Package: deepSNV

Version: 1.2.0

Command: /home/hpages/test-puck5/bbs-2.10-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data deepSNV

StartedAt: 2012-03-31 23:03:07 -0700 (Sat, 31 Mar 2012)

EndedAt: 2012-03-31 23:03:39 -0700 (Sat, 31 Mar 2012)

EllapsedTime: 32.7 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

* checking for file 'deepSNV/DESCRIPTION' ... OK
* preparing 'deepSNV':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Rsamtools
Loading required package: IRanges
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following object(s) are masked from 'package:stats':

    xtabs

The following object(s) are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, cbind,
    colnames, duplicated, eval, get, intersect, lapply, mapply, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int,
    rownames, sapply, setdiff, table, tapply, union, unique

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: VGAM
Loading required package: splines
Loading required package: stats4

Attaching package: 'VGAM'

The following object(s) are masked from 'package:stats4':

    coef

The following object(s) are masked from 'package:splines':

    bs, ns

The following object(s) are masked from 'package:BiocGenerics':

    residuals, weights

The following object(s) are masked from 'package:stats':

    case.names, coef, coefficients, df.residual, fitted, fitted.values,
    formula, poly, residuals, variable.names, weights

The following object(s) are masked from 'package:base':

    identity, scale.default

Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet,  : 
  Running 'texi2dvi' on 'deepSNV.tex' failed.
LaTeX errors:
! LaTeX Error: \mathbf allowed only in math mode.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
Calls: <Anonymous> -> texi2pdf -> texi2dvi
Execution halted