Package: biomaRt

Version: 1.10.1

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check biomaRt_1.10.1.tar.gz

RetCode: 0

Time: 226.7 seconds

Status: WARNINGS

CheckDir: biomaRt.Rcheck

Warnings: 1

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/biomaRt.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'biomaRt/DESCRIPTION' ... OK
* this is package 'biomaRt' version '1.10.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'biomaRt' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  RMySQL
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating biomaRt-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating biomaRt-manual.tex ... OK
* checking biomaRt-manual.tex ... OK

WARNING: There was 1 warning, see
  D:/biocbld/bbs-2.0-bioc/meat/biomaRt.Rcheck/00check.log
for details

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/biomaRt.Rcheck


---------- Making package biomaRt ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  save image
Loading required package: XML
Loading required package: RCurl
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'biomaRt'
     Formats: text html latex example chm 
  Mart-class                        text    html    latex           chm
  attributeSummary                  text    html    latex   example chm
  exportFASTA                       text    html    latex   example chm
  filterSummary                     text    html    latex   example chm
  getAffyArrays                     text    html    latex   example chm
  getBM                             text    html    latex   example chm
  getFeature                        text    html    latex   example chm
  getGO                             text    html    latex   example chm
  getGene                           text    html    latex   example chm
  getHomolog                        text    html    latex   example chm
  getLDS                            text    html    latex   example chm
  getSNP                            text    html    latex   example chm
  getSequence                       text    html    latex   example chm
  listAttributes                    text    html    latex   example chm
  listDatasets                      text    html    latex   example chm
  listFilters                       text    html    latex   example chm
  listMarts                         text    html    latex   example chm
  martDisconnect                    text    html    latex   example chm
  martTable-class                   text    html    latex           chm
  parseAttributes                   text    html    latex           chm
  parseFilters                      text    html    latex           chm
  useDataset                        text    html    latex   example chm
  useMart                           text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\biomaRt.Rcheck\00_pkg_src\biomaRt\chm\biomaRt.chm


Compile time: 0 minutes, 0 seconds
24	Topics
46	Local links
8	Internet links
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\biomaRt.Rcheck\00_pkg_src\biomaRt\chm\biomaRt.chm, 33,622 bytes
Compression decreased file by 29,474 bytes.
  adding MD5 sums

* DONE (biomaRt)