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Package 161/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
rama1.8.0Raphael GottardoLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
churchill | Solaris 2.9 | sparc | OK | OK | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | [ OK ] | OK | |
liverpool | Windows Server 2003 R2 (32-bit) | x64 | OK | OK | OK | |
derby | Mac OS X (10.4.9) | i686 | OK | OK |
Package: rama |
Version: 1.8.0 |
Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check rama_1.8.0.tar.gz |
RetCode: 0 |
Time: 74.5 seconds |
Status: OK |
CheckDir: rama.Rcheck |
Warnings: 0 |
* checking for working latex ... OK * using log directory 'D:/biocbld/bbs-2.0-bioc/meat/rama.Rcheck' * using R version 2.5.0 (2007-04-23) * checking for file 'rama/DESCRIPTION' ... OK * this is package 'rama' version '1.8.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'rama' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking for CRLF line endings in C/C++/Fortran sources/headers ... OK * checking for portable use of $BLAS_LIBS ... OK * creating rama-Ex.R ... OK * checking examples ... OK * creating rama-manual.tex ... OK * checking rama-manual.tex ... OK
rama.Rcheck/00install.out:
installing R.css in D:/biocbld/bbs-2.0-bioc/meat/rama.Rcheck ---------- Making package rama ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... making estimation_slice.d from estimation_slice.c making ex_estimation_slice.d from ex_estimation_slice.c making mean.sd.d from mean.sd.c making reorder.d from reorder.c making util.d from util.c gcc -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c estimation_slice.c -o estimation_slice.o estimation_slice.c: In function `mcmc_shift': estimation_slice.c:113: warning: unused variable `lambda_eps1_new' estimation_slice.c:113: warning: unused variable `lambda_eps2_new' estimation_slice.c:114: warning: unused variable `l_epsilon' estimation_slice.c:114: warning: unused variable `l_epsilon_new' estimation_slice.c:115: warning: unused variable `dens_epsilon' estimation_slice.c:115: warning: unused variable `dens_epsilon_new' estimation_slice.c:116: warning: unused variable `SSR1' estimation_slice.c:116: warning: unused variable `SSR2' estimation_slice.c:116: warning: unused variable `SS12' estimation_slice.c:117: warning: unused variable `pi' estimation_slice.c:121: warning: unused variable `SSeps_sd' estimation_slice.c:122: warning: unused variable `SSeps_sd_new' estimation_slice.c: In function `slice_sampling_lambda_eps': estimation_slice.c:484: warning: suggest parentheses around comparison in operand of & estimation_slice.c:493: warning: suggest parentheses around comparison in operand of & gcc -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c ex_estimation_slice.c -o ex_estimation_slice.o ex_estimation_slice.c: In function `mcmc': ex_estimation_slice.c:112: warning: unused variable `pi' ex_estimation_slice.c:119: warning: unused variable `dens_t' ex_estimation_slice.c:119: warning: unused variable `dens_t_new' ex_estimation_slice.c:137: warning: unused variable `sum_res1' ex_estimation_slice.c:138: warning: unused variable `sum_res2' ex_estimation_slice.c:143: warning: unused variable `old_b' ex_estimation_slice.c:144: warning: unused variable `old_a' gcc -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c mean.sd.c -o mean.sd.o gcc -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c reorder.c -o reorder.o gcc -Id:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c util.c -o util.o util.c: In function `qr_solve': util.c:570: warning: implicit declaration of function `dqrdc2_' util.c:585: warning: implicit declaration of function `dqrcf_' util.c:549: warning: unused variable `vmax' util.c: In function `inverse': util.c:608: warning: unused variable `j' util.c: In function `product_mat_vec': util.c:655: warning: unused variable `k' util.c: In function `slice_sampling_a': util.c:752: warning: suggest parentheses around comparison in operand of | util.c:752: warning: suggest parentheses around comparison in operand of & util.c:759: warning: suggest parentheses around comparison in operand of & util.c:766: warning: suggest parentheses around comparison in operand of & util.c:736: warning: unused variable `v' util.c: In function `slice_sampling_b': util.c:826: warning: suggest parentheses around comparison in operand of | util.c:826: warning: suggest parentheses around comparison in operand of & util.c:833: warning: suggest parentheses around comparison in operand of & util.c:840: warning: suggest parentheses around comparison in operand of & util.c:809: warning: unused variable `v' util.c: In function `slice_sampling_b2': util.c:890: warning: suggest parentheses around comparison in operand of & util.c:898: warning: suggest parentheses around comparison in operand of & util.c: In function `slice_sampling_a2': util.c:945: warning: suggest parentheses around comparison in operand of & util.c:953: warning: suggest parentheses around comparison in operand of & util.c: In function `slice_sampling_rho': util.c:999: warning: suggest parentheses around comparison in operand of | util.c:999: warning: suggest parentheses around comparison in operand of & util.c:1006: warning: suggest parentheses around comparison in operand of & util.c:1013: warning: suggest parentheses around comparison in operand of & util.c:983: warning: unused variable `v' util.c: In function `slice_sampling_rho2': util.c:1058: warning: suggest parentheses around comparison in operand of & util.c:1067: warning: suggest parentheses around comparison in operand of & util.c: In function `slice_sampling_shift': util.c:1142: warning: suggest parentheses around comparison in operand of | util.c:1142: warning: suggest parentheses around comparison in operand of & util.c:1149: warning: suggest parentheses around comparison in operand of & util.c:1156: warning: suggest parentheses around comparison in operand of & util.c:1123: warning: unused variable `v' util.c: In function `slice_sampling_shift2': util.c:1223: warning: suggest parentheses around comparison in operand of & util.c:1231: warning: suggest parentheses around comparison in operand of & util.c:1205: warning: unused variable `v' util.c: In function `slice_sampling_p': util.c:1371: warning: suggest parentheses around comparison in operand of & util.c:1379: warning: suggest parentheses around comparison in operand of & windres -I d:/biocbld/bbs-2.0-bioc/R/include -i rama_res.rc -o rama_res.o gcc -shared -s -o rama.dll rama.def estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o rama_res.o -Ld:/biocbld/bbs-2.0-bioc/R/bin -lR ... DLL made installing DLL installing R files installing inst files installing data files installing man source files installing indices not zipping data installing help >>> Building/Updating help pages for package 'rama' Formats: text html latex example chm arrange.row text html latex example chm est.shift text html latex example chm fit.model text html latex example chm hiv text html latex chm is.row.na text html latex example chm ls.effect text html latex example chm mat.mean text html latex example chm ratio.plot text html latex example chm weight.plot text html latex example chm Microsoft HTML Help Compiler 4.74.8702 Compiling d:\biocbld\bbs-2.0-bioc\meat\rama.Rcheck\00_pkg_src\rama\chm\rama.chm Compile time: 0 minutes, 0 seconds 10 Topics 18 Local links 0 Internet links 1 Graphic Created d:\biocbld\bbs-2.0-bioc\meat\rama.Rcheck\00_pkg_src\rama\chm\rama.chm, 28,361 bytes Compression decreased file by 9,427 bytes. adding MD5 sums * DONE (rama)