Back to the "Multiple platform build/check report"
| Package 3/172 | OS | Arch | BUILD | CHECK | BUILD BIN |
affxparser1.4.1James Bullard | Linux (SUSE 9.2) | x86_64 | OK | OK | |
| Linux (SUSE 9.2) | i686 | OK | OK | ||
| Solaris 2.9 | sparc | OK | [ OK ] | ||
| Linux (SUSE 10.0) | x86_64 | OK | OK | ||
| Windows Server 2003 | x86_64 | OK | OK | OK |
| Package: affxparser |
| Version: 1.4.1 |
| Command: /loc/biocbuild/1.8d/R/bin/R CMD check affxparser_1.4.1.tar.gz |
| RetCode: 0 |
| Time: 263.9 seconds |
| Status: OK |
| CheckDir: affxparser.Rcheck |
| Warnings: 0 |
* checking for working latex ... OK * using log directory '/loc/biocbuild/1.8d/Rpacks/affxparser.Rcheck' * using Version 2.3.1 (2006-06-01) * checking for file 'affxparser/DESCRIPTION' ... OK * this is package 'affxparser' version '1.4.1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'affxparser' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable compilation flags in Makevars ... OK * creating affxparser-Ex.R ... OK * checking examples ... OK * creating affxparser-manual.tex ... OK * checking affxparser-manual.tex ... OK
affxparser.Rcheck/00install.out:
* Installing *source* package 'affxparser' ...
** libs
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/file/BARFileData.cpp -o fusion_sdk/file/BARFileData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/file/BPMAPFileData.cpp -o fusion_sdk/file/BPMAPFileData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/file/CDFFileData.cpp -o fusion_sdk/file/CDFFileData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/file/CELFileData.cpp -o fusion_sdk/file/CELFileData.o
fusion_sdk/file/CELFileData.h:102: warning: 'packed' attribute ignored for field of type 'unsigned char'
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/file/CHPFileData.cpp -o fusion_sdk/file/CHPFileData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/file/EXPFileData.cpp -o fusion_sdk/file/EXPFileData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/file/FileIO.cpp -o fusion_sdk/file/FileIO.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/file/GRCFileData.cpp -o fusion_sdk/file/GRCFileData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/file/MSKFileData.cpp -o fusion_sdk/file/MSKFileData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/file/PSIFileData.cpp -o fusion_sdk/file/PSIFileData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/gcast/src/GridControlData.cpp -o fusion_sdk/gcast/src/GridControlData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/array/src/ArrayAttributes.cpp -o fusion_sdk/calvin_files/array/src/ArrayAttributes.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/array/src/ArrayAudit.cpp -o fusion_sdk/calvin_files/array/src/ArrayAudit.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/array/src/ArrayData.cpp -o fusion_sdk/calvin_files/array/src/ArrayData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/CDFData.cpp -o fusion_sdk/calvin_files/data/src/CDFData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/CELData.cpp -o fusion_sdk/calvin_files/data/src/CELData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/CHPBackgroundZone.cpp -o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/CHPData.cpp -o fusion_sdk/calvin_files/data/src/CHPData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/CHPExpressionEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/CHPUniversalEntry.cpp -o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/DATData.cpp -o fusion_sdk/calvin_files/data/src/DATData.o
fusion_sdk/calvin_files/data/src/DATData.cpp:494:2: warning: no newline at end of file
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/DataGroup.cpp -o fusion_sdk/calvin_files/data/src/DataGroup.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp -o fusion_sdk/calvin_files/data/src/DataGroupHeader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/DataSet.cpp -o fusion_sdk/calvin_files/data/src/DataSet.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/DataSetHeader.cpp -o fusion_sdk/calvin_files/data/src/DataSetHeader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/FileHeader.cpp -o fusion_sdk/calvin_files/data/src/FileHeader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/GenericData.cpp -o fusion_sdk/calvin_files/data/src/GenericData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp -o fusion_sdk/calvin_files/data/src/GenericDataHeader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp -o fusion_sdk/calvin_files/exception/src/ExceptionBase.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp: In member function 'char affymetrix_fusion_io::FusionCDFProbeInformation::GetPBase() const':
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:420: warning: converting to non-pointer type 'char' from NULL
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp: In member function 'char affymetrix_fusion_io::FusionCDFProbeInformation::GetTBase() const':
fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:433: warning: converting to non-pointer type 'char' from NULL
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCELData.o
fusion_sdk/file/CELFileData.h:102: warning: 'packed' attribute ignored for field of type 'unsigned char'
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/fusion/src/FusionCHPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/fusion/src/FusionGrcFileReader.cpp -o fusion_sdk/calvin_files/fusion/src/FusionGrcFileReader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.cpp -o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o
fusion_sdk/file/CELFileData.h:102: warning: 'packed' attribute ignored for field of type 'unsigned char'
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o
fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.cpp:396:2: warning: no newline at end of file
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp -o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/AuditFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/AuditFileReader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/CHPFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CelFileReader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/DATFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/DATFileReader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp: In member function 'void affymetrix_calvin_io::DataSetHeaderReader::ReadParameters(std::ifstream&, affymetrix_calvin_io::DataSetHeader&)':
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:160: warning: deleting 'const void*' is undefined
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetReader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/FileInput.cpp -o fusion_sdk/calvin_files/parsers/src/FileInput.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp: In member function 'void affymetrix_calvin_io::GenericDataHeaderReader::Read(affymetrix_calvin_io::GenericDataHeader&)':
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:63: warning: deleting 'const void*' is undefined
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/GridControlFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GridControlFileReader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/parsers/src/TextFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/TextFileReader.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp -o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/utils/src/DateTime.cpp -o fusion_sdk/calvin_files/utils/src/DateTime.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/utils/src/FileUtils.cpp -o fusion_sdk/calvin_files/utils/src/FileUtils.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/utils/src/StringUtils.cpp -o fusion_sdk/calvin_files/utils/src/StringUtils.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c fusion_sdk/calvin_files/utils/src/checksum.cpp -o fusion_sdk/calvin_files/utils/src/checksum.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c R_affx_cel_parser.cpp -o R_affx_cel_parser.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c R_affx_cdf_parser.cpp -o R_affx_cdf_parser.o
g++ -I/loc/biocbuild/1.8d/R/include -I/loc/biocbuild/1.8d/R/include -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/file -Ifusion_sdk/portability -Ifusion_sdk/gcast/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -D_USE_MEM_MAPPING_ -I/usr/local/include -fPIC -g -O2 -O1 -c R_affx_cdf_extras.cpp -o R_affx_cdf_extras.o
g++ -G -L/usr/local/lib -o affxparser.so fusion_sdk/file/BARFileData.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/CHPFileData.o fusion_sdk/file/EXPFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/GRCFileData.o fusion_sdk/file/MSKFileData.o fusion_sdk/file/PSIFileData.o fusion_sdk/gcast/src/GridControlData.o fusion_sdk/calvin_files/array/src/ArrayAttributes.o fusion_sdk/calvin_files/array/src/ArrayAudit.o fusion_sdk/calvin_files/array/src/ArrayData.o fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/CHPBackgroundZone.o fusion_sdk/calvin_files/data/src/CHPData.o fusion_sdk/calvin_files/data/src/CHPExpressionEntry.o fusion_sdk/calvin_files/data/src/CHPGenotypeEntry.o fusion_sdk/calvin_files/data/src/CHPUniversalEntry.o fusion_sdk/calvin_files/data/src/DATData.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/FusionCHPData.o fusion_sdk/calvin_files/fusion/src/FusionGrcFileReader.o fusion_sdk/calvin_files/fusion/src/FusionProbeSetResults.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCHPDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCHPDataAdapter.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/AuditFileReader.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CHPFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/DATFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/parsers/src/GridControlFileReader.o fusion_sdk/calvin_files/parsers/src/TextFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o
** R
** inst
** save image
** preparing package for lazy loading
** help
>>> Building/Updating help pages for package 'affxparser'
Formats: text html latex example
affxparser-package text html latex
affxparserInfo text html latex example
applyCdfGroups text html latex example
cdfAddBaseMmCounts text html latex
cdfAddProbeOffsets text html latex
cdfGetFields text html latex
cdfGtypeCelToPQ text html latex
cdfMergeStrands text html latex
cdfMergeToQuartets text html latex
cellindexmaps text html latex
cellxy text html latex
findCdf text html latex example
findFiles text html latex
invertMap text html latex example
read.affybatch2 text html latex example
readCdf text html latex
readCdfCellIndices text html latex
readCdfGroupNames text html latex
readCdfHeader text html latex example
readCdfIsPm text html latex
readCdfNbrOfCellsPerUnitGroup text html latex example
readCdfUnitNames text html latex example
readCdfUnits text html latex example
readCdfUnitsWriteMap text html latex example
readCel text html latex example
readCelHeader text html latex example
readCelIntensities text html latex example
readCelRectangle text html latex example
readCelUnits text html latex example
** building package indices ...
* DONE (affxparser)