Package: Ruuid

Version: 1.14.0

Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD check Ruuid_1.14.0.tar.gz

RetCode: 0

Time: 81.7 seconds

Status: WARNINGS

CheckDir: Ruuid.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.0-bioc/meat/Ruuid.Rcheck'
* using R version 2.5.0 (2007-04-23)
* checking for file 'Ruuid/DESCRIPTION' ... OK
* this is package 'Ruuid' version '1.14.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Ruuid' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  Biobase
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Ruuid-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Ruuid-manual.tex ... OK
* checking Ruuid-manual.tex ... OK

WARNING: There was 1 warning, see
  /extra/loc/biocbuild/bbs-2.0-bioc/meat/Ruuid.Rcheck/00check.log
for details

* Installing *source* package 'Ruuid' ...
checking for pkg-config... /usr/bin/pkg-config
checking for glib-config... /opt/gnome/bin/glib-config
checking for glib-2.0... yes
checking PKG_CFLAGS... -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib/glib-2.0/include  
checking PKG_LIBS... -L/opt/gnome/lib -lglib-2.0  
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking /usr/include/unistd.h usability... yes
checking /usr/include/unistd.h presence... yes
checking for /usr/include/unistd.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c clear.c -o clear.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c compare.c -o compare.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c copy.c -o copy.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c gen_uuid.c -o gen_uuid.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c isnull.c -o isnull.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c pack.c -o pack.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c parse.c -o parse.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c Rinit.c -o Rinit.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c Ruuid.c -o Ruuid.o
Ruuid.c: In function `Ruuid_getuuid':
Ruuid.c:88: warning: unused variable `z'
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c unpack.c -o unpack.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c unparse.c -o unparse.o
gcc -std=gnu99 -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include   -I/opt/gnome/include/glib-2.0 -I/opt/gnome/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fpic  -g -O2 -Wall -c uuid_time.c -o uuid_time.o
gcc -std=gnu99 -shared -L/usr/local/lib -o Ruuid.so clear.o compare.o copy.o gen_uuid.o isnull.o pack.o parse.o Rinit.o Ruuid.o unpack.o unparse.o uuid_time.o -L/opt/gnome/lib -lglib-2.0    -L/loc/biocbuild/bbs-2.0-bioc/R/lib -lR
** R
** inst
** preparing package for lazy loading
** help
 >>> Building/Updating help pages for package 'Ruuid'
     Formats: text html latex example 
  Ruuid-class                       text    html    latex   example
  getuuid                           text    html    latex   example
  uuidt-class                       text    html    latex   example
** building package indices ...
* DONE (Ruuid)