Package: dsQTL

Version: 0.0.22

Command: rm -rf dsQTL.buildbin-libdir && mkdir dsQTL.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=dsQTL.buildbin-libdir dsQTL_0.0.22.tar.gz >dsQTL-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=dsQTL.buildbin-libdir --install="check:dsQTL-install.out" --force-multiarch --no-vignettes --timings dsQTL_0.0.22.tar.gz && mv dsQTL.buildbin-libdir/* dsQTL.Rcheck/ && rmdir dsQTL.buildbin-libdir

StartedAt: 2013-03-24 12:05:35 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 12:14:20 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 524.3 seconds

RetCode: 0

Status:  OK

CheckDir: dsQTL.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.11-data-experiment/meat/dsQTL.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'dsQTL/DESCRIPTION' ... OK
* this is package 'dsQTL' version '0.0.22'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'dsQTL' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 229.0Mb
  sub-directories of 1Mb or more:
    data   215.1Mb
    parts   13.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getSNPlocs: no visible binding for global variable 'ch2locs'
getSNPlocs: no visible binding for global variable 'ch17locs'
* checking Rd files ... NOTE
prepare_Rd: dsQTL-package.Rd:53-54: Dropping empty section \seealso
prepare_Rd: dsQTL-package.Rd:55-56: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' calls not declared from:
  'GGtools' 'rtracklayer'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 4 notes.
See
  'D:/biocbld/bbs-2.11-data-experiment/meat/dsQTL.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'dsQTL' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'dsq.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'dsQTL' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'dsQTL' as dsQTL_0.0.22.zip

* DONE (dsQTL)