ggspavis
This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see ggspavis.
Visualization functions for spatially resolved transcriptomics data
Bioconductor version: 3.14
Visualization functions for spatially resolved transcriptomics datasets stored in SpatialExperiment format. Includes functions to create several types of plots for data from from spot-based (e.g. 10x Genomics Visium) and molecule-based (e.g. seqFISH) technological platforms.
Author: Lukas M. Weber [aut, cre] 
, Helena L. Crowell [aut]
Maintainer: Lukas M. Weber <lukas.weber.edu at gmail.com>
citation("ggspavis")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggspavis")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ggspavis")| ggspavis overview | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | SingleCell, Software, Transcriptomics |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (2.5 years) |
| License | MIT + file LICENSE |
| Depends | ggplot2 |
| Imports | SpatialExperiment, SingleCellExperiment, SummarizedExperiment, ggside, grid, methods, stats |
| System Requirements | |
| URL | https://github.com/lmweber/ggspavis |
| Bug Reports | https://github.com/lmweber/ggspavis/issues |
See More
| Suggests | BiocStyle, rmarkdown, knitr, STexampleData, BumpyMatrix, scater, scran, uwot, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ggspavis_1.0.0.tar.gz |
| Windows Binary | ggspavis_1.0.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | ggspavis_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ggspavis |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ggspavis |
| Bioc Package Browser | https://code.bioconductor.org/browse/ggspavis/ |
| Package Short Url | https://bioconductor.org/packages/ggspavis/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.14 | Source Archive |