eisa 1.8.0
Gabor Csardi
| Snapshot Date: 2012-03-31 17:01:49 -0700 (Sat, 31 Mar 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/eisa | | Last Changed Rev: 64678 / Revision: 64719 | | Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012) |
| lamb2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| puck5 | Linux (Ubuntu 12.04) / x86_64 | OK | [ OK ] | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| petty | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* using log directory '/loc/home/hpages/test-puck5/bbs-2.10-bioc/meat/eisa.Rcheck'
* using R version 2.15.0 RC (2012-03-22 r58802)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'eisa/DESCRIPTION' ... OK
* this is package 'eisa' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'eisa' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
annotate: no visible binding for global variable 'ALL'
expPlot: warning in matrix(c(5, 2, 4, 6, 1, 3, 7, 8, 9), nc = 3, byrow
= TRUE): partial argument match of 'nc' to 'ncol'
expPlot: warning in axis(1, at = at1, label = label1, cex.axis = 2):
partial argument match of 'label' to 'labels'
expPlot: warning in axis(2, at = at2, label = label2, cex.axis = 2,
tick = FALSE): partial argument match of 'label' to 'labels'
expPlot: warning in matrix(c(0, 0, 0, 0), nr = 1, nc = 1): partial
argument match of 'nr' to 'nrow'
expPlot: warning in matrix(c(0, 0, 0, 0), nr = 1, nc = 1): partial
argument match of 'nc' to 'ncol'
expPlot: warning in axis(2, at = c(-1, 0, 1), label = c(-1, 0, 1),
cex.axis = 2): partial argument match of 'label' to 'labels'
expPlot: warning in axis(4, at = c(-1, 0, 1), label = c(-1, 0, 1),
cex.axis = 2): partial argument match of 'label' to 'labels'
expPlot: warning in axis(4, at = at3, label = label2, cex.axis = 2):
partial argument match of 'label' to 'labels'
expPlotColbar: warning in matrix((-30):30, nc = 1): partial argument
match of 'nc' to 'ncol'
expPlotColbar: warning in axis(3, at = at, label = label, tick = FALSE,
line = -1, cex.axis = 1.5): partial argument match of 'label' to
'labels'
isa.autogen.module: warning in png(file = paste(sep = "", target.dir,
"/expression-", m, ".png"), width = ep$width, height = ep$height):
partial argument match of 'file' to 'filename'
isa.autogen.module: warning in png(file = paste(sep = "", target.dir,
"/expcolbar-", m, ".png"), width = 840, height = 56): partial
argument match of 'file' to 'filename'
isa.autogen.module : gp: warning in png(file = filename, width =
gop$width * 4, height = gop$height * 4): partial argument match of
'file' to 'filename'
isa.autogen.module: warning in png(file = paste(sep = "", target.dir,
"/condplot-", m, ".png"), width = 1200, height = 400): partial
argument match of 'file' to 'filename'
overlap: warning in graph.empty(n = nrow(B), dir = FALSE): partial
argument match of 'dir' to 'directed'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: 'affy'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
'/loc/home/hpages/test-puck5/bbs-2.10-bioc/meat/eisa.Rcheck/00check.log'
for details.