Back to the "Multiple platform build/check report"
| Package 171/214 | Hostname | OS | Arch | BUILD | CHECK | BUILD BIN |
rflowcyt1.8.0N. LeMeurLast Changed Date: 2007-04-24 11:21:48 -0700 Last Changed Rev: 24214 | lamb1 | Linux (SUSE 10.1) | x86_64 | OK | WARNINGS | |
| wellington | Linux (SUSE 9.2) | i686 | OK | [ WARNINGS ] | ||
| lemming | Windows Server 2003 (32-bit) | x64 | OK | WARNINGS | OK |
| Package: rflowcyt |
| Version: 1.8.0 |
| Command: /loc/biocbuild/bbs-2.0-bioc/R/bin/R CMD check rflowcyt_1.8.0.tar.gz |
| RetCode: 0 |
| Time: 1210.3 seconds |
| Status: WARNINGS |
| CheckDir: rflowcyt.Rcheck |
| Warnings: 2 |
* checking for working latex ... OK
* using log directory '/extra/loc/biocbuild/bbs-2.0-bioc/meat/rflowcyt.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'rflowcyt/DESCRIPTION' ... OK
* this is package 'rflowcyt' version '1.8.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rflowcyt' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
parallel:
function(x, data, ...)
parallel.coordinates:
function(x, varlabpos, variable.names, my.ylab, my.ylim, at.y,
each.ylab, scaled, group, group.lty, group.col, group.lwd,
superimpose)
See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
generic '[[<-' and siglist 'FCS,ANY,ANY'
generic '[[<-' and siglist 'FCSmetadata,ANY,ANY'
generic '[[' and siglist 'FCS,ANY,ANY'
generic '[[' and siglist 'FCSmetadata,ANY,ANY'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating rflowcyt-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/extra/loc/biocbuild/bbs-2.0-bioc/meat/rflowcyt.Rcheck/tests'
Running 'FCSclass-tests.R'
Running 'FCSgateclass-tests.R'
Running 'FCSmetadataclass-tests.R'
Running 'fluors.FCS.R'
Running 'read.FCS-tests.R'
Running 'runflowcytests-tests.R'
make[1]: Leaving directory `/extra/loc/biocbuild/bbs-2.0-bioc/meat/rflowcyt.Rcheck/tests'
OK
* checking package vignettes in 'inst/doc' ... OK
* creating rflowcyt-manual.tex ... OK
* checking rflowcyt-manual.tex ... OK
WARNING: There were 2 warnings, see
/extra/loc/biocbuild/bbs-2.0-bioc/meat/rflowcyt.Rcheck/00check.log
for details
rflowcyt.Rcheck/00install.out:
* Installing *source* package 'rflowcyt' ...
** R
** inst
** preparing package for lazy loading
Loading required package: survival
Loading required package: splines
Loading required package: xtable
Loading required package: KernSmooth
KernSmooth 2.22 installed
Copyright M. P. Wand 1997
Loading required package: MASS
Loading required package: grid
Loading required package: hexbin
Loading required package: lattice
Loading required package: rfcdmin
Loading required package: fields
fields is loaded use help(fields) for an overview of this library
Some name changes have been made to several common functions:
exp.-> Exp. and rad. -> Rad. See help( Exp.cov)
Loading required package: locfit
Loading required package: akima
locfit 1.5-3 2006-04-06
Loading required package: splancs
Loading required package: sp
Spatial Point Pattern Analysis Code in S-Plus
Version 2 - Spatial and Space-Time analysis
Scalable Robust Estimators with High Breakdown Point (version 0.3-06)
Creating a new generic function for "print" in "rflowcyt"
** help
>>> Building/Updating help pages for package 'rflowcyt'
Formats: text html latex example
ContourScatterPlot text html latex example
FCS-class text html latex example
FCSgate-class text html latex example
FCSggobi-class text html latex example
FCSmetadata-class text html latex example
FCSsummary-class text html latex example
FHCRC.HVTNFCS text html latex example
ImageParCoord text html latex example
KS.flowcytest text html latex example
MODE text html latex example
PercentPos.FCS text html latex example
ProbBin.FCS text html latex example
ProbBin.flowcytest text html latex example
ROC.FCS text html latex example
VRC.HVTNFCS text html latex example
WLR.flowcytest text html latex example
add.parallel.coordinates text html latex example
add.parallelCoordinates text html latex example
addParameter-methods text html latex
boxplot.FCS text html latex example
breakpoints.ProbBin text html latex example
checkvars-methods text html latex
coerce-FCSformat text html latex example
coerce-methods text html latex
convertS3toS4 text html latex example
createGate text html latex example
cytoSet-class text html latex example
dim.FCS-methods text html latex
emp.f text html latex example
equals-methods text html latex
extractGateHistory text html latex example
extractGatedData text html latex example
fcs.type text html latex example
fixvars-methods text html latex
fluors-methods text html latex
gate.IPC text html latex example
get.h text html latex example
get.num.modes text html latex example
get.p text html latex example
ggobi-methods text html latex
legend.CSP text html latex example
make.grid text html latex example
metaData-methods text html latex
pairs.CSP text html latex example
parallel.coordinates text html latex example
parallelCoordinates text html latex example
pkci2.flowcytest text html latex example
plot-methods text html latex
plot.ProbBin.FCS text html latex example
plot2sets.FCS text html latex example
plotECDF.FCS text html latex example
plotQA.FCS text html latex example
plotdensity.FCS text html latex example
plotvar.FCS text html latex example
print-methods text html latex
read.FCS text html latex example
read.series.FCS text html latex example
rect.box.idx text html latex example
rflowcyt-defunct text html latex
runflowcytests text html latex example
show-methods text html latex
showgate.FCS text html latex example
standard text html latex example
subset-methods text html latex
subset2-methods text html latex
subset2assign-methods text html latex
subsetassign-methods text html latex
summary-methods text html latex
summary.ProbBin.FCS text html latex example
xgobi.FCS text html latex example
** building package indices ...
* DONE (rflowcyt)