* checking for file 'gcrma/DESCRIPTION' ... OK
* preparing 'gcrma':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
* Installing *source* package 'gcrma' ...
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c baseProfile.c -o baseProfile.o
baseProfile.c: In function `gcrma_getSeq2':
baseProfile.c:14: warning: unused variable `nx'
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c computeAffinities.c -o computeAffinities.o
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include -I/usr/local/include -fPIC -g -O2 -std=gnu99 -Wall -c postmean.c -o postmean.o
gcc -G -L/usr/local/lib -o gcrma.so baseProfile.o computeAffinities.o postmean.o
** R
** data
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()' or start with 'help(Biobase)'. For details
on reading vignettes, see the openVignette help page.
Loading required package: affyio
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library '/loc/biocbuild/1.9d/R/library/affy/libs/affy.so':
ld.so.1: /loc/biocbuild/1.9d/R/bin/exec/R: fatal: relocation error: file /loc/biocbuild/1.9d/R/library/affy/libs/affy.so: symbol nearbyint: referenced symbol not found
Error: package 'affy' could not be loaded
Execution halted
ERROR: lazy loading failed for package 'gcrma'
** Removing '/tmp/Rinst1706040233/gcrma'
ERROR
Installation failed.
Removing '/tmp/Rinst1706040233'