Package: vsn

Version: 2.2.0

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check vsn_2.2.0.tar.gz

RetCode: 0

Time: 989.9 seconds

Status: OK

CheckDir: vsn.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-bioc/meat/vsn.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'vsn/DESCRIPTION' ... OK
* this is package 'vsn' version '2.2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'vsn' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating vsn-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating vsn-manual.tex ... OK
* checking vsn-manual.tex ... OK

installing R.css in D:/biocbld/bbs-2.0-bioc/meat/vsn.Rcheck


---------- Making package vsn ------------
  adding build stamp to DESCRIPTION
  installing NAMESPACE file and metadata
  making DLL ...
making init.d from init.c
making vsn.d from vsn.c
making vsn2.d from vsn2.c
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c init.c -o init.o
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c vsn.c -o vsn.o
gcc   -Id:/biocbld/bbs-2.0-bioc/R/include  -Wall -O3 -std=gnu99   -c vsn2.c -o vsn2.o
vsn2.c: In function `vsn2_trsf':
vsn2.c:445: warning: unused variable `dimy'
windres -I d:/biocbld/bbs-2.0-bioc/R/include  -i vsn_res.rc -o vsn_res.o
gcc  -shared -s  -o vsn.dll vsn.def init.o vsn.o vsn2.o vsn_res.o  -Ld:/biocbld/bbs-2.0-bioc/R/bin    -lR
  ... DLL made
  installing DLL
  installing R files
  installing inst files
  installing data files
  installing man source files
  installing indices
  not zipping data
  installing help
 >>> Building/Updating help pages for package 'vsn'
     Formats: text html latex example chm 
  class.vsn                         text    html    latex   example chm
  class.vsnInput                    text    html    latex   example chm
  getIntensityMatrix                text    html    latex   example chm
  justvsn                           text    html    latex   example chm
  kidney                            text    html    latex   example chm
  lymphoma                          text    html    latex   example chm
  meanSdPlot                        text    html    latex   example chm
  normalize.AffyBatch.vsn           text    html    latex   example chm
  sagmbSimulateData                 text    html    latex   example chm
  vsn                               text    html    latex   example chm
  vsn2                              text    html    latex   example chm
  vsn2trsf                          text    html    latex   example chm
  vsnLikelihood                     text    html    latex   example chm
  vsnPlotPar                        text    html    latex   example chm
  vsnh                              text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-bioc\meat\vsn.Rcheck\00_pkg_src\vsn\chm\vsn.chm


Compile time: 0 minutes, 0 seconds
16	Topics
123	Local links
13	Internet links
1	Graphic


Created d:\biocbld\bbs-2.0-bioc\meat\vsn.Rcheck\00_pkg_src\vsn\chm\vsn.chm, 49,608 bytes
Compression decreased file by 38,038 bytes.
  preparing package vsn for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: affy
Loading required package: affyio
Loading required package: limma
Creating a new generic function for "logLik" in "vsn"
  adding MD5 sums

* DONE (vsn)