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GGtools

1.4.0

Vince Carey
Last Changed Date: 2007-04-26 12:02:10 -0700
Last Changed Rev: 24317
lamb1 Linux (SUSE 10.1) x86_64  OK  OK 
wellington Linux (SUSE 9.2) i686 [ OK ] OK 
lemming Windows Server 2003 (32-bit) x64  OK  ERROR  OK 
Package: GGtools
Version: 1.4.0
Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD build GGtools
RetCode: 0
Time: 175.9 seconds
Status: OK
PackageFile: GGtools_1.4.0.tar.gz

Command output

* checking for file 'GGtools/DESCRIPTION' ... OK
* preparing 'GGtools':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'GGtools' ...
** libs
g++ -I/loc/biocbuild/bbs-2.0-bioc/R/include -I/loc/biocbuild/bbs-2.0-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -Wall -c minfra.cc -o minfra.o
minfra.cc: In function `matrix operator/(matrix&, matrix&)':
minfra.cc:459: warning: unused variable `int a2c'
minfra.cc: In function `matrix delete_col(matrix, int)':
minfra.cc:545: warning: unused variable `int ncop'
minfra.cc:545: warning: unused variable `int nresel'
minfra.cc:545: warning: unused variable `int skip'
minfra.cc:546: warning: unused variable `double*resbase'
minfra.cc:546: warning: unused variable `double*Xbase'
minfra.cc: In function `int split(matrix&, matrix&, matrix*)':
minfra.cc:1210: warning: unused variable `int j'
minfra.cc: In function `matrix* split(matrix&, matrix&)':
minfra.cc:1245: warning: unused variable `int j'
g++ -shared -L/usr/local/lib -o GGtools.so minfra.o   -L/loc/biocbuild/bbs-2.0-bioc/R/lib -lR
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: hgfocus
Loading required package: geneplotter
Loading required package: annotate
Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: mgu74av2
Creating a new generic function for "nrow" in "GGtools"
** help
 >>> Building/Updating help pages for package 'GGtools'
     Formats: text html latex example 
  HM2rac                            text    html    latex   example
  HMworkflow                        text    html    latex   example
  Strains2rac                       text    html    latex   example
  geneLocs                          text    html    latex   example
  genoStrings                       text    html    latex   example
  make_racExSet                     text    html    latex   example
  oGtypeExSet-class                 text    html    latex   example
  plot_EvG                          text    html    latex   example
  racExSet-class                    text    html    latex   example
  snpMeta-class                     text    html    latex   example
  snpScreen                         text    html    latex   example
  snps                              text    html    latex   example
** building package indices ...
Loading required package: methods
* DONE (GGtools)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'GGtools_1.4.0.tar.gz'