Package: IlluminaHumanMethylation450kmanifest

Version: 0.2.1

Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch IlluminaHumanMethylation450kmanifest_0.2.1.tar.gz

StartedAt: 2012-06-21 14:49:04 -0700 (Thu, 21 Jun 2012)

EndedAt: 2012-06-21 14:56:11 -0700 (Thu, 21 Jun 2012)

EllapsedTime: 426.8 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: IlluminaHumanMethylation450kmanifest.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.11-data-experiment/meat/IlluminaHumanMethylation450kmanifest.Rcheck'
* using R version 2.15.0 Patched (2012-04-26 r59216)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'IlluminaHumanMethylation450kmanifest/DESCRIPTION' ... OK
* this is package 'IlluminaHumanMethylation450kmanifest' version '0.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'IlluminaHumanMethylation450kmanifest' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 13.9Mb
  sub-directories of 1Mb or more:
    data  13.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... NOTE
  No methods found in "Biobase" for requests: eList, geneNames, getExpData, eList<-, geneNames<-, reporterNames, reporterNames<-
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                                           old_size new_size compress
  IlluminaHumanMethylation450kmanifest.rda   13.9Mb    8.6Mb       xz
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There were 2 notes.
See
  '/Users/biocbuild/bbs-2.11-data-experiment/meat/IlluminaHumanMethylation450kmanifest.Rcheck/00check.log'
for details.

* installing *source* package 'IlluminaHumanMethylation450kmanifest' ...
** data
**  moving datasets to lazyload DB
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
No methods found in "Biobase" for requests: eList, geneNames, getExpData, eList<-, geneNames<-, reporterNames, reporterNames<-

* DONE (IlluminaHumanMethylation450kmanifest)

name	user	system	elapsed
IlluminaHumanMethylation450kmanifest	0.031	0.006	0.037