Package: twilight

Version: 1.12.0

Command: E:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check twilight_1.12.0.tar.gz

RetCode: 0

Time: 261.0 seconds

Status: OK

CheckDir: twilight.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.0-bioc/meat/twilight.Rcheck'
* using R version 2.5.0 (2007-04-23)
* checking for file 'twilight/DESCRIPTION' ... OK
* this is package 'twilight' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'twilight' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating twilight-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating twilight-manual.tex ... OK
* checking twilight-manual.tex ... OK

installing R.css in E:/biocbld/bbs-2.0-bioc/meat/twilight.Rcheck


---------- Making package twilight ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making confidence.line.d from confidence.line.c
making correlation.d from correlation.c
making kstest.d from kstest.c
making sep.d from sep.c
making twosample.perm.d from twosample.perm.c
making twosample.single.d from twosample.single.c
gcc   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c confidence.line.c -o confidence.line.o
gcc   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c correlation.c -o correlation.o
gcc   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c kstest.c -o kstest.o
gcc   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c sep.c -o sep.o
gcc   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c twosample.perm.c -o twosample.perm.o
gcc   -Ie:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c twosample.single.c -o twosample.single.o
windres -I e:/biocbld/bbs-2.0-bioc/R/include  -i twilight_res.rc -o twilight_res.o
gcc  -shared -s  -o twilight.dll twilight.def confidence.line.o correlation.o kstest.o sep.o twosample.perm.o twosample.single.o twilight_res.o  -Le:/biocbld/bbs-2.0-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'twilight'
     Formats: text html latex example chm 
  exfdr                             text    html    latex           chm
  expval                            text    html    latex           chm
  plot.twilight                     text    html    latex   example chm
  print.twilight                    text    html    latex   example chm
  twilight                          text    html    latex   example chm
  twilight.combi                    text    html    latex   example chm
  twilight.filtering                text    html    latex   example chm
  twilight.getlambda                text    html    latex           chm
  twilight.getmatrix                text    html    latex           chm
  twilight.permute.pair             text    html    latex           chm
  twilight.permute.unpair           text    html    latex           chm
  twilight.pval                     text    html    latex   example chm
  twilight.teststat                 text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling e:\biocbld\bbs-2.0-bioc\meat\twilight.Rcheck\00_pkg_src\twilight\chm\twilight.chm


Compile time: 0 minutes, 1 second
14	Topics
46	Local links
11	Internet links
1	Graphic


Created e:\biocbld\bbs-2.0-bioc\meat\twilight.Rcheck\00_pkg_src\twilight\chm\twilight.chm, 37,197 bytes
Compression decreased file by 24,100 bytes.
  preparing package twilight for lazy loading
Loading required package: splines
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

  adding MD5 sums

* DONE (twilight)