Package: KEGGdzPathwaysGEO

Version: 1.1.1

Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.1.1.tar.gz

StartedAt: 2013-03-24 12:47:00 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 12:53:47 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 407.0 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGdzPathwaysGEO.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.1.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 300.7Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.

* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

* DONE (KEGGdzPathwaysGEO)

name	user	system	elapsed
GSE1297	0.116	0.012	0.139
GSE14762	0.168	0.012	0.240
GSE15471	0.356	0.024	0.664
GSE16515	0.268	0.028	1.077
GSE18842	0.432	0.040	1.376
GSE19188	0.576	0.092	0.804
GSE19728	0.188	0.004	0.206
GSE20153	0.104	0.008	0.140
GSE20291	0.076	0.000	0.090
GSE21354	0.092	0.024	0.156
GSE3467	0.108	0.012	0.132
GSE3585	0.036	0.008	0.061
GSE3678	0.088	0.016	0.130
GSE4107	0.124	0.016	0.181
GSE5281_EC	0.120	0.004	0.154
GSE5281_HIP	0.128	0.008	0.307
GSE5281_VCX	0.148	0.024	0.557
GSE6956AA	0.048	0.004	0.067
GSE6956C	0.052	0.004	0.096
GSE781	0.048	0.008	0.075
GSE8671	0.252	0.036	0.345
GSE8762	0.136	0.016	0.180
GSE9348	0.320	0.032	0.437
GSE9476	0.160	0.008	0.239
KEGGdzPathwaysGEO-package	0.332	0.016	0.350