Package: LMGene

Version: 1.6.0

Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD check LMGene_1.6.0.tar.gz

RetCode: 0

Time: 1023.2 seconds

Status: WARNINGS

CheckDir: LMGene.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/loc/biocbuild/bbs-2.0-bioc/meat/LMGene.Rcheck'
* using R version 2.5.0 (2007-04-23)
* checking for file 'LMGene/DESCRIPTION' ... OK
* this is package 'LMGene' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'LMGene' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  GetLMObj lnormeS msecalcmult tranestmult transeS
Undocumented data sets:
  sample.eS sample.ind sample.mat
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating LMGene-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating LMGene-manual.tex ... OK
* checking LMGene-manual.tex ... OK

WARNING: There was 1 warning, see
  /loc/biocbuild/bbs-2.0-bioc/meat/LMGene.Rcheck/00check.log
for details

* Installing *source* package 'LMGene' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'LMGene'
     Formats: text html latex example 
  LMGene                            text    html    latex   example
  genediff                          text    html    latex   example
  glog                              text    html    latex   example
  jggrad2                           text    html    latex   example
  jglog                             text    html    latex   example
  lnorm                             text    html    latex   example
  mlm2lm                            text    html    latex   example
  msa                               text    html    latex   example
  msecalc                           text    html    latex   example
  neweS                             text    html    latex   example
  norm                              text    html    latex   example
  pvadjust                          text    html    latex   example
  rowaov                            text    html    latex   example
  rowlist                           text    html    latex   example
  tranest                           text    html    latex   example
  tranest2                          text    html    latex   example
  vlist                             text    html    latex   example
** building package indices ...
* DONE (LMGene)