Package: annotationTools

Version: 1.4.0

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check annotationTools_1.4.0.tar.gz

RetCode: 0

Time: 57.5 seconds

Status: OK

CheckDir: annotationTools.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/annotationTools.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'annotationTools/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'annotationTools' version '1.4.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annotationTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating annotationTools-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating annotationTools-manual.tex ... OK
* checking annotationTools-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/annotationTools.Rcheck


---------- Making package annotationTools ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'annotationTools'
     Formats: text html latex example chm 
  HG-U133_Plus_2_annot_part         text    html    latex           chm
  HG-U133_Plus_2_ortholog_part      text    html    latex           chm
  Mouse430_2_annot_part             text    html    latex           chm
  annot_HGU133A                     text    html    latex           chm
  compactList                       text    html    latex   example chm
  getANNOTATION                     text    html    latex   example chm
  getGENEID                         text    html    latex   example chm
  getGENEONTOLOGY                   text    html    latex   example chm
  getGENESYMBOL                     text    html    latex   example chm
  getGENETITLE                      text    html    latex   example chm
  getHOMOLOG                        text    html    latex   example chm
  getMULTIANNOTATION                text    html    latex   example chm
  getPROBESET                       text    html    latex   example chm
  homologene_part                   text    html    latex           chm
  listToCharacterVector             text    html    latex   example chm
  ortho                             text    html    latex           chm
  ps2ps                             text    html    latex   example chm
  table_human                       text    html    latex           chm
  table_mouse                       text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\annotationTools.Rcheck\00_pkg_src\annotationTools\chm\annotationTools.chm


Compile time: 0 minutes, 0 seconds
20	Topics
45	Local links
8	Internet links
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\annotationTools.Rcheck\00_pkg_src\annotationTools\chm\annotationTools.chm, 35,920 bytes
Compression decreased file by 33,871 bytes.
  adding MD5 sums

* DONE (annotationTools)