Package: PGSEA

Version: 1.2.0

Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD check PGSEA_1.2.0.tar.gz

RetCode: 0

Time: 203.2 seconds

Status: OK

CheckDir: PGSEA.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.0-bioc/meat/PGSEA.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'PGSEA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PGSEA' version '1.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'PGSEA' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating PGSEA-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating PGSEA-manual.tex ... OK
* checking PGSEA-manual.tex ... OK

* Installing *source* package 'PGSEA' ...
** R
** data
** inst
** help
 >>> Building/Updating help pages for package 'PGSEA'
     Formats: text html latex example 
  GOLUBmcs                          text    html    latex   example
  PGSEA                             text    html    latex   example
  VAImcs                            text    html    latex   example
  aggregateExprs                    text    html    latex   example
  convertSmc                        text    html    latex   example
  editSmc                           text    html    latex   example
  go2smc                            text    html    latex   example
  nbEset                            text    html    latex   example
  readGmt                           text    html    latex   example
  readSmc                           text    html    latex   example
  scanSmc                           text    html    latex   example
  smcPlot                           text    html    latex   example
  writeGmt                          text    html    latex   example
  writeSmc                          text    html    latex   example
** building package indices ...
* DONE (PGSEA)