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| Package 186/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
ScISI1.8.0Tony ChiangLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
| wellington | Linux (SUSE 9.2) | i686 | OK | [ WARNINGS ] | ||
| lemming | Windows Server 2003 (32-bit) | x64 | OK | WARNINGS | OK |
| Package: ScISI |
| Version: 1.8.0 |
| Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD check ScISI_1.8.0.tar.gz |
| RetCode: 0 |
| Time: 748.1 seconds |
| Status: WARNINGS |
| CheckDir: ScISI.Rcheck |
| Warnings: 1 |
* checking for working latex ... OK * using log directory '/extra/loc/biocbuild/bbs-2.0-bioc/meat/ScISI.Rcheck' * using R version 2.5.1 (2007-06-27) * checking for file 'ScISI/DESCRIPTION' ... OK * this is package 'ScISI' version '1.8.0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'ScISI' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... WARNING Loading required package: methods Loading required package: utils Error in getGeneric(f, TRUE, envir, package) : no generic function found for "summary" Execution halted A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating ScISI-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating ScISI-manual.tex ... OK * checking ScISI-manual.tex ... OK WARNING: There was 1 warning, see /extra/loc/biocbuild/bbs-2.0-bioc/meat/ScISI.Rcheck/00check.log for details
ScISI.Rcheck/00install.out:
* Installing *source* package 'ScISI' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: apComplex
Loading required package: graph
Loading required package: RBGL
Loading required package: GO
Loading required package: GOstats
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: Category
Loading required package: KEGG
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Matrix
Loading required package: lattice
Loading required package: Rgraphviz
Loading required package: geneplotter
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Attaching package: 'Rgraphviz'
The following object(s) are masked from package:annotate :
toFile
Loading required package: YEAST
Loading required package: xtable
** help
>>> Building/Updating help pages for package 'ScISI'
Formats: text html latex example
Desc-methods text html latex
ID-methods text html latex
JaccardCoef text html latex example
ScISI text html latex example
ScISI2html text html latex example
arp23 text html latex example
arp23G text html latex example
arp23Orf text html latex example
arp23Y2HG text html latex example
calcGraphStats text html latex example
cfia text html latex example
cfiaOrf text html latex example
checkComplex text html latex example
checkSGN text html latex example
compBijection text html latex example
compareComplex text html latex example
createGODataFrame text html latex example
createGOMatrix text html latex example
createMipsDataFrame text html latex example
createMipsMatrix text html latex example
createYeastDataObj text html latex example
dataS text html latex example
eAt text html latex example
eAt2 text html latex example
edgeProp text html latex example
egEBI16112 text html latex example
expStats text html latex example
findSubComp text html latex example
gavin2mergeMG text html latex example
getAPMSData text html latex example
getGOInfo text html latex example
getLocOrfs text html latex example
getMipsInfo text html latex example
getURL-methods text html latex
graphSumStats text html latex example
ho2mergeMGG text html latex example
krogan2mergeMGGH text html latex example
list2Matrix text html latex example
locScISI text html latex example
mapping2SysG text html latex example
mappingsG text html latex example
maximizeSimilarity text html latex example
meanDeg text html latex example
mergeBGMat text html latex example
mips2go text html latex example
nAt text html latex
nAtMap text html latex example
nucComp text html latex example
recCompSize text html latex example
redundantM text html latex example
rmByEvi text html latex example
runAlignment text html latex example
runCompareComplex text html latex example
subCompM text html latex example
sumStats text html latex example
unWantedComp text html latex example
xtraGO text html latex example
xtraGONodes text html latex example
yeastData-class text html latex example
** building package indices ...
* DONE (ScISI)