Package: affycoretools

Version: 1.8.1

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check affycoretools_1.8.1.tar.gz

RetCode: 0

Time: 224.7 seconds

Status: OK

CheckDir: affycoretools.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/affycoretools.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'affycoretools/DESCRIPTION' ... OK
* this is package 'affycoretools' version '1.8.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affycoretools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating affycoretools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating affycoretools-manual.tex ... OK
* checking affycoretools-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/affycoretools.Rcheck


---------- Making package affycoretools ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'affycoretools'
     Formats: text html latex example chm 
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Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\affycoretools.Rcheck\00_pkg_src\affycoretools\chm\affycoretools.chm


Compile time: 0 minutes, 0 seconds
33	Topics
53	Local links
0	Internet links
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\affycoretools.Rcheck\00_pkg_src\affycoretools\chm\affycoretools.chm, 62,202 bytes
Compression decreased file by 79,952 bytes.
  preparing package affycoretools for lazy loading
Loading required package: affy
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affyio
Loading required package: limma
Loading required package: GOstats
Loading required package: graph
Loading required package: GO
Loading required package: annotate
Loading required package: RBGL
Loading required package: Category
Loading required package: KEGG
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Matrix
Loading required package: lattice
Loading required package: biomaRt
Loading required package: XML

Attaching package: 'XML'


	The following object(s) are masked from package:graph :

	 addNode 

Loading required package: RCurl

Attaching package: 'biomaRt'


	The following object(s) are masked from package:annotate :

	 getGO 

Loading required package: gcrma
Loading required package: matchprobes
Loading required package: xtable
Loading required package: annaffy
  adding MD5 sums

* DONE (affycoretools)