Package: a4Base

Version: 1.4.1

Command: rm -rf a4Base.buildbin-libdir && mkdir a4Base.buildbin-libdir && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=a4Base.buildbin-libdir a4Base_1.4.1.tar.gz >a4Base-install.out 2>&1 && E:\biocbld\bbs-2.10-bioc\R\bin\R.exe CMD check --library=a4Base.buildbin-libdir --install="check:a4Base-install.out" --force-multiarch --no-vignettes --timings a4Base_1.4.1.tar.gz && mv a4Base.buildbin-libdir/* a4Base.Rcheck/ && rmdir a4Base.buildbin-libdir

StartedAt: 2012-09-23 23:23:27 -0700 (Sun, 23 Sep 2012)

EndedAt: 2012-09-23 23:30:14 -0700 (Sun, 23 Sep 2012)

EllapsedTime: 407.4 seconds

RetCode: 0

Status:  OK

CheckDir: a4Base.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.10-bioc/meat/a4Base.Rcheck'
* using R version 2.15.1 (2012-06-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'a4Base/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'a4Base' version '1.4.1'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
  'gridSVG' 'JavaGD'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'a4Base' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
a4palette: warning in rgb(9, 53, 122, alpha = alpha, max = 255):
  partial argument match of 'max' to 'maxColorValue'
a4palette: warning in rgb(42, 142, 191, alpha = alpha, max = 255):
  partial argument match of 'max' to 'maxColorValue'
a4palette: warning in rgb(148, 198, 223, alpha = alpha, max = 255):
  partial argument match of 'max' to 'maxColorValue'
a4palette: warning in rgb(35, 125, 38, alpha = alpha, max = 255):
  partial argument match of 'max' to 'maxColorValue'
a4palette: warning in rgb(127, 195, 28, alpha = alpha, max = 255):
  partial argument match of 'max' to 'maxColorValue'
a4palette: warning in rgb(191, 225, 141, alpha = alpha, max = 255):
  partial argument match of 'max' to 'maxColorValue'
heatmap.expressionSet: warning in grid.layout(nrow = heatmap.grid.nrow,
  ncol = heatmap.grid.ncol, width = grid.layout.col.widths, heights =
  grid.layout.row.heights): partial argument match of 'width' to
  'widths'
heatmap.expressionSet: warning in grid.layout(nrow = 1, ncol = 5, width
  = unit(c(1, 1, 30, legend.width[1], 1), c("null", "grobwidth",
  "points", attr(legend.width, "unit"), "null"), c(vector(mode =
  "list", length = 1), list(title.toplot.grob), vector(mode = "list",
  length = 3)))): partial argument match of 'width' to 'widths'
plotLogRatio: warning in viewport(x = 0, y = 0, w = 1, h = 1, just =
  c("left", "bottom"), layout = grid.layout(nrow = nr + 14, ncol = 1)):
  partial argument match of 'w' to 'width'
plotLogRatio: warning in viewport(x = 0, y = 0, w = 1, h = 1, just =
  c("left", "bottom"), layout = grid.layout(nrow = nr + 14, ncol = 1)):
  partial argument match of 'h' to 'height'
replicates: warning in vector("numeric", len = length(x)): partial
  argument match of 'len' to 'length'
plotLogRatio: no visible global function definition for 'JavaGD'
plotLogRatio: no visible global function definition for 'grid.garnish'
plotLogRatio: no visible global function definition for
  'grid.hyperlink'
plotLogRatio: no visible global function definition for 'grid.script'
plotLogRatio: no visible global function definition for 'gridToSVG'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'E:/biocbld/bbs-2.10-bioc/meat/a4Base.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'a4Base' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'a4Base' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'a4Base' as a4Base_1.4.1.zip

* DONE (a4Base)