Package: HEM

Version: 1.8.0

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check HEM_1.8.0.tar.gz

RetCode: 0

Time: 55.9 seconds

Status: OK

CheckDir: HEM.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/HEM.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'HEM/DESCRIPTION' ... OK
* this is package 'HEM' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HEM' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating HEM-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating HEM-manual.tex ... OK
* checking HEM-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/HEM.Rcheck


---------- Making package HEM ------------
  adding build stamp to DESCRIPTION
  making DLL ...
making hem.d from hem.c
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c hem.c -o hem.o
windres -I d:/biocbld/bbs-2.0-bioc/R/include  -i HEM_res.rc -o HEM_res.o
gcc  -shared -s  -o HEM.dll HEM.def hem.o HEM_res.o  -Ld:/biocbld/bbs-2.0-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'HEM'
     Formats: text html latex example chm 
  am.tran                           text    html    latex           chm
  am.tran.half                      text    html    latex           chm
  base.ASE.Olig                     text    html    latex           chm
  base.PSE.Olig                     text    html    latex           chm
  base.error.Olig                   text    html    latex           chm
  base.error.Olig.quanOnly          text    html    latex           chm
  boot.base.ASE.Olig                text    html    latex           chm
  boot.base.PSE.Olig                text    html    latex           chm
  boot.base.error.Olig              text    html    latex           chm
  fixbound.predict.smooth.spline    text    html    latex           chm
  hem                               text    html    latex   example chm
  hem.eb.prior                      text    html    latex   example chm
  hem.fdr                           text    html    latex   example chm
  hem.null.no                       text    html    latex           chm
  hem.null.one                      text    html    latex           chm
  hem.null.two                      text    html    latex           chm
  hem.preproc                       text    html    latex   example chm
  mubcp                             text    html    latex           chm
  nonpar.error.Olig                 text    html    latex           chm
  nonpar.no.error.Olig              text    html    latex           chm
  nonpar.rep.error.Olig             text    html    latex           chm
  par.error.Olig                    text    html    latex           chm
  par.no.error.Olig                 text    html    latex           chm
  par.rep.error.Olig                text    html    latex           chm
  pbrain                            text    html    latex           chm
  permut                            text    html    latex           chm
  quant.norm                        text    html    latex           chm
  quant.normal                      text    html    latex           chm
  quant.normal2                     text    html    latex           chm
  quant.normalize                   text    html    latex           chm
  remove.sig.genes                  text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\HEM.Rcheck\00_pkg_src\HEM\chm\HEM.chm


Compile time: 0 minutes, 0 seconds
32	Topics
71	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\HEM.Rcheck\00_pkg_src\HEM\chm\HEM.chm, 29,644 bytes
Compression decreased file by 29,751 bytes.
  preparing package HEM for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

  adding MD5 sums

* DONE (HEM)