Package: siggenes

Version: 1.10.1

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check siggenes_1.10.1.tar.gz

RetCode: 0

Time: 148.5 seconds

Status: OK

CheckDir: siggenes.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/siggenes.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'siggenes/DESCRIPTION' ... OK
* this is package 'siggenes' version '1.10.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'siggenes' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating siggenes-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating siggenes-manual.tex ... OK
* checking siggenes-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/siggenes.Rcheck


---------- Making package siggenes ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  installing R files
  installing inst files
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'siggenes'
     Formats: text html latex example chm 
  EBAM-class                        text    html    latex   example chm
  FindA0-class                      text    html    latex           chm
  SAM-class                         text    html    latex   example chm
  cat.ebam                          text    html    latex           chm
  cat.stat                          text    html    latex           chm
  d.stat                            text    html    latex           chm
  delta.plot                        text    html    latex   example chm
  denspr                            text    html    latex           chm
  ebam                              text    html    latex   example chm
  find.a0                           text    html    latex   example chm
  fudge2                            text    html    latex           chm
  help.ebam                         text    html    latex   example chm
  help.finda0                       text    html    latex   example chm
  help.sam                          text    html    latex   example chm
  link.genes                        text    html    latex           chm
  link.siggenes                     text    html    latex           chm
  list.siggenes                     text    html    latex   example chm
  pi0.est                           text    html    latex   example chm
  plotArguments                     text    html    latex           chm
  plotFindArguments                 text    html    latex           chm
  qvalue.cal                        text    html    latex   example chm
  sam                               text    html    latex   example chm
  sam.plot2                         text    html    latex   example chm
  siggenes-internal                 text    html    latex           chm
  siggenes2excel                    text    html    latex           chm
  siggenes2html                     text    html    latex           chm
  sumSAM-class                      text    html    latex           chm
  wilc.ebam                         text    html    latex           chm
  wilc.stat                         text    html    latex           chm
  z.ebam                            text    html    latex           chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\siggenes.Rcheck\00_pkg_src\siggenes\chm\siggenes.chm


Compile time: 0 minutes, 0 seconds
31	Topics
194	Local links
2	Internet links
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\siggenes.Rcheck\00_pkg_src\siggenes\chm\siggenes.chm, 80,035 bytes
Compression decreased file by 112,471 bytes.
  preparing package siggenes for lazy loading
Loading required package: multtest
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Creating a new generic function for "print" in "siggenes"
Creating a new generic function for "identify" in "siggenes"
  adding MD5 sums

* DONE (siggenes)