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Package 78/133HostnameOS / ArchBUILDCHECKBUILD BIN
leeBamViews 0.99.21
VJ Carey
Snapshot Date: 2013-03-24 09:15:27 -0700 (Sun, 24 Mar 2013)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/leeBamViews
Last Changed Rev: 2194 / Revision: 2286
Last Changed Date: 2013-01-10 10:11:12 -0800 (Thu, 10 Jan 2013)
lamb1 Linux (openSUSE 12.1) / x86_64  ERROR  skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ ERROR ] skipped  skipped 
perceval Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 

Summary

Package: leeBamViews
Version: 0.99.21
Command: chmod a+r leeBamViews -R && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data leeBamViews
StartedAt: 2013-03-24 11:31:48 -0700 (Sun, 24 Mar 2013)
EndedAt: 2013-03-24 11:33:46 -0700 (Sun, 24 Mar 2013)
EllapsedTime: 117.8 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'leeBamViews/DESCRIPTION' ... OK
* preparing 'leeBamViews':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following object(s) are masked from 'package:stats':

    xtabs

The following object(s) are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, cbind,
    colnames, duplicated, eval, get, intersect, lapply, mapply, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int,
    rownames, sapply, setdiff, table, tapply, union, unique

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: Rsamtools
Loading required package: IRanges
Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: BSgenome
Loading required package: biomaRt
Loading required package: grid
Loading required package: AnnotationDbi

Attaching package: 'AnnotationDbi'

The following object(s) are masked from 'package:BSgenome':

    species

Loading required package: DBI


Error: processing vignette 'leeViews.Rnw' failed with diagnostics:
 chunk 10 (label = dolim) 
Error in c13pro[which(overlapsAny(c13pro, lim)), ] : 
  error in evaluating the argument 'i' in selecting a method for function '[': Error in which(overlapsAny(c13pro, lim)) : 
  error in evaluating the argument 'x' in selecting a method for function 'which': Error: could not find function "overlapsAny"

Execution halted