Package: affxparser

Version: 1.8.3

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD INSTALL --build --library=affxparser.buildbin-libdir affxparser_1.8.3.tar.gz

RetCode: 0

Time: 124.3 seconds

Status: OK

PackageFile: affxparser_1.8.3.zip

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/affxparser.buildbin-libdir

Using auto-selected zip options ' affxparser-HELP=ziponly'

---------- Making package affxparser ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making R_affx_bpmap_parser.d from R_affx_bpmap_parser.cpp
making R_affx_cdf_deprecated.d from R_affx_cdf_deprecated.cpp
making R_affx_cdf_extras.d from R_affx_cdf_extras.cpp
making R_affx_cdf_parser.d from R_affx_cdf_parser.cpp
making R_affx_cel_parser.d from R_affx_cel_parser.cpp
making R_affx_test_bpmap_cmdline.d from R_affx_test_bpmap_cmdline.cpp
making R_affx_test_cdfwriter_cmdline.d from R_affx_test_cdfwriter_cmdline.cpp
making R_affx_test_celwriter_cmdline.d from R_affx_test_celwriter_cmdline.cpp
making R_affx_test_cmd_line.d from R_affx_test_cmd_line.cpp
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/CDFData.cpp -o fusion_sdk/calvin_files/data/src/CDFData.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:26,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:26,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:26,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:26,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::DataSetHeader::DataSetHeader(const affymetrix_calvin_io::DataSetHeader&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void affymetrix_calvin_io::CDFProbeSetInformation::SetDataGroup(affymetrix_calvin_io::DataGroup&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:26,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:26,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:26,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:26,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp -o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/CELData.cpp -o fusion_sdk/calvin_files/data/src/CELData.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CELData.cpp:21:
fusion_sdk/calvin_files/data/src/CELData.h:33: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetIntensities(int32_t, int32_t, FloatVector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:427: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp:431: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetStdev(int32_t, int32_t, FloatVector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:445: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/data/src/CELData.cpp: In member function `bool affymetrix_calvin_io::CelFileData::GetNumPixels(int32_t, int32_t, Int16Vector&)':
fusion_sdk/calvin_files/data/src/CELData.cpp:459: warning: comparison between signed and unsigned integer expressions
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/DataGroup.cpp -o fusion_sdk/calvin_files/data/src/DataGroup.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroup.h:28,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/DataGroup.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const affymetrix_calvin_io::DataSetHeader*, std::vector<affymetrix_calvin_io::DataSetHeader, std::allocator<affymetrix_calvin_io::DataSetHeader> > >, _ForwardIterator = affymetrix_calvin_io::DataSetHeader*]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp -o fusion_sdk/calvin_files/data/src/DataGroupHeader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::DataSetHeader::DataSetHeader(const affymetrix_calvin_io::DataSetHeader&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator<affymetrix_calvin_parameter::ParameterNameValueType>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::ColumnInfo, _Alloc = std::allocator<affymetrix_calvin_io::ColumnInfo>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/DataSet.cpp -o fusion_sdk/calvin_files/data/src/DataSet.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:26,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:26,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:26,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSet.h:26,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:22:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/DataSet.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator<affymetrix_calvin_parameter::ParameterNameValueType>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::ColumnInfo, _Alloc = std::allocator<affymetrix_calvin_io::ColumnInfo>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = std::string, _Alloc = std::allocator<std::string>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = std::wstring, _Alloc = std::allocator<std::wstring>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/DataSetHeader.cpp -o fusion_sdk/calvin_files/data/src/DataSetHeader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:22:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/FileHeader.cpp -o fusion_sdk/calvin_files/data/src/FileHeader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator<affymetrix_calvin_parameter::ParameterNameValueType>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<const affymetrix_calvin_io::GenericDataHeader*, std::vector<affymetrix_calvin_io::GenericDataHeader, std::allocator<affymetrix_calvin_io::GenericDataHeader> > >, _ForwardIterator = affymetrix_calvin_io::GenericDataHeader*]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::GenericDataHeader, _Alloc = std::allocator<affymetrix_calvin_io::GenericDataHeader>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::DataGroupHeader::DataGroupHeader(const affymetrix_calvin_io::DataGroupHeader&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::ColumnInfo, _Alloc = std::allocator<affymetrix_calvin_io::ColumnInfo>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::DataSetHeader, _Alloc = std::allocator<affymetrix_calvin_io::DataSetHeader>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/GenericData.cpp -o fusion_sdk/calvin_files/data/src/GenericData.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/GenericData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:35: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp -o fusion_sdk/calvin_files/data/src/GenericDataHeader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp:22:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.cpp:22:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_parameter::ParameterNameValueType, _Alloc = std::allocator<affymetrix_calvin_parameter::ParameterNameValueType>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affymetrix_calvin_io::GenericDataHeader, _Alloc = std::allocator<affymetrix_calvin_io::GenericDataHeader>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affymetrix_calvin_io::GenericDataHeader::GenericDataHeader(const affymetrix_calvin_io::GenericDataHeader&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/exception/src/ExceptionBase.cpp -o fusion_sdk/calvin_files/exception/src/ExceptionBase.o
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionTagValuePairType.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:28,
                 from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:22:
fusion_sdk/calvin_files/data/src/CELData.h:33: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.cpp:23:
fusion_sdk/calvin_files/parsers/src/CelFileReader.h:35: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `virtual void affymetrix_fusion_io::CalvinCELDataAdapter::GetParameters(affymetrix_fusion_io::FusionTagValuePairTypeList&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.cpp:21:
fusion_sdk/file/BPMAPFileData.h:29: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:22:
fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.cpp:23:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.cpp:21:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp -o fusion_sdk/calvin_files/fusion/src/FusionCELData.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionTagValuePairType.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.cpp:23:
fusion_sdk/calvin_files/data/src/CELData.h:33: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp -o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionTagValuePairType.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.h:27,
                 from fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `virtual void affymetrix_fusion_io::GCOSCELDataAdapter::GetParameters(affymetrix_fusion_io::FusionTagValuePairTypeList&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp -o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o
In file included from fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.cpp:25: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType::operator=(const affymetrix_calvin_parameter::ParameterNameValueDefaultRequiredType&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/CDFFileReader.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CDFFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/CelFileReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/data/src/CELData.h:26,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/CELData.h:33: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/CelFileReader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/CelFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:35: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.h:35: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp: In member function `void affymetrix_calvin_io::DataSetHeaderReader::ReadParameters(std::ifstream&, affymetrix_calvin_io::DataSetHeader&)':
fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.cpp:161: warning: deleting `const void*' is undefined
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp -o fusion_sdk/calvin_files/parsers/src/DataSetReader.o
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:29,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataSetReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/FileHeaderReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:31: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/FileInput.cpp -o fusion_sdk/calvin_files/parsers/src/FileInput.o
fusion_sdk/calvin_files/parsers/src/FileInput.cpp:27: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:27,
                 from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.h:31: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp: In member function `void affymetrix_calvin_io::GenericDataHeaderReader::Read(affymetrix_calvin_io::GenericDataHeader&)':
fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.cpp:63: warning: deleting `const void*' is undefined
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp -o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:30,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:28,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataSetReader.h:31: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:31,
                 from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/DataGroupReader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:21:
fusion_sdk/calvin_files/parsers/src/GenericFileReader.h:36: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:22:
fusion_sdk/calvin_files/parsers/src/FileHeaderReader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/parsers/src/GenericFileReader.cpp:23:
fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.h:35: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp -o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:29: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp: In function `void InitializeRandomNumberGenerator()':
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:50: warning: cast from pointer to integer of different size
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp: In constructor `affymetrix_calvin_utilities::AffymetrixGuid::AffymetrixGuid()':
fusion_sdk/calvin_files/utils/src/AffymetrixGuid.cpp:66: warning: unused variable 'nResult'
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/utils/src/DateTime.cpp -o fusion_sdk/calvin_files/utils/src/DateTime.o
fusion_sdk/calvin_files/utils/src/DateTime.cpp:33: warning: ignoring #pragma warning 
fusion_sdk/calvin_files/utils/src/DateTime.cpp: In static member function `static affymetrix_calvin_utilities::DateTime affymetrix_calvin_utilities::DateTime::Parse(std::wstring)':
fusion_sdk/calvin_files/utils/src/DateTime.cpp:160: warning: comparison between signed and unsigned integer expressions
fusion_sdk/calvin_files/utils/src/DateTime.cpp:172: warning: comparison between signed and unsigned integer expressions
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/utils/src/FileUtils.cpp -o fusion_sdk/calvin_files/utils/src/FileUtils.o
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In static member function `static std::list<std::string, std::allocator<std::string> > affymetrix_calvin_utilities::FileUtils::ListFiles(const char*, const char*)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/utils/src/StringUtils.cpp -o fusion_sdk/calvin_files/utils/src/StringUtils.o
fusion_sdk/calvin_files/utils/src/StringUtils.cpp:26: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/calvin_files/utils/src/checksum.cpp -o fusion_sdk/calvin_files/utils/src/checksum.o
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/file/BPMAPFileData.cpp -o fusion_sdk/file/BPMAPFileData.o
In file included from fusion_sdk/file/BPMAPFileData.cpp:20:
fusion_sdk/file/BPMAPFileData.h:29: warning: ignoring #pragma warning 
fusion_sdk/file/BPMAPFileData.cpp: In member function `bool affxbpmap::CBPMAPFileData::ReadDataSection()':
fusion_sdk/file/BPMAPFileData.cpp:369: warning: unused variable 'probeIn'
fusion_sdk/file/BPMAPFileData.cpp:370: warning: unused variable 'probeOut'
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affxbpmap::CGDACSequenceItem::CGDACSequenceItem(const affxbpmap::CGDACSequenceItem&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = TagValuePairType, _Alloc = std::allocator<TagValuePairType>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = TagValuePairType, _Alloc = std::allocator<TagValuePairType>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affxbpmap::GDACSequenceHitItemType, _Alloc = std::allocator<affxbpmap::GDACSequenceHitItemType>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = affxbpmap::CGDACSequenceItem, _Alloc = std::allocator<affxbpmap::CGDACSequenceItem>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/file/BPMAPFileWriter.cpp -o fusion_sdk/file/BPMAPFileWriter.o
In file included from fusion_sdk/file/BPMAPFileWriter.h:26,
                 from fusion_sdk/file/BPMAPFileWriter.cpp:20:
fusion_sdk/file/BPMAPFileData.h:29: warning: ignoring #pragma warning 
fusion_sdk/file/BPMAPFileWriter.cpp:34: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In function `int tokenize(const std::string&, std::list<std::string, std::allocator<std::string> >&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In copy constructor `affxbpmapwriter::CGDACSequenceItemWriter::CGDACSequenceItemWriter(const affxbpmapwriter::CGDACSequenceItemWriter&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `bool affxbpmapwriter::CGDACSequenceItemWriter::processHitItem(std::list<std::string, std::allocator<std::string> >&)':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = TagValuePairType, _Alloc = std::allocator<TagValuePairType>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h: In member function `bool affxbpmapwriter::CBPMAPFileWriter::ReadTpmap()':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_list.h:435: warning: '__p' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/file/CDFFileData.cpp -o fusion_sdk/file/CDFFileData.o
In file included from fusion_sdk/file/CDFFileData.cpp:28:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning 
fusion_sdk/file/CDFFileData.cpp:36: warning: ignoring #pragma warning 
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = std::string, _Alloc = std::allocator<std::string>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = affxcdf::CCDFQCProbeSetInformation, _Alloc = std::allocator<affxcdf::CCDFQCProbeSetInformation>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h: In member function `std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = affxcdf::CCDFProbeGroupInformation, _Alloc = std::allocator<affxcdf::CCDFProbeGroupInformation>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_vector.h:715: warning: '__result' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::__uninitialized_fill_n_aux(_ForwardIterator, _Size, const _Tp&, __false_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator<affxcdf::CCDFProbeSetInformation*, std::vector<affxcdf::CCDFProbeSetInformation, std::allocator<affxcdf::CCDFProbeSetInformation> > >, _Size = unsigned int, _Tp = affxcdf::CCDFProbeSetInformation]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In function `_ForwardIterator std::__uninitialized_fill_n_aux(_ForwardIterator, _Size, const _Tp&, __false_type) [with _ForwardIterator = affxcdf::CCDFProbeSetInformation*, _Size = unsigned int, _Tp = affxcdf::CCDFProbeSetInformation]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = affxcdf::CCDFProbeSetInformation, _Alloc = std::allocator<affxcdf::CCDFProbeSetInformation>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h: In member function `void std::vector<_Tp, _Alloc>::_M_fill_insert(__gnu_cxx::__normal_iterator<typename _Alloc::pointer, std::vector<_Tp, _Alloc> >, size_t, const _Tp&) [with _Tp = affxcdf::CCDFProbeGroupInformation, _Alloc = std::allocator<affxcdf::CCDFProbeGroupInformation>]':
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/c++/3.4.5/bits/stl_uninitialized.h:82: warning: '__cur' might be used uninitialized in this function
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/file/CELFileData.cpp -o fusion_sdk/file/CELFileData.o
fusion_sdk/file/CELFileData.cpp:33: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/file/FileIO.cpp -o fusion_sdk/file/FileIO.o
fusion_sdk/file/FileIO.cpp:31: warning: ignoring #pragma warning 
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c fusion_sdk/file/FileWriter.cpp -o fusion_sdk/file/FileWriter.o
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c R_affx_cel_parser.cpp -o R_affx_cel_parser.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionTagValuePairType.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:24,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericData.h:30,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from D:/biocbld/bbs-2.0-bioc/R/include/R.h:49,
                 from R_affx_cel_parser.cpp:10:
D:/biocbld/bbs-2.0-bioc/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/windows.h:52,
                 from fusion_sdk/calvin_files/data/src/DataSet.h:32,
                 from fusion_sdk/calvin_files/data/src/GenericData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELDataAdapterInterface.h:28,
                 from fusion_sdk/calvin_files/fusion/src/FusionCELData.h:27,
                 from R_affx_cel_parser.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c R_affx_cdf_parser.cpp -o R_affx_cdf_parser.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_parser.cpp:1:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
In file included from D:/biocbld/bbs-2.0-bioc/R/include/R.h:49,
                 from R_affx_cdf_parser.cpp:10:
D:/biocbld/bbs-2.0-bioc/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/windows.h:52,
                 from fusion_sdk/file/CDFFileData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_parser.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c R_affx_cdf_extras.cpp -o R_affx_cdf_extras.o
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/file/CDFFileData.h:30: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/GenericDataHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:31,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/GenericDataHeader.h:32: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataSetHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/ColumnInfo.h:34: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/DataGroupHeader.h:26,
                 from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/DataSetHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/FileHeader.h:32,
                 from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/DataGroupHeader.h:29: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/data/src/CDFData.h:27,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/FileHeader.h:35: warning: ignoring #pragma warning 
In file included from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:28,
                 from R_affx_cdf_extras.cpp:1:
fusion_sdk/calvin_files/data/src/CDFData.h:36: warning: ignoring #pragma warning 
In file included from D:/biocbld/bbs-2.0-bioc/R/include/R.h:49,
                 from R_affx_cdf_extras.cpp:9:
D:/biocbld/bbs-2.0-bioc/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/windows.h:52,
                 from fusion_sdk/file/CDFFileData.h:31,
                 from fusion_sdk/calvin_files/fusion/src/FusionCDFData.h:27,
                 from R_affx_cdf_extras.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
g++  -imacros R_affx_constants.h -Ifusion_sdk/calvin_files/array/src -Ifusion_sdk/calvin_files/data/src -Ifusion_sdk/calvin_files/exception/src -Ifusion_sdk/calvin_files/fusion/src -Ifusion_sdk/calvin_files/fusion/src/GCOSAdapter -Ifusion_sdk/calvin_files/fusion/src/CalvinAdapter -Ifusion_sdk/calvin_files/parameter/src -Ifusion_sdk/calvin_files/parsers/src -Ifusion_sdk/calvin_files/portability/src -Ifusion_sdk/calvin_files/template/src -Ifusion_sdk/calvin_files/utils/src -Ifusion_sdk/calvin_files/writers/src -Ifusion_sdk/file -Ifusion_sdk/portability -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.0-bioc/R/include  -Wall -O2   -c R_affx_bpmap_parser.cpp -o R_affx_bpmap_parser.o
In file included from R_affx_bpmap_parser.cpp:1:
fusion_sdk/file/BPMAPFileData.h:29: warning: ignoring #pragma warning 
In file included from D:/biocbld/bbs-2.0-bioc/R/include/R.h:49,
                 from R_affx_bpmap_parser.cpp:12:
D:/biocbld/bbs-2.0-bioc/R/include/R_ext/RS.h:40:1: warning: "ERROR" redefined
In file included from d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/windows.h:52,
                 from fusion_sdk/file/BPMAPFileData.h:30,
                 from R_affx_bpmap_parser.cpp:1:
d:/usr/MinGW/bin/../lib/gcc/mingw32/3.4.5/../../../../include/wingdi.h:313:1: warning: this is the location of the previous definition
R_affx_bpmap_parser.cpp: In function `SEXPREC* R_affx_get_bpmap_file(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
R_affx_bpmap_parser.cpp:368: warning: 'pmx' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:368: warning: 'pmy' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:368: warning: 'mmx' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:368: warning: 'mmy' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:368: warning: 'probeseq' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:368: warning: 'strand' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:368: warning: 'probelength' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:369: warning: 'matchscore' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:369: warning: 'startpos' might be used uninitialized in this function
R_affx_bpmap_parser.cpp:369: warning: 'centerpos' might be used uninitialized in this function
windres -I D:/biocbld/bbs-2.0-bioc/R/include  -i affxparser_res.rc -o affxparser_res.o
g++  -shared -s  -o affxparser.dll affxparser.def fusion_sdk/calvin_files/data/src/CDFData.o fusion_sdk/calvin_files/data/src/CDFProbeGroupInformation.o fusion_sdk/calvin_files/data/src/CDFProbeInformation.o fusion_sdk/calvin_files/data/src/CDFProbeSetInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeInformation.o fusion_sdk/calvin_files/data/src/CDFQCProbeSetInformation.o fusion_sdk/calvin_files/data/src/CELData.o fusion_sdk/calvin_files/data/src/DataGroup.o fusion_sdk/calvin_files/data/src/DataGroupHeader.o fusion_sdk/calvin_files/data/src/DataSet.o fusion_sdk/calvin_files/data/src/DataSetHeader.o fusion_sdk/calvin_files/data/src/FileHeader.o fusion_sdk/calvin_files/data/src/GenericData.o fusion_sdk/calvin_files/data/src/GenericDataHeader.o fusion_sdk/calvin_files/exception/src/ExceptionBase.o fusion_sdk/calvin_files/fusion/src/CalvinAdapter/CalvinCELDataAdapter.o fusion_sdk/calvin_files/fusion/src/FusionBPMAPData.o fusion_sdk/calvin_files/fusion/src/FusionCDFData.o fusion_sdk/calvin_files/fusion/src/FusionCDFQCProbeSetNames.o fusion_sdk/calvin_files/fusion/src/FusionCELData.o fusion_sdk/calvin_files/fusion/src/GCOSAdapter/GCOSCELDataAdapter.o fusion_sdk/calvin_files/parameter/src/ParameterNameValueType.o fusion_sdk/calvin_files/parsers/src/CDFFileReader.o fusion_sdk/calvin_files/parsers/src/CelFileReader.o fusion_sdk/calvin_files/parsers/src/DataGroupHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataGroupReader.o fusion_sdk/calvin_files/parsers/src/DataSetHeaderReader.o fusion_sdk/calvin_files/parsers/src/DataSetReader.o fusion_sdk/calvin_files/parsers/src/FileHeaderReader.o fusion_sdk/calvin_files/parsers/src/FileInput.o fusion_sdk/calvin_files/parsers/src/GenericDataHeaderReader.o fusion_sdk/calvin_files/parsers/src/GenericFileReader.o fusion_sdk/calvin_files/utils/src/AffymetrixGuid.o fusion_sdk/calvin_files/utils/src/DateTime.o fusion_sdk/calvin_files/utils/src/FileUtils.o fusion_sdk/calvin_files/utils/src/StringUtils.o fusion_sdk/calvin_files/utils/src/checksum.o fusion_sdk/file/BPMAPFileData.o fusion_sdk/file/BPMAPFileWriter.o fusion_sdk/file/CDFFileData.o fusion_sdk/file/CELFileData.o fusion_sdk/file/FileIO.o fusion_sdk/file/FileWriter.o R_affx_cel_parser.o R_affx_cdf_parser.o R_affx_cdf_extras.o R_affx_bpmap_parser.o affxparser_res.o  -LD:/biocbld/bbs-2.0-bioc/R/bin -lws2_32   -lR
  ... DLL made
  installing DLL
  installing R files
  save image
  installing inst files
  preparing package affxparser for lazy loading
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'affxparser'
     Formats: text html latex example chm 
  1._Dictionary                     text    html    latex           chm
  2._Cell_coordinates_and_cell_indi text    html    latex           chm
  9._Advanced_-_Cell-index_maps_for text    html    latex           chm
  affxparser-package                text    html    latex           chm
  applyCdfGroups                    text    html    latex   example chm
  cdfAddBaseMmCounts                text    html    latex           chm
  cdfAddPlasqTypes                  text    html    latex           chm
  cdfAddProbeOffsets                text    html    latex           chm
  cdfGetFields                      text    html    latex           chm
  cdfGetGroups                      text    html    latex           chm
  cdfGtypeCelToPQ                   text    html    latex           chm
  cdfHeaderToCelHeader              text    html    latex           chm
  cdfMergeAlleles                   text    html    latex           chm
  cdfMergeStrands                   text    html    latex           chm
  cdfMergeToQuartets                text    html    latex           chm
  cdfOrderBy                        text    html    latex           chm
  cdfOrderColumnsBy                 text    html    latex           chm
  compareCdfs                       text    html    latex           chm
  compareCels                       text    html    latex           chm
  convertCdf                        text    html    latex   example chm
  convertCel                        text    html    latex           chm
  copyCel                           text    html    latex           chm
  createCel                         text    html    latex   example chm
  findCdf                           text    html    latex   example chm
  findFiles                         text    html    latex           chm
  invertMap                         text    html    latex   example chm
  isCelFile                         text    html    latex           chm
  readBpmap                         text    html    latex   example chm
  readCcg                           text    html    latex           chm
  readCcgHeader                     text    html    latex           chm
  readCdf                           text    html    latex           chm
  readCdfCellIndices                text    html    latex           chm
  readCdfGroupNames                 text    html    latex           chm
  readCdfHeader                     text    html    latex   example chm
  readCdfIsPm                       text    html    latex           chm
  readCdfNbrOfCellsPerUnitGroup     text    html    latex   example chm
  readCdfQc                         text    html    latex           chm
  readCdfUnitNames                  text    html    latex   example chm
  readCdfUnits                      text    html    latex   example chm
  readCdfUnitsWriteMap              text    html    latex   example chm
  readCel                           text    html    latex   example chm
  readCelHeader                     text    html    latex   example chm
  readCelIntensities                text    html    latex   example chm
  readCelRectangle                  text    html    latex   example chm
  readCelUnits                      text    html    latex   example chm
  updateCel                         text    html    latex   example chm
  updateCelUnits                    text    html    latex   example chm
  writeCdf                          text    html    latex           chm
  writeCdfHeader                    text    html    latex           chm
  writeCdfQcUnits                   text    html    latex           chm
  writeCdfUnits                     text    html    latex           chm
  writeCelHeader                    text    html    latex           chm
  writeTpmap                        text    html    latex   example chm
  zipping help files
Microsoft HTML Help Compiler 4.74.8702



Compiling d:\biocbld\bbs-2.0-bioc\meat\R.INSTALL.3700\affxparser\chm\affxparser.chm





Compile time: 0 minutes, 0 seconds

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209	Local links

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Created d:\biocbld\bbs-2.0-bioc\meat\R.INSTALL.3700\affxparser\chm\affxparser.chm, 94,271 bytes

Compression decreased file by 147,831 bytes.

  adding MD5 sums

packaged installation of package 'affxparser' as affxparser_1.8.3.zip
* DONE (affxparser)