Package: DEDS

Version: 1.8.0

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check DEDS_1.8.0.tar.gz

RetCode: 0

Time: 194.5 seconds

Status: OK

CheckDir: DEDS.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/DEDS.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'DEDS/DESCRIPTION' ... OK
* this is package 'DEDS' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'DEDS' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating DEDS-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating DEDS-manual.tex ... OK
* checking DEDS-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/DEDS.Rcheck


---------- Making package DEDS ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making deds.d from deds.c
making distance.d from distance.c
making input.d from input.c
making manip.d from manip.c
making random.d from random.c
making sampling.d from sampling.c
making stat_fun.d from stat_fun.c
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c deds.c -o deds.o
deds.c: In function `type2stat':
deds.c:451: warning: 'test' might be used uninitialized in this function
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c distance.c -o distance.o
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c input.c -o input.o
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c manip.c -o manip.o
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c random.c -o random.o
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c sampling.c -o sampling.o
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c stat_fun.c -o stat_fun.o
stat_fun.c: In function `tmixture':
stat_fun.c:1083: warning: statement with no effect
stat_fun.c:1061: warning: 'res' might be used uninitialized in this function
windres -I d:/biocbld/bbs-2.0-bioc/R/include  -i DEDS_res.rc -o DEDS_res.o
gcc  -shared -s  -o DEDS.dll DEDS.def deds.o distance.o input.o manip.o random.o sampling.o stat_fun.o DEDS_res.o  -Ld:/biocbld/bbs-2.0-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'DEDS'
     Formats: text html latex example chm 
  ApoA1                             text    html    latex           chm
  DEDS-internal                     text    html    latex           chm
  affySpikeIn                       text    html    latex           chm
  aggregateFun                      text    html    latex   example chm
  comp.B                            text    html    latex   example chm
  comp.F                            text    html    latex   example chm
  comp.FC                           text    html    latex   example chm
  comp.SAM                          text    html    latex   example chm
  comp.adjp                         text    html    latex   example chm
  comp.ebayes                       text    html    latex   example chm
  comp.fdr                          text    html    latex   example chm
  comp.modF                         text    html    latex   example chm
  comp.modt                         text    html    latex   example chm
  comp.stat                         text    html    latex   example chm
  comp.t                            text    html    latex   example chm
  comp.unadjp                       text    html    latex   example chm
  deds.chooseTest                   text    html    latex   example chm
  deds.class                        text    html    latex           chm
  deds.genExtra                     text    html    latex   example chm
  deds.pval                         text    html    latex   example chm
  deds.stat                         text    html    latex   example chm
  deds.stat.linkC                   text    html    latex   example chm
  hist.DEDS                         text    html    latex   example chm
  pairs.DEDS                        text    html    latex   example chm
  qqnorm.DEDS                       text    html    latex   example chm
  topgenes                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\DEDS.Rcheck\00_pkg_src\DEDS\chm\DEDS.chm


Compile time: 0 minutes, 0 seconds
27	Topics
195	Local links
1	Internet link
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\DEDS.Rcheck\00_pkg_src\DEDS\chm\DEDS.chm, 56,915 bytes
Compression decreased file by 74,474 bytes.
  preparing package DEDS for lazy loading
  adding MD5 sums

* DONE (DEDS)