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Package 363/532HostnameOS / ArchBUILDCHECKBUILD BIN
ontoTools 1.33.1
Vince Carey
Snapshot Date: 2012-02-28 17:01:26 -0800 (Tue, 28 Feb 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ontoTools
Last Changed Rev: 62450 / Revision: 63265
Last Changed Date: 2012-02-01 10:40:39 -0800 (Wed, 01 Feb 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.7) / i386  OK  OK [ OK ]

Summary

Package: ontoTools
Version: 1.33.1
Command: rm -rf ontoTools.buildbin-libdir && mkdir ontoTools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ontoTools_1.33.1.tar.gz /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R ontoTools.buildbin-libdir
StartedAt: 2012-02-29 02:38:59 -0800 (Wed, 29 Feb 2012)
EndedAt: 2012-02-29 02:39:24 -0800 (Wed, 29 Feb 2012)
EllapsedTime: 25.0 seconds
RetCode: 0
Status:  OK 
PackageFile: ontoTools_1.33.1.tgz
PackageFileSize: 2.374 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ontoTools.buildbin-libdir ontoTools_1.33.1.tar.gz'
>>>>>>> 

* installing *source* package 'ontoTools' ...
** R
** data
** inst
** preparing package for lazy loading
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "connection" in package 'BiocGenerics' seems equivalent to one from package 'graph' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "file" in package 'BiocGenerics' seems equivalent to one from package 'graph' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "gzfile" in package 'BiocGenerics' seems equivalent to one from package 'graph' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "url" in package 'BiocGenerics' seems equivalent to one from package 'graph' and is not turning on duplicate class definitions for this class
Warning: replacing previous import 'coerce' when loading 'SparseM'
Creating a generic function for 'grep' from package 'base' in package 'ontoTools'
** help
*** installing help indices
** building package indices
** installing vignettes
   'ontoTools.Rnw' 
   'ontoToolsArchiving.Rnw' 
   'sgdiOnto.Rnw' 
** testing if installed package can be loaded
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "connection" in package 'BiocGenerics' seems equivalent to one from package 'graph' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "file" in package 'BiocGenerics' seems equivalent to one from package 'graph' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "gzfile" in package 'BiocGenerics' seems equivalent to one from package 'graph' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "url" in package 'BiocGenerics' seems equivalent to one from package 'graph' and is not turning on duplicate class definitions for this class
Warning: replacing previous import 'coerce' when loading 'SparseM'

* DONE (ontoTools)