Package: categoryCompare

Version: 1.0.0

Command: /home/hpages/test-puck5/bbs-2.10-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data categoryCompare

StartedAt: 2012-03-31 23:11:32 -0700 (Sat, 31 Mar 2012)

EndedAt: 2012-03-31 23:13:28 -0700 (Sat, 31 Mar 2012)

EllapsedTime: 115.6 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

* checking for file 'categoryCompare/DESCRIPTION' ... OK
* preparing 'categoryCompare':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following object(s) are masked from 'package:stats':

    xtabs

The following object(s) are masked from 'package:base':

    Filter, Find, Map, Position, Reduce,
    anyDuplicated, cbind, colnames, duplicated, eval,
    get, intersect, lapply, mapply, mget, order,
    paste, pmax, pmax.int, pmin, pmin.int, rbind,
    rep.int, rownames, sapply, setdiff, table,
    tapply, union, unique

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view
    with 'browseVignettes()'. To cite Bioconductor,
    see 'citation("Biobase")', and for packages
    'citation("pkgname")'.

Loading required package: AnnotationDbi
Loading required package: org.Hs.eg.db
Loading required package: DBI



Loading required package: Category


KEGG.db contains mappings based on older data because
  the original resource was removed from the the
  public domain before the most recent update was
  produced. This package should now be considered
  deprecated and future versions of Bioconductor may
  not have it available.  One possible alternative to
  consider is to look at the reactome.db package

Warning in makeValidccLists(.Object) : NAs introduced by coercion

Error: processing vignette 'categoryCompare_vignette.Rnw' failed with diagnostics:
 chunk 14 (label = ExamineResultsBP) 
Error in function (type, msg, asError = TRUE)  : 
  Recv failure: Connection reset by peer
Execution halted