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Package 183/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
SAGElyzer1.14.0Jianhua ZhangLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
wellington | Linux (SUSE 9.2) | i686 | OK | [ WARNINGS ] | ||
lemming | Windows Server 2003 (32-bit) | x64 | OK | ERROR | OK |
Package: SAGElyzer |
Version: 1.14.0 |
Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD check SAGElyzer_1.14.0.tar.gz |
RetCode: 0 |
Time: 143.4 seconds |
Status: WARNINGS |
CheckDir: SAGElyzer.Rcheck |
Warnings: 1 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.0-bioc/meat/SAGElyzer.Rcheck' * using R version 2.5.1 (2007-06-27) * checking for file 'SAGElyzer/DESCRIPTION' ... OK * this is package 'SAGElyzer' version '1.14.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'SAGElyzer' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... WARNING 'library' or 'require' calls not declared from: RODBC Rdbi RdbiPgSQL See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating SAGElyzer-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating SAGElyzer-manual.tex ... OK * checking SAGElyzer-manual.tex ... OK WARNING: There was 1 warning, see /extra/loc/biocbuild/bbs-2.0-bioc/meat/SAGElyzer.Rcheck/00check.log for details
SAGElyzer.Rcheck/00install.out:
* Installing *source* package 'SAGElyzer' ... ** R ** data ** exec ** inst ** preparing package for lazy loading Loading required package: AnnBuilder Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: XML Loading required package: annotate Loading required package: tkWidgets Loading required package: widgetTools Loading required package: tcltk Loading Tcl/Tk interface ... done Loading required package: DynDoc Loading required package: genefilter Loading required package: survival Loading required package: splines ** help >>> Building/Updating help pages for package 'SAGElyzer' Formats: text html latex example SAGELyzer text html latex example SAGEMapper text html latex example SAGEToolTips text html latex example SAGEWidget text html latex example con4Win text html latex example getGEOSAGE text html latex example getNormFactor text html latex example getTargetRow text html latex example mergeSAGE text html latex example mergeSAGEWidget text html latex example querySAGE text html latex example support text html latex example ** building package indices ... * DONE (SAGElyzer)