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| Package 34/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
Biostrings2.4.8H. PagesLast Changed Date: 2007-08-13 12:41:50 -0700 Last Changed Rev: 26369 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | OK | |
| wellington | Linux (SUSE 9.2) | i686 | OK | OK | ||
| lemming | Windows Server 2003 (32-bit) | x64 | OK | OK | [ OK ] |
| Package: Biostrings |
| Version: 2.4.8 |
| Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD INSTALL --build --library=Biostrings.buildbin-libdir Biostrings_2.4.8.tar.gz |
| RetCode: 0 |
| Time: 23.5 seconds |
| Status: OK |
| PackageFile: Biostrings_2.4.8.zip |
installing R.css in D:/biocbld/bbs-2.0-bioc/meat/Biostrings.buildbin-libdir
Using auto-selected zip options 'Biostrings-ZIPDATA=zip Biostrings-HELP=ziponly'
---------- Making package Biostrings ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making CharBuffer.d from CharBuffer.c
making IntBuffer.d from IntBuffer.c
making R_init_Biostrings.d from R_init_Biostrings.c
making char_frequency.d from char_frequency.c
making match_boyermoore.d from match_boyermoore.c
making match_naive.d from match_naive.c
making match_shiftor.d from match_shiftor.c
making reverseComplement.d from reverseComplement.c
making utils.d from utils.c
gcc -ID:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c CharBuffer.c -o CharBuffer.o
gcc -ID:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c IntBuffer.c -o IntBuffer.o
gcc -ID:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c R_init_Biostrings.c -o R_init_Biostrings.o
gcc -ID:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c char_frequency.c -o char_frequency.o
gcc -ID:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c match_boyermoore.c -o match_boyermoore.o
match_boyermoore.c: In function `match_boyermoore':
match_boyermoore.c:370: warning: 'i1' might be used uninitialized in this function
match_boyermoore.c:370: warning: 'i2' might be used uninitialized in this function
match_boyermoore.c:370: warning: 'j1' might be used uninitialized in this function
match_boyermoore.c:371: warning: 'c' might be used uninitialized in this function
gcc -ID:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c match_naive.c -o match_naive.o
gcc -ID:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c match_shiftor.c -o match_shiftor.o
gcc -ID:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c reverseComplement.c -o reverseComplement.o
gcc -ID:/biocbld/bbs-2.0-bioc/R/include -Wall -O3 -std=gnu99 -c utils.c -o utils.o
utils.c: In function `Biostrings_translate_charcpy_from_i1i2':
utils.c:226: warning: 'lkup_val' might be used uninitialized in this function
utils.c: In function `Biostrings_translate_charcpy_from_subset':
utils.c:265: warning: 'lkup_val' might be used uninitialized in this function
utils.c: In function `Biostrings_translate_charcpy_to_i1i2':
utils.c:305: warning: 'lkup_val' might be used uninitialized in this function
utils.c: In function `Biostrings_translate_charcpy_to_subset':
utils.c:344: warning: 'lkup_val' might be used uninitialized in this function
utils.c: In function `Biostrings_reverse_translate_charcpy_from_i1i2':
utils.c:421: warning: 'lkup_val' might be used uninitialized in this function
windres -I D:/biocbld/bbs-2.0-bioc/R/include -i Biostrings_res.rc -o Biostrings_res.o
gcc -shared -s -o Biostrings.dll Biostrings.def CharBuffer.o IntBuffer.o R_init_Biostrings.o char_frequency.o match_boyermoore.o match_naive.o match_shiftor.o reverseComplement.o utils.o Biostrings_res.o -LD:/biocbld/bbs-2.0-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
save image
Creating a new generic function for "as.integer" in "Biostrings"
Creating a new generic function for "toString" in "Biostrings"
Creating a new generic function for "nchar" in "Biostrings"
Creating a new generic function for "as.complex" in "Biostrings"
Creating a new generic function for "as.matrix" in "Biostrings"
Creating a new generic function for "as.list" in "Biostrings"
Warning messages:
1: in the method signature for function "BStringViews" no definition for class: "file" in: matchSignature(signature, fdef, where)
2: in the method signature for function "eq" no definition for class: "BioString" in: matchSignature(signature, fdef, where)
installing inst files
installing data files
installing man source files
installing indices
zipping data
installing help
>>> Building/Updating help pages for package 'Biostrings'
Formats: text html latex example chm
AAString-class text html latex example chm
AMINO_ACID_CODE text html latex example chm
BString-class text html latex example chm
BStringViews-class text html latex chm
BStringViews-constructors text html latex example chm
Biostrings-internals text html latex chm
DNAString-class text html latex example chm
GENETIC_CODE text html latex example chm
IUPAC_CODE_MAP text html latex example chm
RNAString-class text html latex example chm
alphabetFrequency text html latex example chm
blosum50 text html latex example chm
gregexpr2 text html latex example chm
mask text html latex example chm
matchPattern text html latex example chm
matchProbePair text html latex example chm
needwunsQS text html latex example chm
readFASTA text html latex example chm
reverseComplement text html latex example chm
toComplex text html latex example chm
yeastSEQCHR1 text html latex example chm
zipping help files
Microsoft HTML Help Compiler 4.74.8702
Compiling d:\biocbld\bbs-2.0-bioc\meat\R.INSTALL.5244\Biostrings\chm\Biostrings.chm
Compile time: 0 minutes, 0 seconds
22 Topics
280 Local links
1 Internet link
1 Graphic
Created d:\biocbld\bbs-2.0-bioc\meat\R.INSTALL.5244\Biostrings\chm\Biostrings.chm, 43,005 bytes
Compression decreased file by 71,755 bytes.
adding MD5 sums
packaged installation of package 'Biostrings' as Biostrings_2.4.8.zip
* DONE (Biostrings)