Package: pcaMethods

Version: 1.12.0

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check pcaMethods_1.12.0.tar.gz

RetCode: 0

Time: 870.6 seconds

Status: OK

CheckDir: pcaMethods.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/pcaMethods.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'pcaMethods/DESCRIPTION' ... OK
* this is package 'pcaMethods' version '1.12.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pcaMethods' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating pcaMethods-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating pcaMethods-manual.tex ... OK
* checking pcaMethods-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/pcaMethods.Rcheck


---------- Making package pcaMethods ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  save image
Loading required package: MASS
Loading required package: pls

Attaching package: 'pls'


	The following object(s) are masked from package:stats :

	 loadings 

Creating a new generic function for "print" in "pcaMethods"
Creating a new generic function for "summary" in "pcaMethods"
Creating a new generic function for "fitted" in "pcaMethods"
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'pcaMethods'
     Formats: text html latex example chm 
  Q2                                text    html    latex   example chm
  asExprSet                         text    html    latex           chm
  bpca                              text    html    latex   example chm
  checkData                         text    html    latex           chm
  class.nlpcaNet                    text    html    latex           chm
  class.nniRes                      text    html    latex           chm
  class.pcaRes                      text    html    latex           chm
  fitted.pcaRes                     text    html    latex           chm
  helix                             text    html    latex           chm
  kEstimate                         text    html    latex   example chm
  kEstimateFast                     text    html    latex   example chm
  llsImpute                         text    html    latex   example chm
  metaboliteData                    text    html    latex           chm
  metaboliteDataComplete            text    html    latex           chm
  nipalsPca                         text    html    latex   example chm
  nlpca                             text    html    latex   example chm
  nni                               text    html    latex   example chm
  pca                               text    html    latex   example chm
  plotPcs                           text    html    latex   example chm
  plotR2                            text    html    latex           chm
  ppca                              text    html    latex   example chm
  prep                              text    html    latex   example chm
  robustPca                         text    html    latex   example chm
  robustSvd                         text    html    latex   example chm
  slplot                            text    html    latex   example chm
  svdImpute                         text    html    latex   example chm
  svdPca                            text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\pcaMethods.Rcheck\00_pkg_src\pcaMethods\chm\pcaMethods.chm


Compile time: 0 minutes, 0 seconds
28	Topics
107	Local links
3	Internet links
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\pcaMethods.Rcheck\00_pkg_src\pcaMethods\chm\pcaMethods.chm, 65,685 bytes
Compression decreased file by 53,774 bytes.
  adding MD5 sums

* DONE (pcaMethods)