Package: cheung2010

Version: 0.0.26

Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings cheung2010_0.0.26.tar.gz

StartedAt: 2013-03-24 11:51:34 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 11:58:16 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 401.6 seconds

RetCode: 0

Status:  OK

CheckDir: cheung2010.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/cheung2010.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cheung2010/DESCRIPTION’ ... OK
* this is package ‘cheung2010’ version ‘0.0.26’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘cheung2010’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 51.6Mb
  sub-directories of 1Mb or more:
    data      11.2Mb
    parts     30.9Mb
    rmaexprs   9.2Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: cheung2010-package.Rd:53-55: Dropping empty section \references
prepare_Rd: cheung2010-package.Rd:59-62: Dropping empty section \seealso
prepare_Rd: cheung2010-package.Rd:63-65: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
cheung2010locs 14.116  0.572  31.004
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 3 notes.
See
  ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/cheung2010.Rcheck/00check.log’
for details.

* installing *source* package ‘cheung2010’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘cheungTrans.Rnw’ 
** testing if installed package can be loaded

* DONE (cheung2010)

name	user	system	elapsed
cheung2010locs	14.116	0.572	31.004