BioC experimental data: CHECK report for LiebermanAidenHiC2009 on moscato1

Package: LiebermanAidenHiC2009

Version: 0.1.13

Command: rm -rf LiebermanAidenHiC2009.buildbin-libdir && mkdir LiebermanAidenHiC2009.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=LiebermanAidenHiC2009.buildbin-libdir LiebermanAidenHiC2009_0.1.13.tar.gz >LiebermanAidenHiC2009-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=LiebermanAidenHiC2009.buildbin-libdir --install="check:LiebermanAidenHiC2009-install.out" --force-multiarch --no-vignettes --timings LiebermanAidenHiC2009_0.1.13.tar.gz && mv LiebermanAidenHiC2009.buildbin-libdir/* LiebermanAidenHiC2009.Rcheck/ && rmdir LiebermanAidenHiC2009.buildbin-libdir

StartedAt: 2013-03-24 12:30:52 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 12:33:16 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 144.4 seconds

RetCode: 0

Status: WARNINGS

CheckDir: LiebermanAidenHiC2009.Rcheck

Warnings: 2

Command output

* using log directory 'D:/biocbld/bbs-2.11-data-experiment/meat/LiebermanAidenHiC2009.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LiebermanAidenHiC2009/DESCRIPTION' ... OK
* this is package 'LiebermanAidenHiC2009' version '0.1.13'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'LiebermanAidenHiC2009' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 10.4Mb
  sub-directories of 1Mb or more:
    data   9.2Mb
    doc    1.2Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for missing documentation entries ... WARNING
Undocumented data sets:
  'DNAse1.df' 'DNAse2.df' 'H3K27me3.df' 'H3K36me3.df' 'HiC_GM_chr14'
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  ChipSeqData.RData     203Kb    117Kb       xz
  HiC_GM_chr14.RData    9.0Mb    6.0Mb       xz
* checking installed files from 'inst/doc' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 2 warnings.
NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.11-data-experiment/meat/LiebermanAidenHiC2009.Rcheck/00check.log'
for details.


install for i386

* installing *source* package 'LiebermanAidenHiC2009' ...
** data
** inst
** help
No man pages found in package  'LiebermanAidenHiC2009' 
*** installing help indices
** building package indices
** installing vignettes
   'LiebermanAidenHiC2009.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'LiebermanAidenHiC2009' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'LiebermanAidenHiC2009' as LiebermanAidenHiC2009_0.1.13.zip

* DONE (LiebermanAidenHiC2009)

Summary

Command output