hexbin 1.29.0
Nicholas Lewin-Koh
| Snapshot Date: 2011-11-06 07:21:31 -0800 (Sun, 06 Nov 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/hexbin | | Last Changed Rev: 59924 / Revision: 60085 | | Last Changed Date: 2011-10-31 16:12:28 -0700 (Mon, 31 Oct 2011) |
| lamb2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK |
| petty | Mac OS X Snow Leopard (10.6.7) / i386 | OK | OK | OK |
* using log directory 'E:/biocbld/bbs-2.10-bioc/meat/hexbin.Rcheck'
* using R Under development (unstable) (2011-10-28 r57459)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hexbin/DESCRIPTION' ... OK
* this is package 'hexbin' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'hexbin' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mixcolors: no visible global function definition for 'coords'
* checking Rd files ... NOTE
prepare_Rd: NHANES.Rd:41-43: Dropping empty section \references
prepare_Rd: hexList.Rd:46-48: Dropping empty section \examples
prepare_Rd: hexVP.abline.Rd:43-45: Dropping empty section \examples
prepare_Rd: hexViewport.Rd:25-27: Dropping empty section \details
prepare_Rd: panel.hexgrid.Rd:15-16: Dropping empty section \details
prepare_Rd: panel.hexgrid.Rd:23-24: Dropping empty section \examples
prepare_Rd: panel.hexloess.Rd:28-29: Dropping empty section \details
prepare_Rd: panel.hexloess.Rd:41-42: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
Running 'hdiffplot.R'
Comparing 'hdiffplot.Rout' to 'hdiffplot.Rout.save' ...9c9
< Buggy version of Kinderman-Ramage generator used
---
> Buggy version of Kinderman-Ramage generator used.
24,25c24,25
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
43c43
< ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ...
---
> ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.90 ...
64,65c64,65
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
84,85c84,85
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
89c89
< ..@ ybnds : num [1:2] -4.23 4.7
---
> ..@ ybnds : num [1:2] -4.23 4.70
109,110c109,110
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
114c114
< ..@ ybnds : num [1:2] -4.23 4.7
---
> ..@ ybnds : num [1:2] -4.23 4.70
Running 'hray.R'
Running 'large.R'
Running 'viewp-ex.R'
OK
** running tests for arch 'x64'
Running 'hdiffplot.R'
Comparing 'hdiffplot.Rout' to 'hdiffplot.Rout.save' ...9c9
< Buggy version of Kinderman-Ramage generator used
---
> Buggy version of Kinderman-Ramage generator used.
24,25c24,25
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
43c43
< ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ...
---
> ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.90 ...
64,65c64,65
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
84,85c84,85
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
89c89
< ..@ ybnds : num [1:2] -4.23 4.7
---
> ..@ ybnds : num [1:2] -4.23 4.70
109,110c109,110
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
114c114
< ..@ ybnds : num [1:2] -4.23 4.7
---
> ..@ ybnds : num [1:2] -4.23 4.70
Running 'hray.R'
Running 'large.R'
Running 'viewp-ex.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
install for i386
* installing *source* package 'hexbin' ...
** libs
gfortran -O3 -mtune=core2 -c hbin.f -o hbin.o
gfortran -O3 -mtune=core2 -c hcell.f -o hcell.o
gfortran -O3 -mtune=core2 -c herode.f -o herode.o
gfortran -O3 -mtune=core2 -c hsm.f -o hsm.o
gcc -shared -s -static-libgcc -o hexbin.dll tmp.def hbin.o hcell.o herode.o hsm.o -Ld:/RCompile/CRANpkg/extralibs/local/lib -lgfortran -LE:/biocbld/BBS-2˜1.10-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/hexbin.buildbin-libdir/hexbin/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'plot' from package 'graphics' in package 'hexbin'
Creating a generic function for 'summary' from package 'base' in package 'hexbin'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'hexagon_binning.Rnw'
** testing if installed package can be loaded
add DLL for x64
* installing *source* package 'hexbin' ...
** libs
x86_64-w64-mingw32-gfortran -O2 -mtune=core2 -c hbin.f -o hbin.o
x86_64-w64-mingw32-gfortran -O2 -mtune=core2 -c hcell.f -o hcell.o
x86_64-w64-mingw32-gfortran -O2 -mtune=core2 -c herode.f -o herode.o
x86_64-w64-mingw32-gfortran -O2 -mtune=core2 -c hsm.f -o hsm.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o hexbin.dll tmp.def hbin.o hcell.o herode.o hsm.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib -lgfortran -LE:/biocbld/BBS-2˜1.10-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.10-bioc/meat/hexbin.buildbin-libdir/hexbin/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'hexbin' as hexbin_1.29.0.zip
* DONE (hexbin)