Package: BeadExplorer

Version: 1.2.0

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check BeadExplorer_1.2.0.tar.gz

RetCode: 0

Time: 119.8 seconds

Status: OK

CheckDir: BeadExplorer.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/BeadExplorer.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'BeadExplorer/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BeadExplorer' version '1.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BeadExplorer' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating BeadExplorer-Ex.R ... OK
* checking examples ... OK
* creating BeadExplorer-manual.tex ... OK
* checking BeadExplorer-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/BeadExplorer.Rcheck


---------- Making package BeadExplorer ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'BeadExplorer'
     Formats: text html latex example chm 
  HumRef8v1                         text    html    latex   example chm
  HumWG6v1                          text    html    latex   example chm
  addManifest                       text    html    latex   example chm
  batchAnalysis                     text    html    latex   example chm
  beadAnalysis                      text    html    latex   example chm
  beadData-accessor                 text    html    latex           chm
  beadData-class                    text    html    latex   example chm
  beadQC-class                      text    html    latex   example chm
  boxplotArrays                     text    html    latex   example chm
  boxplotQC                         text    html    latex   example chm
  clusterplot                       text    html    latex   example chm
  cutoff                            text    html    latex   example chm
  detectionCalls                    text    html    latex   example chm
  dotplotArrays                     text    html    latex   example chm
  dotplotQC                         text    html    latex   example chm
  examplebeadData                   text    html    latex   example chm
  examplebeadQC                     text    html    latex   example chm
  extract                           text    html    latex   example chm
  filterData                        text    html    latex   example chm
  getAnnot                          text    html    latex   example chm
  getArrayStats                     text    html    latex   example chm
  getDet                            text    html    latex   example chm
  getExprs                          text    html    latex   example chm
  getID                             text    html    latex   example chm
  getQC                             text    html    latex   example chm
  getQC2                            text    html    latex   example chm
  htmloutput                        text    html    latex   example chm
  multiDensity                      text    html    latex   example chm
  multiecdf                         text    html    latex   example chm
  normalise                         text    html    latex   example chm
  pc                                text    html    latex   example chm
  plotSamples                       text    html    latex   example chm
  readBead                          text    html    latex   example chm
  readManifest                      text    html    latex   example chm
  readQC                            text    html    latex   example chm
  scatterPlot                       text    html    latex   example chm
  write.beadData                    text    html    latex   example chm
  writeQC                           text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\BeadExplorer.Rcheck\00_pkg_src\BeadExplorer\chm\BeadExplorer.chm


Compile time: 0 minutes, 0 seconds
39	Topics
189	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\BeadExplorer.Rcheck\00_pkg_src\BeadExplorer\chm\BeadExplorer.chm, 48,187 bytes
Compression decreased file by 84,704 bytes.
  preparing package BeadExplorer for lazy loading
Loading required package: widgetTools
Loading required package: tcltk
Loading Tcl/Tk interface ... done
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: R2HTML
Loading required package: tkWidgets
Loading required package: DynDoc
  adding MD5 sums

* DONE (BeadExplorer)