Introduction to Single-Cell Analysis with Bioconductor

Authors: Robert Amezquita [aut], Aaron Lun [aut], Stephanie Hicks [aut], Raphael Gottardo [aut], Ludwig Geistlinger [cre]
Version: 1.14.0
Modified: 2022-11-15
Compiled: 2024-10-30
Environment: R version 4.4.1 (2024-06-14), Bioconductor 3.20
License: CC BY 4.0
Copyright: Bioconductor, 2024
Source: https://github.com/OSCA-source/OSCA.intro

Welcome

This site contains the introductory chapters for the “Orchestrating Single-Cell Analysis with Bioconductor” book. This describes how to install R and Bioconductor packages, links out to some resources to learn R, describes how to load datasets into an R session, provides an overview of the SingleCellExperiment class, and performs a “quick start” demonstration for basic single-cell RNA-seq analyses. It is intended for readers with little-to-no computational background who are just getting started with analyses in R.