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Package 208/554HostnameOS / ArchBUILDCHECKBUILD BIN
genefu 1.6.0
Benjamin Haibe-Kains , Markus Schroeder
Snapshot Date: 2012-03-31 17:01:49 -0700 (Sat, 31 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_10/madman/Rpacks/genefu
Last Changed Rev: 64678 / Revision: 64719
Last Changed Date: 2012-03-30 15:05:02 -0700 (Fri, 30 Mar 2012)
lamb2 Linux (openSUSE 11.4) / x86_64  OK  OK 
puck5 Linux (Ubuntu 12.04) / x86_64  OK [ OK ]
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
petty Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: genefu
Version: 1.6.0
Command: /home/hpages/test-puck5/bbs-2.10-bioc/R/bin/R CMD check --no-vignettes --timings genefu_1.6.0.tar.gz
StartedAt: 2012-04-01 01:06:46 -0700 (Sun, 01 Apr 2012)
EndedAt: 2012-04-01 01:07:49 -0700 (Sun, 01 Apr 2012)
EllapsedTime: 63.2 seconds
RetCode: 0
Status:  OK 
CheckDir: genefu.Rcheck
Warnings: 0

Command output

* using log directory '/loc/home/hpages/test-puck5/bbs-2.10-bioc/meat/genefu.Rcheck'
* using R version 2.15.0 RC (2012-03-22 r58802)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'genefu/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'genefu' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'genefu' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.8Mb
  sub-directories of 1Mb or more:
    data   4.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package(s) unavailable to check Rd xrefs: 'multilevel', 'dplR'
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  '/loc/home/hpages/test-puck5/bbs-2.10-bioc/meat/genefu.Rcheck/00check.log'
for details.

genefu.Rcheck/00install.out:

* installing *source* package 'genefu' ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'genefu.Rnw' 
** testing if installed package can be loaded

* DONE (genefu)

genefu.Rcheck/genefu-Ex.timings:

nameusersystemelapsed
bimod0.3920.0160.450
boxplotplus20.0040.0040.009
compare.proto.cor0.7400.0080.774
compute.pairw.cor.meta1.1040.0041.133
compute.proto.cor.meta0.4680.0000.500
cordiff.dep0.0200.0000.037
expos0.0000.0040.021
fuzzy.ttest0.0000.0000.001
gene700.2280.0000.273
gene760.0480.0040.081
geneid.map0.0720.0040.103
genius0.2960.0040.311
ggi0.0720.0000.100
intrinsic.cluster0.2960.0080.339
intrinsic.cluster.predict0.2000.0040.231
map.datasets0.3760.0000.404
mod10.0040.0000.019
mod20.0000.0040.016
nkis0.0000.0040.020
npi0.0080.0000.023
oncotypedx0.0840.0040.120
pam500.0360.0000.068
pik3cags0.0800.0000.119
ps.cluster0.6840.0120.735
read.m.file0.0320.0000.042
rename.duplicate0.0040.0000.002
rescale0.0560.0000.079
scmgene.robust0.0040.0040.021
scmod1.robust0.0120.0000.023
scmod2.robust0.0120.0000.025
sig.gene700.0080.0000.028
sig.gene760.0080.0000.025
sig.genius0.0120.0120.039
sig.ggi0.0120.0000.027
sig.oncotypedx0.0040.0040.023
sig.pik3cags0.0080.0000.018
sig.score0.0760.0080.116
sig.tamr130.0080.0000.022
ssp20030.0320.0040.071
ssp20060.0320.0040.070
st.gallen0.0120.0000.032
stab.fs0.2200.0000.219
stab.fs.ranking1.3840.0001.385
strescR0.0000.0000.001
subtype.cluster0.5280.0120.609
subtype.cluster.predict0.1600.0040.192
tamr130.0640.0000.090
tbrm000
vdxs0.0040.0000.015
weighted.meanvar0.0000.0000.001
write.m.file0.0040.0000.018