Package: XhybCasneuf

Version: 1.0.10

Command: rm -rf XhybCasneuf.buildbin-libdir && mkdir XhybCasneuf.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=XhybCasneuf.buildbin-libdir XhybCasneuf_1.0.10.tar.gz >XhybCasneuf-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=XhybCasneuf.buildbin-libdir --install="check:XhybCasneuf-install.out" --force-multiarch --no-vignettes --timings XhybCasneuf_1.0.10.tar.gz && mv XhybCasneuf.buildbin-libdir/* XhybCasneuf.Rcheck/ && rmdir XhybCasneuf.buildbin-libdir

StartedAt: 2013-03-24 12:53:42 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 12:58:10 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 268.4 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: XhybCasneuf.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.11-data-experiment/meat/XhybCasneuf.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'XhybCasneuf/DESCRIPTION' ... OK
* this is package 'XhybCasneuf' version '1.0.10'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'XhybCasneuf' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                         old_size new_size compress
  AffysTissue.noBl.rda      202Kb    154Kb       xz
  AffysTissue.rda           741Kb    491Kb       xz
  AffysTissueMC.rda         886Kb    590Kb       xz
  CustomsTissue.noBl.rda    153Kb    118Kb       xz
  CustomsTissue.rda         552Kb    371Kb       xz
  CustomsTissueMC.rda       688Kb    465Kb       xz
* checking installed files from 'inst/doc' ... NOTE
The following files should probably not be installed:
  'Makefile'

Consider the use of a .Rinstignore file: see 'Writing R Extensions',
or move the vignette sources from 'inst/doc' to 'vignettes'.
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.11-data-experiment/meat/XhybCasneuf.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'XhybCasneuf' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'Xhyb.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'XhybCasneuf' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'XhybCasneuf' as XhybCasneuf_1.0.10.zip

* DONE (XhybCasneuf)