Package: miRNATarget

Version: 0.99.2

Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings miRNATarget_0.99.2.tar.gz

StartedAt: 2013-03-24 12:57:25 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 12:58:25 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 60.6 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/miRNATarget.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘0.99.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘miRNATarget’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 23.1Mb
  sub-directories of 1Mb or more:
    data  22.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/loc/home/biocbuild/bbs-2.11-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘miRNATarget.Rnw’ 
** testing if installed package can be loaded

* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.016	0.004	0.022
HS_refseq_to_affy_hc_g110	0.008	0.000	0.009
HS_refseq_to_affy_hg_focus	0.032	0.000	0.032
HS_refseq_to_affy_hg_u133_plus_2	0.116	0.004	0.122
HS_refseq_to_affy_hg_u133a	0.064	0.000	0.064
HS_refseq_to_affy_hg_u133a_2	0.072	0.000	0.073
HS_refseq_to_affy_hg_u133b	0.068	0.000	0.068
HS_refseq_to_affy_hg_u95a	0.036	0.004	0.041
HS_refseq_to_affy_hg_u95av2	0.036	0.000	0.038
HS_refseq_to_affy_hg_u95b	0.020	0.000	0.023
HS_refseq_to_affy_hg_u95c	0.016	0.000	0.018
HS_refseq_to_affy_hg_u95d	0.012	0.000	0.010
HS_refseq_to_affy_hg_u95e	0.016	0.000	0.017
HS_refseq_to_affy_huex_1_0_st_v2	2.368	0.032	2.402
HS_refseq_to_affy_hugene_1_0_st_v1	0.080	0.008	0.087
HS_refseq_to_affy_hugenefl	0.024	0.004	0.049
HS_refseq_to_affy_u133_x3p	0.360	0.000	0.362
HS_refseq_to_agilent_cgh_44b	0.020	0.000	0.022
HS_refseq_to_agilent_wholegenome	0.076	0.000	0.072
HS_refseq_to_canonical_transcript_stable_id	0.068	0.000	0.069
HS_refseq_to_ccds	0.048	0.004	0.051
HS_refseq_to_codelink	0.06	0.00	0.06
HS_refseq_to_embl	0.332	0.000	0.329
HS_refseq_to_ensembl_gene_id	0.072	0.000	0.071
HS_refseq_to_ensembl_peptide_id	0.080	0.008	0.089
HS_refseq_to_ensembl_transcript_id	0.092	0.000	0.096
HS_refseq_to_entrezgene	0.068	0.000	0.067
HS_refseq_to_hgnc_id	0.064	0.000	0.065
HS_refseq_to_hgnc_symbol	0.068	0.000	0.068
HS_refseq_to_hgnc_transcript_name	0.092	0.004	0.095
HS_refseq_to_illumina_humanht_12	0.088	0.000	0.089
HS_refseq_to_illumina_humanwg_6_v1	0.076	0.000	0.075
HS_refseq_to_illumina_humanwg_6_v2	0.072	0.000	0.073
HS_refseq_to_illumina_humanwg_6_v3	0.084	0.008	0.089
HS_refseq_to_interpro	0.268	0.000	0.270
HS_refseq_to_ipi	0.124	0.000	0.123
HS_refseq_to_merops	0.008	0.000	0.007
HS_refseq_to_pdb	0.044	0.004	0.045
HS_refseq_to_pfam	0.072	0.000	0.071
HS_refseq_to_phalanx_onearray	0.072	0.004	0.075
HS_refseq_to_protein_id	0.340	0.000	0.341
HS_refseq_to_refseq_dna	0.064	0.004	0.066
HS_refseq_to_refseq_genomic	0.004	0.000	0.002
HS_refseq_to_refseq_peptide	0.088	0.000	0.089
HS_refseq_to_rfam	0.004	0.000	0.004
HS_refseq_to_rfam_gene_name	0.004	0.000	0.002
HS_refseq_to_rfam_transcript_name	0.000	0.000	0.002
HS_refseq_to_smart	0.048	0.000	0.048
HS_refseq_to_tigrfam	0.004	0.000	0.006
HS_refseq_to_ucsc	0.084	0.000	0.087
HS_refseq_to_unigene	0.228	0.000	0.230
HS_refseq_to_uniprot_genename	0.108	0.000	0.107
HS_refseq_to_wikigene_name	0.076	0.000	0.076
MM_conv_id	0.008	0.000	0.006
MM_refseq_to_affy_mg_u74a	0.032	0.000	0.032
MM_refseq_to_affy_mg_u74av2	0.028	0.000	0.028
MM_refseq_to_affy_mg_u74b	0.020	0.004	0.024
MM_refseq_to_affy_mg_u74bv2	0.024	0.000	0.025
MM_refseq_to_affy_mg_u74c	0.004	0.004	0.009
MM_refseq_to_affy_mg_u74cv2	0.012	0.000	0.012
MM_refseq_to_affy_moe430a	0.048	0.008	0.057
MM_refseq_to_affy_moe430b	0.268	0.000	0.267
MM_refseq_to_affy_moex_1_0_st_v1	1.072	0.028	1.098
MM_refseq_to_affy_mogene_1_0_st_v1	0.068	0.000	0.068
MM_refseq_to_affy_mouse430_2	0.076	0.000	0.075
MM_refseq_to_affy_mouse430a_2	0.052	0.000	0.051
MM_refseq_to_affy_mu11ksuba	0.016	0.000	0.017
MM_refseq_to_affy_mu11ksubb	0.012	0.000	0.012
MM_refseq_to_agilent_wholegenome	0.06	0.00	0.06
MM_refseq_to_canonical_transcript_stable_id	0.060	0.000	0.061
MM_refseq_to_ccds	0.048	0.004	0.052
MM_refseq_to_codelink	0.048	0.000	0.050
MM_refseq_to_embl	0.276	0.000	0.277
MM_refseq_to_ensembl_gene_id	0.06	0.00	0.06
MM_refseq_to_ensembl_peptide_id	0.060	0.000	0.059
MM_refseq_to_ensembl_transcript_id	0.212	0.004	0.217
MM_refseq_to_entrezgene	0.056	0.004	0.060
MM_refseq_to_fantom	0.084	0.000	0.086
MM_refseq_to_illumina_mousewg_6_v1	0.076	0.004	0.079
MM_refseq_to_illumina_mousewg_6_v2	0.084	0.004	0.086
MM_refseq_to_interpro	0.116	0.008	0.123
MM_refseq_to_ipi	0.284	0.008	0.307
MM_refseq_to_merops	0.000	0.004	0.005
MM_refseq_to_mgi_id	0.052	0.004	0.056
MM_refseq_to_mgi_symbol	0.056	0.004	0.061
MM_refseq_to_mgi_transcript_name	0.060	0.000	0.061
MM_refseq_to_pdb	0.000	0.004	0.007
MM_refseq_to_pfam	0.060	0.000	0.063
MM_refseq_to_phalanx_onearray	0.052	0.000	0.054
MM_refseq_to_protein_id	0.196	0.012	0.208
MM_refseq_to_refseq_dna	0.048	0.000	0.048
MM_refseq_to_refseq_peptide	0.06	0.00	0.06
MM_refseq_to_rfam	0.004	0.000	0.003
MM_refseq_to_rfam_gene_name	0.004	0.000	0.003
MM_refseq_to_rfam_transcript_name	0.000	0.000	0.002
MM_refseq_to_smart	0.032	0.004	0.038
MM_refseq_to_tigrfam	0.008	0.000	0.005
MM_refseq_to_ucsc	0.048	0.004	0.051
MM_refseq_to_unigene	0.076	0.000	0.079
MM_refseq_to_uniprot_genename	0.072	0.004	0.074
MM_refseq_to_wikigene_name	0.060	0.000	0.058
TBL2	1.940	0.064	2.007
TBL2_HS	4.217	0.688	4.950
TBL2_MM	1.820	0.132	1.995
conv_id	0.000	0.004	0.010
id_conv	0.052	0.004	0.068