Package: pasilla

Version: 0.2.15

Command: rm -rf pasilla.buildbin-libdir && mkdir pasilla.buildbin-libdir && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=pasilla.buildbin-libdir pasilla_0.2.15.tar.gz >pasilla-install.out 2>&1 && D:\biocbld\bbs-2.11-bioc\R\bin\R.exe CMD check --library=pasilla.buildbin-libdir --install="check:pasilla-install.out" --force-multiarch --no-vignettes --timings pasilla_0.2.15.tar.gz && mv pasilla.buildbin-libdir/* pasilla.Rcheck/ && rmdir pasilla.buildbin-libdir

StartedAt: 2013-03-24 12:38:44 -0700 (Sun, 24 Mar 2013)

EndedAt: 2013-03-24 12:40:55 -0700 (Sun, 24 Mar 2013)

EllapsedTime: 131.7 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: pasilla.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.11-data-experiment/meat/pasilla.Rcheck'
* using R version 2.15.3 (2013-03-01)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pasilla/DESCRIPTION' ... OK
* this is package 'pasilla' version '0.2.15'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'pasilla' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 23.4Mb
  sub-directories of 1Mb or more:
    extdata  22.6Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                     old_size new_size compress
  pasillaExons.RData     59Kb     22Kb       xz
  pasillaGenes.RData    502Kb    105Kb       xz
* checking installed files from 'inst/doc' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.11-data-experiment/meat/pasilla.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'pasilla' ...
** data
** inst
** help
*** installing help indices
** building package indices
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following object(s) are masked from 'package:stats':

    xtabs

The following object(s) are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, cbind,
    colnames, duplicated, eval, get, intersect, lapply, mapply, mget,
    order, paste, pmax, pmax.int, pmin, pmin.int, rbind, rep.int,
    rownames, sapply, setdiff, table, tapply, union, unique

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

** installing vignettes
   'create_objects.Rnw' 
** testing if installed package can be loaded

install for x64

* installing *source* package 'pasilla' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'pasilla' as pasilla_0.2.15.zip

* DONE (pasilla)