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Package 111/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
lumi1.2.0Pan DuLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | [ OK ] | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | OK | |
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
derby | Mac OS X (10.4.9) | i686 | OK | OK |
Package: lumi |
Version: 1.2.0 |
Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD check lumi_1.2.0.tar.gz |
RetCode: 0 |
Time: 388.2 seconds |
Status: OK |
CheckDir: lumi.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory '/loc/biocbuild/bbs-2.0-bioc/meat/lumi.Rcheck' * using R version 2.5.0 (2007-04-23) * checking for file 'lumi/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'lumi' version '1.2.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'lumi' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating lumi-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating lumi-manual.tex ... OK * checking lumi-manual.tex ... OK
lumi.Rcheck/00install.out:
* Installing *source* package 'lumi' ... ** R ** data ** inst ** preparing package for lazy loading Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: affy Loading required package: affyio Loading required package: mgcv This is mgcv 1.3-23 Loading required package: annotate Creating a new generic function for "summary" in "lumi" Creating a new generic function for "pairs" in "lumi" Creating a new generic function for "plot" in "lumi" ** help >>> Building/Updating help pages for package 'lumi' Formats: text html latex example LumiBatch-class text html latex example MAplot-methods text html latex example addNuId2lumi text html latex example boxplot-methods text html latex example detectOutlier text html latex example detectionCall text html latex example estimateLumiCV text html latex example example.lumi text html latex example hist-methods text html latex example id2seq text html latex example inverseVST text html latex example is.nuID text html latex example lumi.package text html latex example lumiB text html latex example lumiExpresso text html latex example lumiN text html latex example lumiQ text html latex example lumiR text html latex example lumiT text html latex example monoSmu text html latex example monoSpline text html latex example nuID2probeID text html latex example nuID2targetID text html latex example pairs-methods text html latex example plot-methods text html latex example plotSampleRelation text html latex example plotVST text html latex example probeID2nuID text html latex example rsn text html latex example seq2id text html latex example targetID2nuID text html latex example vst text html latex example ** building package indices ... * DONE (lumi)