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Package 175/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
RMAGEML2.10.0Steffen DurinckLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | [ OK ] | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | ERROR | skipped | ||
lemming | Windows Server 2003 (32-bit) | x64 | ERROR | skipped | skipped | |
liverpool | Windows Server 2003 R2 (32-bit) | x64 | ERROR | skipped | skipped | |
derby | Mac OS X (10.4.9) | i686 | ERROR | skipped |
Package: RMAGEML |
Version: 2.10.0 |
Command: /home/biocbuild/bbs-2.0-bioc/R/bin/R CMD build RMAGEML |
RetCode: 0 |
Time: 14.7 seconds |
Status: OK |
PackageFile: RMAGEML_2.10.0.tar.gz |
* checking for file 'RMAGEML/DESCRIPTION' ... OK * preparing 'RMAGEML': * checking DESCRIPTION meta-information ... OK * cleaning src * checking whether 'INDEX' is up-to-date ... NO * use '--force' to overwrite the existing 'INDEX' * installing the package to re-build vignettes * Installing *source* package 'RMAGEML' ... configure: creating ./config.status config.status: creating src/Makevars ** libs gcc -std=gnu99 -I/home/biocbuild/bbs-2.0-bioc/R/include -I/home/biocbuild/bbs-2.0-bioc/R/include -I/usr/lib64/jvm/java/include -I/usr/lib64/jvm/java/include/linux -I/usr/local/include -fpic -g -O2 -Wall -c rmageml.c -o rmageml.o rmageml.c: In function 'arji_createJVM': rmageml.c:61: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'destroyOM': rmageml.c:88: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'newRMAGESTK': rmageml.c:105: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'importFeatures': rmageml.c:130: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getGridDimensions': rmageml.c:165: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'selectQTypesDeriv': rmageml.c:207: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getSizeDED': rmageml.c:241: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'selectQTypes': rmageml.c:291: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getExternalData': rmageml.c:345: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getQuantitationTypes': rmageml.c:390: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getQTypeDescription': rmageml.c:428: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'createNewQTDim': rmageml.c:460: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'addQuantitationTypeInfo': rmageml.c:486: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'createNewMBASet': rmageml.c:521: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'setMBA': rmageml.c:545: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'updateMAGEML': rmageml.c:578: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c:595: warning: cast from pointer to integer of different size rmageml.c: In function 'writeMAGEML': rmageml.c:625: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getVoidArrayInt': rmageml.c:655: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getVoidArrayStr': rmageml.c:690: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getVoidStr': rmageml.c:724: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'getVoidVoid': rmageml.c:747: warning: dereferencing type-punned pointer will break strict-aliasing rules rmageml.c: In function 'destroyOM': rmageml.c:91: warning: control reaches end of non-void function rmageml.c: At top level: rmageml.c:17: warning: 'JavaMethod_type_tag' defined but not used gcc -std=gnu99 -shared -L/usr/local/lib64 -o RMAGEML.so rmageml.o -L/usr/lib64/jvm/java/jre/lib/amd64 -L/usr/lib64/jvm/java/jre/lib/i386 -ljava -L/usr/lib64/jvm/java/jre/lib/amd64/server -L/usr/lib64/jvm/java/jre/lib/i386/client -ljvm -L/home/biocbuild/bbs-2.0-bioc/R/lib -lR ** R ** inst ** preparing package for lazy loading Loading required package: marray Loading required package: limma Loading required package: tkWidgets Loading required package: widgetTools Loading required package: tcltk Loading Tcl/Tk interface ... done Loading required package: DynDoc Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. ** help >>> Building/Updating help pages for package 'RMAGEML' Formats: text html latex example JavaVMRef-class text html latex MEXP14 text html latex addDerivedData text html latex example addNormToMAGEML text html latex example getArrayID text html latex example getArrayLayout text html latex example getArrayLayoutLimma text html latex example getGnames text html latex example getNumberOfFeatures text html latex example getOrganization text html latex example getQTDimensions text html latex example getQTypeDescription text html latex example getQuantitationTypes text html latex example getSubmitterAddress text html latex example importMAGEML text html latex example importMAGEOM text html latex example makeEset text html latex example makeMarrayRaw text html latex example makeRG text html latex example reset text html latex example writeMAGEML text html latex example ** building package indices ... * DONE (RMAGEML) * creating vignettes ... OK * cleaning src * removing junk files * checking for LF line-endings in source files * checking for empty or unneeded directories * building 'RMAGEML_2.10.0.tar.gz'