g;this.debugging=JU.Logger.isActiveLevel(6)},"JSV.source.JDXSourceStreamTokenizer,~N,~N,~N,~N,~N");n(b,function(a,b){this.line=a.trim();this.lineLen=a.length;this.lastY=b},"~S,~N");c(b,"getMinY",function(){return this.minY});c(b,"getMaxY",function(){return this.maxY});c(b,"decompressData",function(a){this.errorLog=a;a=JSV.common.Coordinate.deltaX(this.lastX,this.firstX,this.nPoints);this.debugging&&
this.logError("firstX="+this.firstX+" lastX="+this.lastX+" xFactor="+this.xFactor+" yFactor="+this.yFactor+" deltaX="+a+" nPoints="+this.nPoints);this.xyCoords=Array(this.nPoints);var b=0,c=0,e=this.lastX,f=this.lastX=this.firstX,g=null,j=0,l=0,m=!1,n=this.t.labelLineNo;try{for(;null!=(this.line=this.t.readLineTrimmed())&&0>this.line.indexOf("##");)if(n++,0!=(this.lineLen=this.line.length)){this.ich=0;var p=this.isDIF,q=this.readSignedFloat()*this.xFactor,l=this.nextValue(l);!p&&0<j&&(f+=a);this.debugging&&
this.logError("Line: "+n+" isCP="+p+"\t>>"+this.line+"<<\n x, xcheck "+f+" "+f/this.xFactor+" "+q/this.xFactor+" "+a/this.xFactor);var r=l*this.yFactor,s=(new JSV.common.Coordinate).set(f,r);if(0==j||!p)this.addPoint(s,j++);else if(j<this.nPoints){var u=this.xyCoords[j-1].getYVal();r!=u&&(this.xyCoords[j-1]=s,this.logError(g+"\n"+this.line+"\nY-value Checkpoint Error! Line "+n+" for y="+r+" yLast="+u));(q==b||q<b!=0>a)&&this.logError(g+"\n"+this.line+"\nX-sequence Checkpoint Error! Line "+n+" order for xCheck="+
q+" after prevXCheck="+b);var v=Math.abs(q-b),w=Math.abs((j-c)*a),z=Math.abs(v-w)/v;this.debugging&&System.err.println("JDXD fracDif = "+q+"\t"+b+"\txcheckDif="+v+"\txiptDif="+w+"\tf="+z);0.5<z&&this.logError(g+"\n"+this.line+"\nX-value Checkpoint Error! Line "+n+" expected "+w+" but X-Sequence Check difference reads "+v)}for(var c=1==j?0:j,b=q,A=0;this.hasNext();){var B=this.ich;this.debugging&&this.logError("line "+n+" char "+B+":"+this.line.substring(0,B)+">>>>"+this.line.substring(this.ich));
Double.isNaN(l=this.nextValue(l))?this.logError("There was an error reading line "+n+" char "+B+":"+this.line.substring(0,B)+">>>>"+this.line.substring(B)):(f+=a,1.7976931348623157E308==l&&(l=0,this.logError("Point marked invalid '?' for line "+n+" char "+B+":"+this.line.substring(0,B)+">>>>"+this.line.substring(B))),this.addPoint((new JSV.common.Coordinate).set(f,l*this.yFactor),j++),this.debugging&&this.logError("nx="+ ++A+" "+f+" "+f/this.xFactor+" yval="+l))}this.lastX=f;!m&&j>this.nPoints&&(this.logError("! points overflow nPoints!"),
m=!0);g=this.line}}catch(C){if(y(C,"java.io.IOException"))C.printStackTrace();else throw C;}this.checkZeroFill(j,e);return this.xyCoords},"JU.SB");c(b,"checkZeroFill",function(a,b){this.nptsFound=a;if(this.nPoints==this.nptsFound)1E-5<Math.abs(b-this.lastX)&&this.logError("Something went wrong! The last X value was "+this.lastX+" but expected "+b);else{this.logError("Decompressor did not find "+this.nPoints+" points -- instead "+this.nptsFound+" xyCoords.length set to "+this.nPoints);for(var c=this.nptsFound;c<
this.nPoints;c++)this.addPoint((new JSV.common.Coordinate).set(0,NaN),c)}},"~N,~N");c(b,"addPoint",function(a,b){if(!(b>=this.nPoints)){this.xyCoords[b]=a;var c=a.getYVal();c>this.maxY?this.maxY=c:c<this.minY&&(this.minY=c);this.debugging&&this.logError("Coord: "+b+a)}},"JSV.common.Coordinate,~N");c(b,"logError",function(a){this.debugging&&JU.Logger.debug(a);System.err.println(a);this.errorLog.append(a).appendC("\n")},"~S");c(b,"nextValue",function(a){if(0<this.dupCount)return this.getDuplicate(a);
var b=this.skipUnknown();switch(JSV.source.JDXDecompressor.actions[b.charCodeAt(0)]){case 1:return this.isDIF=!0,a+(this.lastDif=this.readNextInteger("%"==b?0:"R">=b?b.charCodeAt(0)-73:105-b.charCodeAt(0)));case 2:return this.dupCount=this.readNextInteger("s"==b?9:b.charCodeAt(0)-82)-1,this.getDuplicate(a);case 3:a=this.readNextSqueezedNumber(b);break;case 4:this.ich--;a=this.readSignedFloat();break;case -1:a=1.7976931348623157E308;break;default:a=NaN}this.isDIF=!1;return a},"~N");c(b,"skipUnknown",
function(){for(var a="\x00";this.ich<this.lineLen&&0==JSV.source.JDXDecompressor.actions[(a=this.line.charAt(this.ich++)).charCodeAt(0)];);return a});c(b,"readSignedFloat",function(){for(var a=this.ich,b="\x00";this.ich<this.lineLen&&0<=" ,\t\n".indexOf(b=this.line.charAt(this.ich));)this.ich++;var c=1;switch(b.charCodeAt(0)){case 45:c=-1;case 43:a=++this.ich}if("E"==this.scanToNonnumeric()&&this.ich+3<this.lineLen)switch(this.line.charAt(this.ich+1).charCodeAt(0)){case 45:case 43:this.ich+=4,this.ich<
this.lineLen&&("0"<=(b=this.line.charAt(this.ich))&&"9">=b)&&this.ich++}return c*Double.parseDouble(this.line.substring(a,this.ich))});c(b,"getDuplicate",function(a){this.dupCount--;return this.isDIF?a+this.lastDif:a},"~N");c(b,"readNextInteger",function(a){for(var b=String.fromCharCode(0);this.ich<this.lineLen&&"0"<=(b=this.line.charAt(this.ich))&&"9">=b;)a=10*a+(0>a?48-b.charCodeAt(0):b.charCodeAt(0)-48),this.ich++;return a},"~N");c(b,"readNextSqueezedNumber",function(a){var b=this.ich;this.scanToNonnumeric();
return Double.parseDouble((96<a.charCodeAt(0)?96-a.charCodeAt(0):a.charCodeAt(0)-64)+this.line.substring(b,this.ich))},"~S");c(b,"scanToNonnumeric",function(){for(var a=String.fromCharCode(0);this.ich<this.lineLen&&("."==(a=this.line.charAt(this.ich))||"0"<=a&&"9">=a);)this.ich++;return this.ich<this.lineLen?a:"\x00"});c(b,"getNPointsFound",function(){return this.nptsFound});e(b,"hasNext",function(){return this.ich<this.lineLen||0<this.dupCount});e(b,"next",function(){return this.hasNext()?Double.$valueOf(this.lastY=
this.nextValue(this.lastY)):null});e(b,"remove",function(){});b.actions=F(255,0);for(b=37;115>=b;b++)switch(String.fromCharCode(b).charCodeAt(0)){case 37:case 74:case 75:case 76:case 77:case 78:case 79:case 80:case 81:case 82:case 106:case 107:case 108:case 109:case 110:case 111:case 112:case 113:case 114:JSV.source.JDXDecompressor.actions[b]=1;break;case 43:case 45:case 46:case 48:case 49:case 50:case 51:case 52:case 53:case 54:case 55:case 56:case 57:JSV.source.JDXDecompressor.actions[b]=4;break;
case 63:JSV.source.JDXDecompressor.actions[b]=-1;break;case 64:case 65:case 66:case 67:case 68:case 69:case 70:case 71:case 72:case 73:case 97:case 98:case 99:case 100:case 101:case 102:case 103:case 104:case 105:JSV.source.JDXDecompressor.actions[b]=3;break;case 83:case 84:case 85:case 86:case 87:case 88:case 89:case 90:case 115:JSV.source.JDXDecompressor.actions[b]=2}});r("JSV.source");v(["JU.Lst"],"JSV.source.JDXHeader",["java.util.Hashtable","JSV.source.JDXSourceStreamTokenizer"],function(){var b=
p(function(){this.title="";this.jcampdx="5.01";this.origin=this.dataClass=this.dataType="";this.owner="PUBLIC DOMAIN";this.time=this.date=this.longDate="";this.headerTable=this.qualifiedType=null;q(this,arguments)},JSV.source,"JDXHeader",null);K(b,function(){this.headerTable=new JU.Lst});c(b,"setTitle",function(a){this.title=a},"~S");c(b,"setJcampdx",function(a){this.jcampdx=a},"~S");c(b,"setDataType",function(a){this.dataType=a},"~S");c(b,"setDataClass",function(a){this.dataClass=a},"~S");c(b,"setOrigin",
function(a){this.origin=a},"~S");c(b,"setOwner",function(a){this.owner=a},"~S");c(b,"setLongDate",function(a){this.longDate=a},"~S");c(b,"setDate",function(a){this.date=a},"~S");c(b,"setTime",function(a){this.time=a},"~S");c(b,"getTitle",function(){return this.title});b.getTypeName=c(b,"getTypeName",function(a){a=a.toUpperCase();for(var b=0;b<JSV.source.JDXHeader.typeNames.length;b++)if(JSV.source.JDXHeader.typeNames[b].startsWith(a))return JSV.source.JDXHeader.typeNames[b].substring(18);return a},
"~S");c(b,"getQualifiedDataType",function(){return null==this.qualifiedType?this.qualifiedType=JSV.source.JDXHeader.getTypeName(this.dataType):this.qualifiedType});c(b,"getJcampdx",function(){return this.jcampdx});c(b,"getDataType",function(){return this.dataType});c(b,"getOrigin",function(){return this.origin});c(b,"getOwner",function(){return this.owner});c(b,"getLongDate",function(){return this.longDate});c(b,"getDate",function(){return this.date});c(b,"getTime",function(){return this.time});c(b,
"getDataClass",function(){return this.dataClass});c(b,"setHeaderTable",function(a){this.headerTable=a},"JU.Lst");c(b,"getHeaderTable",function(){return this.headerTable});c(b,"getHeaderRowDataAsArray",function(a,b){var c=Array((a?6:5)+this.headerTable.size()+b),e=0;c[e++]=B(-1,["##TITLE",this.title]);c[e++]=B(-1,["##JCAMP-DX",this.jcampdx]);c[e++]=B(-1,["##DATA TYPE",this.dataType]);a&&(c[e++]=B(-1,["##DATA CLASS",this.dataClass]));c[e++]=B(-1,["##ORIGIN",this.origin]);c[e++]=B(-1,["##OWNER",this.owner]);
for(var g=0;g<this.headerTable.size();g++)c[e++]=this.getRow(g);return c},"~B,~N");c(b,"getRow",function(a){a=this.headerTable.get(a);return[a[0],JU.PT.rep(a[1],"<","&lt;")]},"~N");var a=p(function(){this.map=this.table=null;q(this,arguments)},JSV.source.JDXHeader,"DataLDRTable",null);n(a,function(){this.table=new JU.Lst;this.map=new java.util.Hashtable});c(a,"addHeader",function(a,b){var c=this.map.get(a);null==c?(c=Integer.$valueOf(this.table.size()),this.table.addLast(B(-1,[a,b,JSV.source.JDXSourceStreamTokenizer.cleanLabel(a)])),
this.map.put(a,c)):this.table.get(c.intValue())[1]=b},"~S,~S");b.typeNames=B(-1,"ND NMR SPECTRUM   NMR;NMR SPECTRUM      NMR;INFRARED SPECTRUM IR;MASS SPECTRUM     MS;RAMAN SPECTRUM    RAMAN;GAS CHROMATOGRAM  GC;UV/VIS SPECTRUM   UV/VIS".split(";"))});r("JSV.source");v(["J.api.JmolJDXMOLReader"],"JSV.source.JDXReader","java.io.BufferedReader $.FileInputStream $.StringReader java.util.Hashtable $.LinkedHashMap $.StringTokenizer javajs.api.Interface JU.AU $.Lst $.PT $.Rdr $.SB JSV.common.Coordinate $.JSVFileManager $.JSViewer $.PeakInfo $.Spectrum JSV.exception.JSVException JSV.source.JDXDecompressor $.JDXHeader $.JDXSource $.JDXSourceStreamTokenizer JU.Logger".split(" "),
function(){var b=p(function(){this.mnovaParamValue=null;this.nmrMaxY=NaN;this.errorLog=this.t=this.source=null;this.isZipFile=this.done=this.obscure=!1;this.filePath=null;this.loadImaginary=!0;this.ignorePeakTables=this.ignoreShiftReference=this.isSimulation=!1;this.lastErrPath=null;this.isTabularData=!1;this.blockID=this.nSpec=this.lastSpec=this.firstSpec=0;this.peakData=this.acdMolFile=this.acdAssignments=this.modelSpectrum=this.reader=this.mpr=null;q(this,arguments)},JSV.source,"JDXReader",null,
J.api.JmolJDXMOLReader);n(b,function(a,b,c,e,f,g){a=JU.PT.trimQuotes(a);if(this.isSimulation=null!=a&&a.startsWith("http://SIMULATION/"))this.nmrMaxY=Double.isNaN(g)?1E4:g;this.filePath=a;this.obscure=b;this.firstSpec=e;this.lastSpec=f;this.loadImaginary=c},"~S,~B,~B,~N,~N,~N");b.getVarList=c(b,"getVarList",function(a){a=JSV.source.JDXReader.VAR_LIST_TABLE[0].indexOf(a);return JSV.source.JDXReader.VAR_LIST_TABLE[1].substring(a+1,a+12).trim()},"~S");b.createJDXSourceFromStream=c(b,"createJDXSourceFromStream",
function(a,b,c,e){return JSV.source.JDXReader.createJDXSource(null,a,"stream",b,c,-1,-1,e)},"java.io.InputStream,~B,~B,~N");b.getHeaderMap=c(b,"getHeaderMap",function(a,b){return JSV.source.JDXReader.getHeaderMapS(a,b,-1,null)},"java.io.InputStream,java.util.Map");b.getHeaderMapS=c(b,"getHeaderMapS",function(a,b,c,e){a=JSV.source.JDXReader.createJDXSource(null,a,null,!1,!1,0,-1,0).getJDXSpectrum(c).headerTable;null==b&&(b=new java.util.LinkedHashMap);c=0;for(var f=a.size();c<f;c++){var g=a.get(c);
b.put(null==e?g[2]:g[2]+e,g[1])}return b},"java.io.InputStream,java.util.Map,~N,~S");b.createJDXSource=c(b,"createJDXSource",function(a,b,c,e,f,g,j,l){var m=j<g,n=null,p=null;if(JU.AU.isAB(b)&&(p=b,JU.Rdr.isZipB(p)))return JSV.source.JDXReader.readBrukerFileZip(p,null==a?c:a.getFullPath());"string"==typeof b||null!=p?("string"==typeof b&&(n=b),b=JSV.common.JSVFileManager.getBufferedReaderForStringOrBytes(b)):b=C(b,"java.io.InputStream")?JSV.common.JSVFileManager.getBufferedReaderForInputStream(b):
b;var q=p=null;try{if(null==b){if(null!=a&&a.isDirectory())return JSV.source.JDXReader.readBrukerFileDir(a.getFullPath());b=JSV.common.JSVFileManager.getBufferedReaderFromName(c)}if(!m){b.mark(400);var r=R(400,"\x00");b.read(r,0,400);b.reset();p=String.instantialize(r);if(p.startsWith("PK"))return b.close(),JSV.source.JDXReader.readBrukerFileZip(null,a.getFullPath());if(0<=p.indexOf("\x00")||0==p.indexOf("##TITLE= Parameter file")||0==p.indexOf("##TITLE= Audit trail"))return b.close(),JSV.source.JDXReader.readBrukerFileDir(a.getParentAsFile().getFullPath());
var s=p.indexOf("#"),u=p.indexOf("<");if(0>s||0<=u&&u<s){var v=p.toLowerCase(),v=v.contains("<animl")||v.contains("<!doctype technique")?"AnIML":v.contains("xml-cml")?"CML":v.contains("<nmrml")?"NMRML":null;if(null==v)return JSV.source.JDXReader.readBrukerFileDir(a.getFullPath());q=JSV.common.JSViewer.getInterface("JSV.source."+v+"Reader").getSource(c,b);b.close();if(null==q)throw JU.Logger.error(p+"..."),new JSV.exception.JSVException("File type not recognized");}}null==q&&(q=(new JSV.source.JDXReader(c,
e,f,g,j,l)).getJDXSource(b,m));null!=n&&q.setInlineData(n);return q}catch(w){if(y(w,Exception))throw JSV.common.JSViewer.isJS||w.printStackTrace(),null!=b&&b.close(),null!=p&&JU.Logger.error(p+"..."),a=w.getMessage(),new JSV.exception.JSVException("Error reading data: "+a);throw w;}},"J.api.GenericFileInterface,~O,~S,~B,~B,~N,~N,~N");b.readBrukerFileDir=c(b,"readBrukerFileDir",function(a){return javajs.api.Interface.getInterface("JSV.source.BrukerReader").readBrukerDir(a)},"~S");b.readBrukerFileZip=
c(b,"readBrukerFileZip",function(a,b){return javajs.api.Interface.getInterface("JSV.source.BrukerReader").readBrukerZip(a,b)},"~A,~S");c(b,"getJDXSource",function(a,b){this.source=new JSV.source.JDXSource(0,this.filePath);this.isZipFile=C(a,"JSV.api.JSVZipReader");this.t=new JSV.source.JDXSourceStreamTokenizer(a);this.errorLog=new JU.SB;for(var c=null,e=null,f=!1;!this.done&&"##TITLE".equals(this.t.peakLabel());){f=!0;null!=c&&!this.isZipFile&&this.logError("Warning - file is a concatenation without LINK record -- does not conform to JCAMP-DX standard 6.1.3!");
var g=new JSV.common.Spectrum,j=new JSV.source.JDXHeader.DataLDRTable;for(b&&g.setHeaderTable(j.table);!this.done&&null!=(c=this.t.getLabel())&&null!=(e=this.getValue(c));)if(this.isTabularData){if(b){j.addHeader(this.t.rawLabel,"<data>");break}this.processTabularData(g,j,c,b);this.addSpectrum(g,!1);this.isSimulation&&g.getXUnits().equals("PPM")&&g.setHZtoPPM(!0);g=null}else{if(!b){if(c.equals("##DATATYPE")&&e.toUpperCase().equals("LINK")){this.getBlockSpectra(j);g=null;continue}if(c.equals("##NTUPLES")||
c.equals("##VARNAME")){this.getNTupleSpectra(j,g,c);g=null;continue}}c.equals("##JCAMPDX")&&this.setVenderSpecificValues(this.t.rawLine);null==g&&(g=new JSV.common.Spectrum);this.processLabel(g,j,c,e,b)}b&&null!=g&&this.addSpectrum(g,!1)}if(!f)throw new JSV.exception.JSVException("##TITLE record not found");this.source.setErrorLog(this.errorLog.toString());return this.source},"~O,~B");c(b,"processLabel",function(a,b,c,e,f){if(this.readDataLabel(a,c,e,this.errorLog,this.obscure,f)||f){if(null!=this.mnovaParamValue){var g;
if(e.startsWith("(")&&0<=(g=e.indexOf(","))){var j=e.substring(1,g).trim();g=e.indexOf(")",g+1);0<g&&(e=e.substring(g+1).trim());b.addHeader(j,e)}this.mnovaParamValue=null}else b.addHeader(this.t.rawLabel,e);f||this.checkCustomTags(a,c,e)}},"JSV.common.Spectrum,JSV.source.JDXHeader.DataLDRTable,~S,~S,~B");c(b,"logError",function(a){this.errorLog.append(null==this.filePath||this.filePath.equals(this.lastErrPath)?"":this.filePath).append("\n").append(a).append("\n");this.lastErrPath=this.filePath},
"~S");c(b,"setVenderSpecificValues",function(a){0<=a.indexOf("JEOL")&&(System.out.println("Skipping ##.SHIFTREFERENCE for JEOL "+a),this.ignoreShiftReference=!0);0<=a.indexOf("MestReNova")&&(this.ignorePeakTables=!0)},"~S");c(b,"getValue",function(a){var b=this.isTabularDataLabel(a)?"":this.t.getValue();return"##END".equals(a)?null:b},"~S");c(b,"isTabularDataLabel",function(a){return this.isTabularData=0<="##DATATABLE##PEAKTABLE##XYDATA##XYPOINTS#".indexOf(a+"#")},"~S");c(b,"addSpectrum",function(a,
b){if(!this.loadImaginary&&a.isImaginary())return JU.Logger.info("FileReader skipping imaginary spectrum -- use LOADIMAGINARY TRUE to load this spectrum."),!0;if(null!=this.acdAssignments){if(!a.dataType.equals("MASS SPECTRUM")&&!a.isContinuous())return JU.Logger.info("Skipping ACD Labs line spectrum for "+a),!0;if(0<this.acdAssignments.size())try{this.mpr.setACDAssignments(a.title,a.getTypeLabel(),this.source.peakCount,this.acdAssignments,this.acdMolFile)}catch(c){if(y(c,Exception))JU.Logger.info("Failed to create peak data: "+
c);else throw c;}null!=this.acdMolFile&&JSV.common.JSVFileManager.cachePut("mol",this.acdMolFile)}Float.isNaN(this.nmrMaxY)?1E4<=a.getMaxY()&&a.normalizeSimulation(1E3):a.normalizeSimulation(this.nmrMaxY);this.isSimulation&&a.setSimulated(this.filePath);this.nSpec++;if(0<this.firstSpec&&this.nSpec<this.firstSpec)return!0;if(0<this.lastSpec&&this.nSpec>this.lastSpec)return!(this.done=!0);a.setBlockID(this.blockID);this.source.addJDXSpectrum(null,a,b);return!0},"JSV.common.Spectrum,~B");c(b,"getBlockSpectra",
function(a){JU.Logger.debug("--JDX block start--");for(var b="",c=null,e=0==this.source.type,f=!1;null!=(b=this.t.getLabel())&&!b.equals("##TITLE");)c=this.getValue(b),e&&!this.readHeaderLabel(this.source,b,c,this.errorLog,this.obscure)&&a.addHeader(this.t.rawLabel,c),b.equals("##BLOCKS")&&100<JU.PT.parseInt(c)&&0>=this.firstSpec&&(f=!0);c=this.getValue(b);if(!"##TITLE".equals(b))throw new JSV.exception.JSVException("Unable to read block source");e&&this.source.setHeaderTable(a.table);this.source.type=
1;this.source.isCompoundSource=!0;a=new JSV.common.Spectrum;e=new JSV.source.JDXHeader.DataLDRTable;this.readDataLabel(a,b,c,this.errorLog,this.obscure,!1);try{for(var g;null!=(g=this.t.getLabel());){if(null==(c=this.getValue(g))&&"##END".equals(b)){JU.Logger.debug("##END= "+this.t.getValue());break}b=g;if(this.isTabularData)this.processTabularData(a,e,b,!1);else{if(b.equals("##DATATYPE"))if(c.toUpperCase().equals("LINK"))this.getBlockSpectra(e),b=a=null;else{if(c.toUpperCase().startsWith("NMR PEAK")&&
this.ignorePeakTables)return this.done=!0,this.source}else if(b.equals("##NTUPLES")||b.equals("##VARNAME"))this.getNTupleSpectra(e,a,b),a=null,b="";if(this.done)break;if(null==a){a=new JSV.common.Spectrum;e=new JSV.source.JDXHeader.DataLDRTable;if(""===b)continue;if(null==b){b="##END";continue}}if(null==c){if(0<a.getXYCoords().length&&!this.addSpectrum(a,f))return this.source;a=new JSV.common.Spectrum;e=new JSV.source.JDXHeader.DataLDRTable}else this.processLabel(a,e,b,c,!1)}}}catch(j){if(y(j,Exception))throw JSV.common.JSViewer.isJS||
j.printStackTrace(),new JSV.exception.JSVException(j.getMessage());throw j;}this.addErrorLogSeparator();this.source.setErrorLog(this.errorLog.toString());JU.Logger.debug("--JDX block end--");return this.source},"JSV.source.JDXHeader.DataLDRTable");c(b,"addErrorLogSeparator",function(){0<this.errorLog.length()&&this.errorLog.lastIndexOf("=====================\n")!=this.errorLog.length()-22&&this.logError("=====================\n")});c(b,"getNTupleSpectra",function(a,b,c){var e=O(-1,[1.7976931348623157E308,
4.9E-324]);this.blockID=Math.random();0<this.firstSpec&&b.setNumDim(1);var f=c.equals("##VARNAME");f||(c="");var g=new java.util.Hashtable,j=Array(2);0==this.source.type&&(this.source.type=2,this.source.isCompoundSource=!0,this.source.setHeaderTable(a.table));for(;!(c=f?c:this.t.getLabel()).equals("##PAGE");){for(var f=!1,l=new java.util.StringTokenizer(this.t.getValue(),","),m=new JU.Lst;l.hasMoreTokens();)m.addLast(l.nextToken().trim());g.put(c,m)}f=g.get("##SYMBOL");if(!c.equals("##PAGE"))throw new JSV.exception.JSVException("Error Reading NTuple Source");
for(var l=this.t.getValue(),m=null,n=!0;!this.done;){if((c=this.t.getLabel()).equals("##ENDNTUPLES")){this.t.getValue();break}if(c.equals("##PAGE"))l=this.t.getValue();else{if(null==m&&(m=new JSV.common.Spectrum,b.copyTo(m),m.setTitle(b.getTitle()),!m.is1D())){var p=l.indexOf("=");if(0<=p)try{m.setY2D(this.parseAFFN(l.substring(0,p),l.substring(p+1).trim()));var q=l.substring(0,p).trim(),r=f.indexOf(q);0<=r&&m.setY2DUnits(g.get("##UNITS").get(r))}catch(s){if(!y(s,Exception))throw s;}}p=new JSV.source.JDXHeader.DataLDRTable;
for(m.setHeaderTable(p.table);!c.equals("##DATATABLE");)p.addHeader(this.t.rawLabel,this.t.getValue()),c=this.t.getLabel();c=!0;r=this.t.flushLine();0<r.trim().indexOf("PEAKS")&&(c=!1);var v=r.indexOf("("),u=r.lastIndexOf(")");if(-1==v||-1==u)throw new JSV.exception.JSVException("Variable List not Found");v=r.substring(v,u+1);for(r=u=0;r<f.size();r++){var w=f.get(r).trim();-1!=v.indexOf(w)&&(j[u++]=w);if(2==u)break}this.setTabularDataType(m,"##"+(c?"XYDATA":"PEAKTABLE"));if(!this.readNTUPLECoords(m,
g,j,e))throw new JSV.exception.JSVException("Unable to read Ntuple Source");m.nucleusX.equals("?")||(b.nucleusX=m.nucleusX);b.nucleusY=m.nucleusY;b.freq2dX=m.freq2dX;b.freq2dY=m.freq2dY;b.y2DUnits=m.y2DUnits;r=0;for(c=a.table.size();r<c;r++)v=a.table.get(r),u=JSV.source.JDXSourceStreamTokenizer.cleanLabel(v[0]),!u.equals("##TITLE")&&(!u.equals("##DATACLASS")&&!u.equals("##NTUPLES"))&&p.table.addLast(v);this.addSpectrum(m,!n);n=!1;m=null}}this.addErrorLogSeparator();this.source.setErrorLog(this.errorLog.toString());
JU.Logger.info("NTUPLE MIN/MAX Y = "+e[0]+" "+e[1]);return this.source},"JSV.source.JDXHeader.DataLDRTable,JSV.source.JDXDataObject,~S");c(b,"readDataLabel",function(a,b,c,e,f,g){if(!this.readHeaderLabel(a,b,c,e,f))return!1;b+=" ";if(0<="##MINX ##MINY ##MAXX ##MAXY ##FIRSTY ##DELTAX ##DATACLASS ".indexOf(b))return!1;switch("##FIRSTX  ##LASTX   ##NPOINTS ##XFACTOR ##YFACTOR ##XUNITS  ##YUNITS  ##XLABEL  ##YLABEL  ##NUMDIM  ##OFFSET  ".indexOf(b)){case 0:return a.fileFirstX=this.parseAFFN(b,c),!1;case 10:return a.fileLastX=
this.parseAFFN(b,c),!1;case 20:return a.fileNPoints=Integer.parseInt(c),!1;case 30:return a.setXFactor(this.parseAFFN(b,c)),!1;case 40:return a.yFactor=this.parseAFFN(b,c),!1;case 50:return a.setXUnits(c),!1;case 60:return a.setYUnits(c),!1;case 70:return a.setXLabel(c),!0;case 80:return a.setYLabel(c),!0;case 90:return a.setNumDim(Integer.parseInt(c)),!1;case 100:return a.isShiftTypeSpecified()||a.setShiftReference(this.parseAFFN(b,c),1,1),!1;default:if(17>b.length||g&&0<=c.indexOf(","))return!g;
if(b.equals("##.OBSERVEFREQUENCY "))return a.setObservedFreq(this.parseAFFN(b,c)),!1;if(b.equals("##.OBSERVENUCLEUS "))return a.setObservedNucleus(c),!1;if(b.equals("##$REFERENCEPOINT ")&&!a.isShiftTypeSpecified()){var j=c.indexOf(" ");0<j&&(c=c.substring(0,j));a.setShiftReference(this.parseAFFN(b,c),1,2);return!1}if(b.equals("##.SHIFTREFERENCE ")){if(this.ignoreShiftReference||!a.dataType.toUpperCase().contains("SPECTRUM"))return!1;c=JU.PT.replaceAllCharacters(c,")(","");c=new java.util.StringTokenizer(c,
",");if(4!=c.countTokens())return!1;try{c.nextToken();c.nextToken();var j=I(Float.parseFloat(c.nextToken().trim())),l=this.parseAFFN(b,c.nextToken().trim());a.setShiftReference(l,j,0)}catch(m){if(!y(m,Exception))throw m;}return!1}return!0}},"JSV.source.JDXDataObject,~S,~S,JU.SB,~B,~B");c(b,"readHeaderLabel",function(a,b,c,e,f){switch(b){case "##TITLE":return a.setTitle(f||null==c||c.equals("")?"Unknown":c),!1;case "##JCAMPDX":return a.jcampdx=c,a=JU.PT.parseFloat(c),(6<=a||Float.isNaN(a))&&null!=
e&&e.append("Warning: JCAMP-DX version may not be fully supported: "+c+"\n"),!1;case "##ORIGIN":return a.origin=null!=c&&!c.equals("")?c:"Unknown",!1;case "##OWNER":return a.owner=null!=c&&!c.equals("")?c:"Unknown",!1;case "##DATATYPE":return a.dataType=c,!1;case "##LONGDATE":return a.longDate=c,!1;case "##DATE":return a.date=c,!1;case "##TIME":return a.time=c,!1;case "##$PARAMETERFILE":return this.mnovaParamValue=c,!1}return!0},"JSV.source.JDXHeader,~S,~S,JU.SB,~B");c(b,"setTabularDataType",function(a,
b){b.equals("##PEAKASSIGNMENTS")?a.setDataClass("PEAKASSIGNMENTS"):b.equals("##PEAKTABLE")?a.setDataClass("PEAKTABLE"):b.equals("##XYDATA")?a.setDataClass("XYDATA"):b.equals("##XYPOINTS")&&a.setDataClass("XYPOINTS")},"JSV.source.JDXDataObject,~S");c(b,"processTabularData",function(a,b,c,e){this.setTabularDataType(a,c);a.setHeaderTable(b.table);if(a.dataClass.equals("XYDATA"))a.checkJDXRequiredTokens(),e||this.decompressData(a,null);else if(a.dataClass.equals("PEAKTABLE")||a.dataClass.equals("XYPOINTS")){a.setContinuous(a.dataClass.equals("XYPOINTS"));
try{this.t.readLineTrimmed()}catch(f){if(!y(f,"java.io.IOException"))throw f;}1.7976931348623157E308!=a.xFactor&&1.7976931348623157E308!=a.yFactor?(b=this.t.getValue(),b=JSV.common.Coordinate.parseDSV(b,a.xFactor,a.yFactor)):b=JSV.common.Coordinate.parseDSV(this.t.getValue(),1,1);a.setXYCoords(b);b=JSV.common.Coordinate.deltaX(b[b.length-1].getXVal(),b[0].getXVal(),b.length);a.setIncreasing(0<b)}else throw new JSV.exception.JSVException("Unable to read JDX file tabular data for line "+this.t.labelLineNo);
},"JSV.source.JDXDataObject,JSV.source.JDXHeader.DataLDRTable,~S,~B");c(b,"readNTUPLECoords",function(a,b,c,e){var f;if(a.dataClass.equals("XYDATA")){f=b.get("##SYMBOL");var g=f.indexOf(c[0]),j=f.indexOf(c[1]);f=b.get("##VARNAME");a.setVarName(f.get(j).toUpperCase());f=b.get(c="##FACTOR");a.setXFactor(this.parseAFFN(c,f.get(g)));a.setYFactor(this.parseAFFN(c,f.get(j)));f=b.get(c="##LAST");a.fileLastX=this.parseAFFN(c,f.get(g));f=b.get(c="##FIRST");a.fileFirstX=this.parseAFFN(c,f.get(g));f=b.get("##VARDIM");
a.fileNPoints=Integer.parseInt(f.get(g));f=b.get("##UNITS");a.setXUnits(f.get(g));a.setYUnits(f.get(j));null==a.nucleusX&&null!=(f=b.get("##.NUCLEUS"))?(a.setNucleusAndFreq(f.get(0),!1),a.setNucleusAndFreq(f.get(g),!0)):null==a.nucleusX&&(a.nucleusX="?");this.decompressData(a,e);return!0}return a.dataClass.equals("PEAKTABLE")||a.dataClass.equals("XYPOINTS")?(a.setContinuous(a.dataClass.equals("XYPOINTS")),f=b.get("##SYMBOL"),g=f.indexOf(c[0]),j=f.indexOf(c[1]),f=b.get("##UNITS"),a.setXUnits(f.get(g)),
a.setYUnits(f.get(j)),a.setXYCoords(JSV.common.Coordinate.parseDSV(this.t.getValue(),a.xFactor,a.yFactor)),!0):!1},"JSV.source.JDXDataObject,java.util.Map,~A,~A");c(b,"parseAFFN",function(a,b){var c=b.indexOf("E");if(0<c){var e;switch(b.length-c){case 2:case 3:this.logError("Warning - "+a+" value "+b+" is not of the format xxxE[+/-]nn or xxxE[+/-]nnn (spec. 4.5.3) -- warning only; accepted");break;case 4:case 5:if("+"==(e=b.charAt(c+1))||"-"==e)break;default:this.logError("Error - "+a+" value "+b+
" is not of the format xxxE[+/-]nn or xxxE[+/-]nnn (spec. 4.5.3) -- "+b.substring(c)+" ignored!"),b=b.substring(0,c)}}return Double.parseDouble(b)},"~S,~S");c(b,"decompressData",function(a,b){var c=this.errorLog.length();a.setIncreasing(a.fileLastX>a.fileFirstX);a.setContinuous(!0);var e=new JSV.source.JDXDecompressor(this.t,a.fileFirstX,a.fileLastX,a.xFactor,a.yFactor,a.fileNPoints),f=System.currentTimeMillis(),g=e.decompressData(this.errorLog);JU.Logger.debugging&&JU.Logger.debug("decompression time = "+
(System.currentTimeMillis()-f)+" ms");a.setXYCoords(g);f=e.getMinY();null!=b&&(f<b[0]&&(b[0]=f),f=e.getMaxY(),f>b[1]&&(b[1]=f));a.finalizeCoordinates();this.errorLog.length()!=c&&(c=JSV.common.Coordinate.deltaX(a.fileLastX,a.fileFirstX,a.fileNPoints),this.logError(a.getTitle()),this.logError("firstX from Header "+a.fileFirstX),this.logError("lastX from Header "+a.fileLastX+" Found "+e.lastX),this.logError("deltaX from Header "+c),this.logError("Number of points in Header "+a.fileNPoints+" Found "+
e.getNPointsFound()));JU.Logger.debugging&&System.err.println(this.errorLog.toString())},"JSV.source.JDXDataObject,~A");c(b,"checkCustomTags",function(a,b,c){10<b.length&&(b=b.substring(0,10));null==a?System.out.println(b):this.modelSpectrum=a;b="##$MODELS ##$PEAKS  ##$SIGNALS##$MOLFILE##PEAKASSI##$UVIRASS##$MSFRAGM".indexOf(b);if(0>b)return!1;this.getMpr().set(this,this.filePath,null);try{switch(this.reader=new java.io.BufferedReader(new java.io.StringReader(c)),b){case 0:this.mpr.readModels();break;
case 10:case 20:this.peakData=new JU.Lst;this.source.peakCount+=this.mpr.readPeaks(20==b,this.source.peakCount);break;case 30:this.acdAssignments=new JU.Lst;this.acdMolFile=JU.PT.rep(c,"$$ Empty String","");break;case 40:case 50:case 60:return this.acdAssignments=new JU.Lst,this.mpr.readACDAssignments(a.fileNPoints,40==b,this.acdAssignments)}}catch(e){if(y(e,Exception))throw new JSV.exception.JSVException(e.getMessage());throw e;}finally{this.reader=null}return!0},"JSV.common.Spectrum,~S,~S");c(b,
"getMpr",function(){return null==this.mpr?this.mpr=JSV.common.JSViewer.getInterface("J.jsv.JDXMOLParser"):this.mpr});e(b,"rd",function(){return this.reader.readLine()});e(b,"setSpectrumPeaks",function(a,b,c){this.modelSpectrum.setPeakList(this.peakData,b,c);this.modelSpectrum.isNMR()&&this.modelSpectrum.setHydrogenCount(a)},"~N,~S,~S");e(b,"addPeakData",function(a){null==this.peakData&&(this.peakData=new JU.Lst);this.peakData.addLast(new JSV.common.PeakInfo(a))},"~S");e(b,"processModelData",function(){},
"~S,~S,~S,~S,~S,~N,~N,~B");e(b,"discardLinesUntilContains",function(a){for(var b;null!=(b=this.rd())&&0>b.indexOf(a););return b},"~S");e(b,"discardLinesUntilContains2",function(a,b){for(var c;null!=(c=this.rd())&&0>c.indexOf(a)&&0>c.indexOf(b););return c},"~S,~S");e(b,"discardLinesUntilNonBlank",function(){for(var a;null!=(a=this.rd())&&0==a.trim().length;);return a});b.main=c(b,"main",function(){try{for(var a=JSV.source.JDXReader.getHeaderMap(new java.io.FileInputStream("c:/temp/t6.jdx"),null),b,
c=a.keySet().iterator();c.hasNext()&&((b=c.next())||1);)if(!b.startsWith("##")){var e=a.get(b);30<e.length&&(e=e.substring(0,30)+"...");System.out.println(b+"="+e)}}catch(f){if(y(f,Exception))f.printStackTrace();else throw f;}System.out.println("done")},"~A");b.VAR_LIST_TABLE=B(-1,["PEAKTABLE   XYDATA      XYPOINTS"," (XY..XY)    (X++(Y..Y)) (XY..XY)    "])});r("JSV.source");v(["JSV.source.JDXHeader"],"JSV.source.JDXSource",["JU.Lst"],function(){var b=p(function(){this.type=0;this.isCompoundSource=
!1;this.jdxSpectra=null;this.errors="";this.filePath=null;this.peakCount=0;this.isView=!1;this.inlineData=null;q(this,arguments)},JSV.source,"JDXSource",JSV.source.JDXHeader);n(b,function(a,b){A(this,JSV.source.JDXSource,[]);this.type=a;this.setFilePath(b);this.headerTable=new JU.Lst;this.jdxSpectra=new JU.Lst;this.isCompoundSource=0!=a},"~N,~S");c(b,"dispose",function(){this.jdxSpectra=this.headerTable=null});c(b,"getJDXSpectrum",function(a){0>a&&(a+=this.jdxSpectra.size());return this.jdxSpectra.size()<=
a?null:this.jdxSpectra.get(a)},"~N");c(b,"addJDXSpectrum",function(a,b,c){null==a&&(a=this.filePath);b.setFilePath(a);null!=this.inlineData&&b.setInlineData(this.inlineData);a=this.jdxSpectra.size();(0==a||!this.jdxSpectra.get(a-1).addSubSpectrum(b,c))&&this.jdxSpectra.addLast(b)},"~S,JSV.common.Spectrum,~B");c(b,"getNumberOfSpectra",function(){return this.jdxSpectra.size()});c(b,"getSpectra",function(){return this.jdxSpectra});c(b,"getSpectraAsArray",function(){return null==this.jdxSpectra?null:
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